Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 0.0e+00 2498.0 1295 100.0
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 0.0e+00 2000.3 1262 83.4
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 0.0e+00 1913.3 1222 82.2
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 0.0e+00 1811.2 1289 74.9
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 0.0e+00 1761.1 1329 71.3
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1756.1 1324 71.5
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1755.3 1328 71.0
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 0.0e+00 1719.1 1329 70.0
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 0.0e+00 1535.4 1310 64.9
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1511.1 1310 63.4
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1507.3 1328 62.7
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 1322.0 1320 57.2
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1254.2 1253 56.7
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1212.2 1305 54.4
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1205.3 1359 52.8
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 0.0e+00 1179.5 1224 56.2
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 0.0e+00 1174.1 1299 51.7
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 0.0e+00 1168.3 1297 51.3
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 0.0e+00 1139.8 1285 51.0
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 0.0e+00 1117.1 1268 52.8
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 0.0e+00 1102.8 1362 48.6
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 0.0e+00 1075.5 1352 48.2
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 8.9e-312 1074.3 924 62.3
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 2.3e-310 1069.3 1364 47.6
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 1.3e-300 1036.9 1363 47.1
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 1.4e-294 1016.9 1331 47.5
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 6.3e-292 1008.1 1324 48.6
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.1e-291 1005.4 661 80.6
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 5.9e-290 1001.5 1368 46.6
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 2.2e-289 999.6 1273 49.0
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 8.0e-287 991.1 1332 46.9
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 1.7e-284 983.4 1309 47.4
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 1.7e-284 983.4 1268 46.8
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 1.7e-281 973.4 1317 47.6
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 5.0e-281 971.8 1409 44.7
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 8.5e-281 971.1 1320 45.5
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 9.8e-277 957.6 1312 45.2
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 2.5e-272 943.0 1371 43.3
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.2e-272 942.2 1352 44.9
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.7e-271 938.7 1388 44.5
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 6.8e-270 934.9 1340 45.8
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.5e-269 933.7 1398 43.3
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 8.6e-265 917.9 1305 44.5
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 2.1e-263 913.3 1350 44.1
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 4.4e-261 905.6 1264 44.5
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 4.1e-259 899.0 1371 42.5
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 5.6e-256 888.6 1329 43.1
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 8.0e-255 884.8 1241 45.8
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 6.8e-254 881.7 1344 44.1
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 8.9e-254 881.3 1295 44.8
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 2.7e-250 869.8 1294 44.4
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 3.4e-245 852.8 1302 43.3
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 4.9e-244 849.0 1203 44.2
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 8.3e-244 848.2 1248 43.4
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 3.9e-241 839.3 1255 42.5
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 5.1e-241 839.0 1277 44.2
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 6.2e-239 832.0 1328 41.7
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 5.2e-238 828.9 1249 45.6
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.6e-231 807.4 1262 42.5
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.5e-221 774.2 1370 38.0
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 5.8e-221 772.3 1285 42.7
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 1.7e-212 744.2 930 47.5
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 4.3e-208 729.6 1398 39.1
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 2.8e-207 726.9 1077 42.5
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 6.7e-201 705.7 1334 38.3
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.1e-195 688.3 1218 39.3
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 2.5e-192 677.2 1247 37.4
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 1.1e-190 671.8 803 48.9
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 7.2e-187 659.1 1324 37.5
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 1.0e-185 655.2 1295 37.8
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 2.2e-183 647.5 1292 36.8
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 2.4e-182 644.0 1259 38.3
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 3.8e-180 636.7 1294 37.2
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.5e-179 634.0 1295 36.4
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 2.0e-176 624.4 1310 36.2
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 4.4e-176 623.2 1282 38.2
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 6.3e-175 619.4 1239 38.2
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 7.7e-173 612.5 1280 36.2
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.7e-172 611.3 1277 35.8
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 3.8e-172 610.1 1283 35.1
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 4.4e-168 596.7 1287 35.5
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 1.7e-167 594.7 1285 35.5
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 1.6e-165 588.2 1279 35.5
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 6.8e-161 572.8 1235 32.8
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.1e-158 563.9 673 51.4
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 8.0e-154 549.3 1211 32.1
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 7.0e-150 536.2 754 44.2
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 9.2e-142 509.2 1425 31.3
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 2.0e-141 508.1 1266 33.1
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 8.6e-140 502.7 711 46.7
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.6e-138 498.4 1279 32.8
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 2.2e-119 434.9 496 52.0
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 3.0e-116 424.5 966 36.1
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.9e-111 407.1 439 56.7
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 6.0e-109 400.2 549 44.1
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 2.4e-97 361.7 925 32.4
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 1.6e-93 349.0 1217 27.4
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 3.1e-81 308.1 1493 27.1
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 4.1e-81 307.8 188 78.7
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 4.5e-80 304.3 204 76.0
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 2.4e-73 282.0 170 79.4
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.3e-71 276.2 220 69.1
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 1.4e-70 272.7 294 50.3
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 3.6e-69 268.1 1657 26.0
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.3e-68 265.4 732 31.0
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 4.2e-62 244.6 348 39.9
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 3.0e-60 238.4 1383 23.5
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 4.0e-60 238.0 160 68.8
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 9.7e-59 233.4 254 53.1
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.4e-49 203.0 1356 25.3
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 2.0e-48 199.1 159 63.5
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 7.7e-48 197.2 325 41.5
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 4.9e-42 177.9 108 79.6
Psat0ss2518g0240 Pisum sativum HOM05D001879 ORTHO05D007648 2.9e-39 168.7 121 68.6
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 2.5e-38 165.6 105 71.4
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 4.3e-38 164.9 207 48.3
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 5.2e-36 157.9 136 67.6
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 2.3e-31 142.5 151 46.4
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 1.7e-23 116.3 221 38.5
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 2.8e-21 109.0 85 56.5
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 8.1e-21 107.5 85 56.5
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 5.2e-20 104.8 60 78.3
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 6.6e-15 87.8 54 70.4
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 1.2e-13 83.6 184 33.7
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 6.2e-13 81.3 84 50.0
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.1e-12 80.5 77 51.9
Psat7g011440 Pisum sativum HOM05D000252 ORTHO05D015734 2.3e-12 79.3 46 80.4
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.3e-12 79.3 77 50.6
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 5.2e-12 78.2 146 36.3
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 2.0e-11 76.3 40 90.0
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 7.6e-11 74.3 74 51.4
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 1.3e-10 73.6 118 38.1
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 1.4e-09 70.1 51 58.8
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 1.4e-09 70.1 113 39.8
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 4.1e-09 68.6 188 29.8
BcaB03g13969 Brassica carinata HOM05D001879 ORTHO05D007648 5.6e-06 58.2 175 32.6


User provided reference genes

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