Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g012280 Medicago truncatula HOM05D006351 ORTHO05D007796 7.3e-87 323.9 172 100.0
TPR.G32564 Trifolium pratense HOM05D006351 ORTHO05D007796 2.0e-36 156.4 129 69.0
Medtr4g014840 Medicago truncatula HOM05D006351 ORTHO05D007796 5.8e-36 154.8 129 66.7
Psat6g028600 Pisum sativum HOM05D006351 ORTHO05D007796 7.6e-36 154.5 157 59.9
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 4.2e-34 148.7 129 65.9
Glyma.17G215800 Glycine max HOM05D006351 ORTHO05D007796 6.7e-32 141.4 130 62.3
Phvul.001G047200 Phaseolus vulgaris HOM05D006351 ORTHO05D007796 1.2e-28 130.6 133 58.6
Lalb_Chr22g0361451 Lupinus albus HOM05D006351 ORTHO05D007796 1.5e-28 130.2 129 56.6
Lj5g0002049 Lotus japonicus HOM05D006351 ORTHO05D007796 7.6e-28 127.9 129 58.1
VMungo0647G0679 Vigna mungo HOM05D006351 ORTHO05D007796 1.7e-27 126.7 130 58.5
arahy.Tifrunner.gnm1.ann1.52204A Arachis hypogaea HOM05D006351 ORTHO05D007796 2.2e-27 126.3 132 56.8
arahy.Tifrunner.gnm1.ann1.5RBZ70 Arachis hypogaea HOM05D006351 ORTHO05D007796 1.4e-26 123.6 132 56.1
arahy.Tifrunner.gnm1.ann1.DQM65W Arachis hypogaea HOM05D006351 ORTHO05D007796 3.2e-26 122.5 132 54.5
arahy.Tifrunner.gnm1.ann1.7H8NL8 Arachis hypogaea HOM05D006351 ORTHO05D007796 4.2e-26 122.1 132 54.5
arahy.Tifrunner.gnm1.ann1.C8TN8W Arachis hypogaea HOM05D006351 ORTHO05D007796 6.7e-24 114.8 159 45.3
QL02p020121 Quercus lobata HOM05D006351 ORTHO05D007796 8.5e-19 97.8 164 39.6
CiPaw.08G008200 Carya illinoinensis HOM05D006351 ORTHO05D007796 4.2e-18 95.5 134 47.0
Lj8A733T33 Lonicera japonica HOM05D006351 ORTHO05D007796 1.2e-17 94.0 132 48.5
Dinv03414 Davidia involucrata HOM05D006351 ORTHO05D007796 1.6e-17 93.6 132 47.7
MELO3C016986.2 Cucumis melo HOM05D006351 ORTHO05D007796 2.7e-17 92.8 131 41.2
Cpa.g.sc187.30 Carica papaya HOM05D006351 ORTHO05D007796 3.6e-17 92.4 130 43.1
CsaV3_4G036840 Cucumis sativus L. HOM05D006351 ORTHO05D007796 3.6e-17 92.4 131 40.5
vmacro11222 Vaccinium macrocarpon HOM05D006351 ORTHO05D007796 6.1e-17 91.7 132 43.2
MD15G1131200 Malus domestica HOM05D006351 ORTHO05D007796 1.0e-16 90.9 131 47.3
Atru.chr7.2503_Atru.chr7.2504 Acer truncatum HOM05D006351 ORTHO05D007796 3.9e-16 89.0 131 42.7
Cfa013099 Carpinus fangiana HOM05D006351 ORTHO05D007796 6.7e-16 88.2 131 44.3
Ciclev10007789m.g Citrus clementina HOM05D006351 ORTHO05D007796 6.7e-16 88.2 158 39.2
Haze_21455 Corylus avellana HOM05D006351 ORTHO05D007796 6.7e-16 88.2 134 44.0
AT5G11030 Arabidopsis thaliana HOM05D006351 ORTHO05D007796 8.8e-16 87.8 129 42.6
arahy.Tifrunner.gnm1.ann1.XZMU6N Arachis hypogaea HOM05D006351 ORTHO05D007796 1.5e-15 87.0 159 39.0
AL6G21650 Arabidopsis lyrata HOM05D006351 ORTHO05D007796 2.6e-15 86.3 127 43.3
CARHR202260 Cardamine hirsuta HOM05D006351 ORTHO05D007796 2.6e-15 86.3 129 43.4
ClCG05G016570 Citrullus lanatus HOM05D006351 ORTHO05D007796 2.6e-15 86.3 141 38.3
TAR625G1335 Trochodendron aralioides HOM05D006351 ORTHO05D007796 4.4e-15 85.5 132 43.2
Thhalv10013026m.g Eutrema salsugineum HOM05D006351 ORTHO05D007796 9.7e-15 84.3 129 42.6
CANSAT54G0019 Cannabis sativa HOM05D006351 ORTHO05D007796 1.7e-14 83.6 130 41.5
TWI34G1294 Tripterygium wilfordii HOM05D006351 ORTHO05D007796 3.7e-14 82.4 131 44.3
GSVIVG01035918001 Vitis vinifera HOM05D006351 ORTHO05D007796 4.8e-14 82.0 129 44.2
Carub.0006s0954 Capsella rubella HOM05D006351 ORTHO05D007796 6.3e-14 81.6 128 41.4
Nitab4.5_0000389g0140 Nicotiana tabacum HOM05D006351 ORTHO05D007796 8.2e-14 81.3 134 41.8
Hund03479 Selenicereus undatus HOM05D006351 ORTHO05D007796 1.1e-13 80.9 134 37.3
Prupe.1G486500 Prunus persica HOM05D006351 ORTHO05D007796 1.4e-13 80.5 129 45.0
Potri.006G259600 Populus trichocarpa HOM05D006351 ORTHO05D007796 1.8e-13 80.1 128 43.8
Oeu028190.1 Olea europaea HOM05D006351 ORTHO05D007796 2.4e-13 79.7 131 41.2
Peaxi162Scf00116g00510 Petunia axillaris HOM05D006351 ORTHO05D007796 2.4e-13 79.7 124 42.7
FvH4_2g28280 Fragaria vesca HOM05D006351 ORTHO05D007796 3.1e-13 79.3 130 43.8
Sp6g32460 Schrenkiella parvula HOM05D006351 ORTHO05D007796 3.1e-13 79.3 126 40.5
Sed0014901 Sechium edule HOM05D006351 ORTHO05D007796 3.1e-13 79.3 129 39.5
Solyc01g094670.4 Solanum lycopersicum HOM05D006351 ORTHO05D007796 3.1e-13 79.3 123 41.5
Actinidia22310 Actinidia chinensis HOM05D006351 ORTHO05D007796 4.1e-13 79.0 148 40.5
Cc08_g00180 Coffea canephora HOM05D006351 ORTHO05D007796 4.1e-13 79.0 131 41.2
Nitab4.5_0002992g0070 Nicotiana tabacum HOM05D006351 ORTHO05D007796 1.5e-12 77.0 123 41.5
THA.LOC104815006 Tarenaya hassleriana HOM05D006351 ORTHO05D007796 1.5e-12 77.0 129 37.2
BcaC04g19265 Brassica carinata HOM05D006351 ORTHO05D007796 2.6e-12 76.3 127 40.2
Sopen01g038480 Solanum pennellii HOM05D006351 ORTHO05D007796 2.6e-12 76.3 123 41.5
CAN.G142.3 Capsicum annuum HOM05D006351 ORTHO05D007796 3.4e-12 75.9 124 42.7
Nn8g39723 Nelumbo nucifera HOM05D006351 ORTHO05D007796 3.4e-12 75.9 130 40.8
Sabra06G0202800 Salix brachista HOM05D006351 ORTHO05D007796 3.4e-12 75.9 128 42.2
DCAR_018801 Daucus carota HOM05D006351 ORTHO05D007796 7.7e-12 74.7 124 38.7
Sc06g0000450 Simmondsia chinensis HOM05D006351 ORTHO05D007796 7.7e-12 74.7 134 40.3
Duzib150G0289 Durio zibethinus HOM05D006351 ORTHO05D007796 1.0e-11 74.3 131 37.4
Manes.03G011600 Manihot esculenta HOM05D006351 ORTHO05D007796 1.0e-11 74.3 129 41.1
Hma1.2p1_0043F.1_g025890 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 1.3e-11 73.9 131 42.7
Hma1.2p1_0043F.1_g025900 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 1.3e-11 73.9 131 42.7
C09p65820 Brassica napus HOM05D006351 ORTHO05D007796 1.7e-11 73.6 127 38.6
BolC9t59403H Brassica oleracea HOM05D006351 ORTHO05D007796 1.7e-11 73.6 127 38.6
Thecc.09G019400 Theobroma cacao HOM05D006351 ORTHO05D007796 1.7e-11 73.6 131 36.6
Aa31LG3G16100 Aethionema arabicum HOM05D006351 ORTHO05D007796 2.2e-11 73.2 123 39.0
RcHm_v2.0_Chr6g0297191 Rosa chinensis HOM05D006351 ORTHO05D007796 2.9e-11 72.8 129 43.4
Gohir.A07G030500 Gossypium hirsutum HOM05D006351 ORTHO05D007796 3.8e-11 72.4 131 38.9
EL10Ac2g04151 Beta vulgaris HOM05D006351 ORTHO05D007796 5.0e-11 72.0 134 35.1
A10p26650 Brassica napus HOM05D006351 ORTHO05D007796 5.0e-11 72.0 127 38.6
BraA10t44723Z Brassica rapa HOM05D006351 ORTHO05D007796 5.0e-11 72.0 127 38.6
Gohir.D07G034400 Gossypium hirsutum HOM05D006351 ORTHO05D007796 8.5e-11 71.2 131 38.9
Gorai.001G036000 Gossypium raimondii HOM05D006351 ORTHO05D007796 8.5e-11 71.2 131 38.9
PGR119G2225 Punica granatum HOM05D006351 ORTHO05D007796 1.9e-10 70.1 119 42.0
AUR62031572 Chenopodium quinoa HOM05D006351 ORTHO05D007796 3.2e-10 69.3 131 35.1
Aqoxy7G03341 Aquilegia oxysepala HOM05D006351 ORTHO05D007796 4.2e-10 68.9 133 38.3
Eucgr.C01685 Eucalyptus grandis HOM05D006351 ORTHO05D007796 7.2e-10 68.2 131 38.2
Os08g0290100 Oryza sativa ssp. japonica HOM05D006351 ORTHO05D007796 9.4e-10 67.8 138 36.2
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 1.2e-09 67.4 132 37.9
MSTRG.9683 Avicennia marina HOM05D006351 ORTHO05D007796 1.6e-09 67.0 132 37.9
AUR62012449 Chenopodium quinoa HOM05D006351 ORTHO05D007796 4.7e-09 65.5 128 34.4
SGA_v2.0_scaffold12G06223 Striga asiatica HOM05D006351 ORTHO05D007796 4.7e-09 65.5 135 33.3
ECA246G3333 Erigeron canadensis HOM05D006351 ORTHO05D007796 8.0e-09 64.7 132 32.6
PSO782G3777 Papaver somniferum HOM05D006351 ORTHO05D007796 2.3e-08 63.2 129 35.7
HPP92_020077 Vanilla planifolia HOM05D006351 ORTHO05D007796 6.7e-08 61.6 123 38.2
Lsat_1_v5_gn_6_115401 Lactuca sativa HOM05D006351 ORTHO05D007796 1.1e-07 60.8 130 32.3
MBI14_g15653_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 1.5e-07 60.5 131 35.1
HanXRQChr16g0511151 Helianthus annuus HOM05D006351 ORTHO05D007796 7.4e-07 58.2 127 31.5
CANSAT25G0983 Cannabis sativa HOM05D006351 ORTHO05D007796 2.8e-06 56.2 81 40.7
CSS0041020 Camellia sinensis var. sinensis HOM05D006351 ORTHO05D007796 3.7e-06 55.8 73 43.8


User provided reference genes

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