Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 3.5e-25 117.5 58 100.0
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 1.7e-24 115.2 57 98.2
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 5.0e-24 113.6 58 96.6
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 5.0e-24 113.6 58 96.6
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 5.0e-24 113.6 58 96.6
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 1.5e-23 112.1 58 94.8
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.5e-23 112.1 58 94.8
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.5e-23 112.1 58 94.8
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 1.9e-23 111.7 56 96.4
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 1.9e-23 111.7 57 94.7
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 3.3e-23 110.9 58 93.1
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 3.3e-23 110.9 58 94.8
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 5.6e-23 110.2 58 93.1
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 5.2e-21 103.6 58 86.2
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 5.2e-21 103.6 58 86.2
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 5.2e-21 103.6 58 86.2
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 5.2e-21 103.6 58 86.2
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 5.8e-20 100.1 58 82.8
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 9.8e-20 99.4 58 81.0
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 9.8e-20 99.4 58 81.0
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 9.8e-20 99.4 58 81.0
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 9.8e-20 99.4 58 81.0
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 9.8e-20 99.4 58 81.0
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 2.2e-19 98.2 58 81.0
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 2.9e-19 97.8 58 79.3
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 3.7e-19 97.4 58 79.3
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 3.7e-19 97.4 53 88.7
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 4.9e-19 97.1 58 79.3
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 6.4e-19 96.7 58 79.3
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 8.3e-19 96.3 58 77.6
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 3.2e-18 94.4 58 75.9
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 3.2e-18 94.4 60 81.7
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 4.1e-18 94.0 59 79.7
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 9.2e-18 92.8 59 79.7
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 9.2e-18 92.8 59 79.7
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 9.2e-18 92.8 59 79.7
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 9.2e-18 92.8 59 81.4
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 9.2e-18 92.8 59 81.4
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.0e-17 91.7 59 79.7
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 2.0e-17 91.7 59 79.7
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 2.0e-17 91.7 59 79.7
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 2.0e-17 91.7 60 78.3
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 3.5e-17 90.9 59 78.0
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 3.5e-17 90.9 60 78.3
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 4.6e-17 90.5 59 78.0
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 4.6e-17 90.5 59 78.0
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 4.6e-17 90.5 59 78.0
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 4.6e-17 90.5 59 78.0
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 4.6e-17 90.5 59 78.0
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 4.6e-17 90.5 59 78.0
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 4.6e-17 90.5 59 78.0
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 4.6e-17 90.5 59 78.0
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 4.6e-17 90.5 59 78.0
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 7.8e-17 89.7 58 74.1
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 7.8e-17 89.7 59 78.0
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 1.0e-16 89.4 59 79.7
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.0e-16 89.4 59 76.3
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.0e-16 89.4 59 76.3
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 1.0e-16 89.4 59 76.3
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.0e-16 89.4 60 78.3
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.0e-16 89.4 60 78.3
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 1.3e-16 89.0 59 78.0
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 1.3e-16 89.0 60 76.7
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 2.3e-16 88.2 59 76.3
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 3.0e-16 87.8 59 78.0
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 3.0e-16 87.8 59 78.0
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 5.0e-16 87.0 59 74.6
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 5.0e-16 87.0 58 74.1
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.9e-15 85.1 60 75.0
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 5.6e-15 83.6 61 72.1
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 1.2e-14 82.4 50 84.0
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 1.6e-14 82.0 59 72.9
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 1.6e-14 82.0 61 70.5
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 1.6e-14 82.0 61 70.5
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 2.8e-14 81.3 61 70.5
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 3.6e-14 80.9 61 70.5
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 4.7e-14 80.5 57 73.7
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 6.2e-14 80.1 61 68.9
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 6.2e-14 80.1 61 68.9
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 6.2e-14 80.1 61 67.2
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 6.2e-14 80.1 61 67.2
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 6.2e-14 80.1 61 67.2
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 6.2e-14 80.1 61 67.2
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 2.3e-13 78.2 56 73.2
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.0e-13 77.4 46 76.1
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 5.2e-13 77.0 53 69.8
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 5.2e-13 77.0 53 67.9
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 8.9e-13 76.3 53 69.8
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 1.2e-12 75.9 54 72.2
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 2.0e-12 75.1 61 63.9
Medtr1g011670 Medicago truncatula HOM05D005020 ORTHO05D006017 2.6e-12 74.7 37 97.3
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 2.6e-12 74.7 61 63.9
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 2.6e-12 74.7 61 63.9
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 2.6e-12 74.7 61 63.9
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 2.6e-12 74.7 61 63.9
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 2.6e-12 74.7 61 63.9
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 3.4e-12 74.3 57 63.2
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 7.5e-12 73.2 49 65.3
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 1.3e-11 72.4 48 68.8
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 2.9e-11 71.2 58 62.1
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 2.4e-10 68.2 59 57.6
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 5.4e-10 67.0 51 64.7
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 5.4e-10 67.0 44 70.5
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 1.6e-09 65.5 54 59.3
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 1.6e-09 65.5 59 61.0
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 1.3e-08 62.4 54 55.6
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.7e-08 62.0 50 58.0
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 2.3e-08 61.6 55 54.5
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 3.0e-08 61.2 51 58.8
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 3.9e-08 60.8 44 63.6
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 3.9e-08 60.8 44 63.6
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 3.9e-08 60.8 55 58.2
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 6.6e-08 60.1 53 50.9
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 8.6e-08 59.7 44 61.4
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.9e-07 58.5 54 53.7
THA.LOC104802731 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 1.9e-07 58.5 57 59.6
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 2.5e-07 58.2 48 56.2
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 2.5e-07 58.2 44 61.4
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.5e-07 58.2 47 61.7
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 4.3e-07 57.4 54 55.6
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 5.6e-07 57.0 49 59.2
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 1.6e-06 55.5 54 53.7


User provided reference genes

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