Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 6.4e-155 550.8 302 100.0
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 6.4e-155 550.8 302 100.0
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 3.1e-72 276.2 658 33.3
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 1.3e-70 270.8 599 33.9
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 5.4e-69 265.4 659 31.9
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 1.9e-58 230.3 571 30.8
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 1.3e-54 217.6 165 69.1
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 1.2e-52 211.1 253 48.2
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 3.9e-51 206.1 598 28.4
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 3.3e-50 203.0 582 27.3
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 1.4e-48 197.6 661 26.2
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.1e-45 188.0 143 64.3
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 7.3e-42 175.3 597 26.1
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 2.4e-40 170.2 145 59.3
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 5.3e-40 169.1 596 26.5
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 5.3e-40 169.1 596 26.5
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 7.6e-39 165.2 589 25.1
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 6.4e-38 162.2 595 24.5
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 5.4e-37 159.1 143 55.9
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 9.3e-37 158.3 145 53.8
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.7e-36 156.8 579 24.5
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 2.3e-35 153.7 145 52.4
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 3.9e-35 152.9 580 24.5
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 6.6e-35 152.1 145 54.5
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.1e-34 151.4 585 24.3
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.9e-34 150.6 145 53.8
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 1.9e-34 150.6 570 23.9
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 7.4e-34 148.7 256 35.9
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 2.1e-33 147.1 192 43.8
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 2.8e-33 146.7 148 50.7
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 3.6e-33 146.4 565 23.5
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 4.8e-33 146.0 145 49.0
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 6.2e-33 145.6 143 51.0
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.8e-32 144.1 143 50.3
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 2.4e-32 143.7 145 49.0
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 4.0e-32 142.9 145 50.3
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 5.3e-32 142.5 148 47.3
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 6.9e-32 142.1 147 49.7
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 9.0e-32 141.7 588 22.4
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 1.5e-31 141.0 147 51.0
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 2.0e-31 140.6 112 64.3
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 2.6e-31 140.2 146 47.9
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 2.6e-31 140.2 148 48.6
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 2.6e-31 140.2 148 49.3
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 2.6e-31 140.2 221 39.8
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 4.5e-31 139.4 113 60.2
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 9.9e-31 138.3 158 44.9
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 1.3e-30 137.9 145 46.2
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 1.7e-30 137.5 143 52.4
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 2.2e-30 137.1 147 47.6
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 2.2e-30 137.1 113 58.4
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.9e-30 136.7 145 46.9
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 1.4e-29 134.4 147 47.6
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 3.2e-29 133.3 162 43.2
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 3.2e-29 133.3 171 45.6
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 3.2e-29 133.3 150 45.3
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 7.1e-29 132.1 165 44.8
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 7.1e-29 132.1 146 45.9
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 7.1e-29 132.1 254 35.4
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 7.1e-29 132.1 148 47.3
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 9.3e-29 131.7 145 44.8
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 9.3e-29 131.7 148 46.6
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 1.2e-28 131.3 151 45.0
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.2e-28 131.3 148 46.6
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 1.6e-28 131.0 148 45.9
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 2.7e-28 130.2 148 45.3
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 2.7e-28 130.2 254 33.1
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 4.6e-28 129.4 113 55.8
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 4.6e-28 129.4 148 43.9
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 4.6e-28 129.4 147 46.9
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 7.9e-28 128.6 207 38.6
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 7.9e-28 128.6 113 61.1
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 1.3e-27 127.9 148 45.3
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 1.8e-27 127.5 145 47.6
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 1.8e-27 127.5 151 43.0
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 1.8e-27 127.5 145 47.6
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 3.0e-27 126.7 141 49.6
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 6.7e-27 125.6 147 46.3
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 1.9e-26 124.0 145 44.1
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 4.3e-26 122.9 147 45.6
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 5.6e-26 122.5 147 46.3
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 5.6e-26 122.5 147 46.3
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 5.6e-26 122.5 151 42.4
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.6e-25 120.9 150 43.3
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 4.8e-25 119.4 143 47.6
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 1.1e-24 118.2 145 46.2
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 1.4e-24 117.9 107 55.1
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 1.4e-24 117.9 147 43.5
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 3.1e-24 116.7 215 34.9
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 4.5e-23 112.8 116 50.9
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.3e-22 111.3 113 51.3
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 4.9e-22 109.4 214 35.0
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 6.5e-22 109.0 215 34.0
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 1.4e-21 107.8 118 46.6
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 9.3e-21 105.1 83 65.1
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 1.2e-20 104.8 138 44.2
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 1.2e-20 104.8 146 42.5
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 3.5e-20 103.2 94 54.3
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 4.6e-20 102.8 149 38.9
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 7.9e-20 102.1 148 36.5
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 3.0e-19 100.1 186 33.3
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 6.7e-19 99.0 149 37.6
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 1.5e-18 97.8 175 33.7
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 1.3e-17 94.7 114 43.0
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 1.1e-16 91.7 151 39.7
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 1.2e-15 88.2 83 55.4
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 1.7e-14 84.3 58 69.0
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 2.5e-10 70.5 63 49.2
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 6.9e-08 62.4 147 29.3
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 2.2e-06 57.4 113 26.5
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 6.5e-06 55.8 72 47.2


User provided reference genes

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