Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 1.0e-240 836.3 412 100.0
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 2.9e-206 721.8 413 85.2
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 2.9e-206 721.8 413 85.2
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 2.4e-184 649.0 413 76.0
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 9.0e-184 647.1 416 76.4
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 5.8e-183 644.4 343 92.4
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 7.6e-183 644.0 417 76.0
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 1.4e-181 639.8 415 74.5
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 6.0e-180 634.4 413 74.3
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 3.3e-178 628.6 413 74.6
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 9.3e-173 610.5 411 72.0
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 4.6e-172 608.2 411 72.0
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 1.2e-159 567.0 416 68.3
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 5.5e-157 558.1 408 66.4
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 1.0e-155 553.9 418 66.0
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 2.0e-154 549.7 428 64.3
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 3.3e-154 548.9 409 65.8
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 3.3e-154 548.9 409 64.8
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 4.3e-154 548.5 409 64.8
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 4.8e-153 545.0 385 67.3
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 8.2e-153 544.3 409 65.5
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 1.5e-151 540.0 418 63.4
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 3.4e-151 538.9 408 64.0
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 8.5e-150 534.3 410 65.6
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 1.4e-149 533.5 407 64.6
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.4e-149 533.5 432 62.0
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 1.9e-149 533.1 414 63.5
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 4.2e-149 531.9 409 64.5
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 9.4e-149 530.8 415 65.1
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 2.1e-148 529.6 407 64.6
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 2.1e-148 529.6 407 63.6
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 2.1e-148 529.6 415 64.1
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.7e-148 528.5 409 63.8
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 7.9e-148 527.7 432 61.8
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 7.9e-148 527.7 407 63.4
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 7.9e-148 527.7 411 63.7
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.4e-147 526.9 413 62.7
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 3.0e-147 525.8 393 66.7
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 3.9e-147 525.4 409 64.1
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 6.7e-147 524.6 404 64.1
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 2.6e-146 522.7 390 65.4
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 5.7e-146 521.5 415 61.9
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 7.4e-146 521.2 409 63.8
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 1.7e-145 520.0 407 62.7
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.7e-145 520.0 409 63.6
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 1.7e-145 520.0 407 61.9
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 2.2e-145 519.6 413 63.4
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 2.2e-145 519.6 413 62.0
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 3.7e-145 518.8 407 63.4
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 4.8e-145 518.5 407 61.7
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 8.2e-145 517.7 407 61.7
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.1e-144 517.3 408 63.2
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 1.1e-144 517.3 412 63.1
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 1.8e-144 516.5 390 62.8
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 9.1e-144 514.2 364 68.7
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 1.5e-143 513.5 406 62.8
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 1.5e-143 513.5 406 62.8
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 2.0e-143 513.1 390 63.8
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 2.6e-143 512.7 412 60.9
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 2.6e-143 512.7 404 62.6
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 3.5e-143 512.3 406 62.8
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 3.5e-143 512.3 392 63.3
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 5.9e-143 511.5 406 61.8
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 5.9e-143 511.5 404 61.9
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 1.0e-142 510.8 406 62.1
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 1.7e-142 510.0 406 62.3
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 5.0e-142 508.4 407 62.2
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 8.5e-142 507.7 407 60.9
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 8.5e-142 507.7 407 60.9
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 1.5e-141 506.9 410 61.5
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 1.9e-141 506.5 406 61.8
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 2.5e-141 506.1 446 57.2
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 2.5e-141 506.1 412 61.4
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 2.5e-141 506.1 406 61.6
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 5.5e-141 505.0 347 68.9
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 7.2e-141 504.6 405 62.2
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 1.6e-140 503.4 407 60.9
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 2.7e-140 502.7 407 60.4
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 6.1e-140 501.5 404 60.6
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 8.0e-140 501.1 406 60.1
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 2.3e-139 499.6 407 60.2
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 4.0e-139 498.8 408 61.3
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 5.7e-138 495.0 447 56.6
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 5.7e-138 495.0 348 68.4
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 9.7e-138 494.2 406 59.6
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 2.2e-137 493.0 405 60.2
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 6.3e-137 491.5 435 56.8
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 8.2e-137 491.1 478 55.4
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 1.1e-136 490.7 404 59.2
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 1.1e-136 490.7 406 60.3
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 2.4e-136 489.6 406 59.4
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 4.1e-136 488.8 405 59.8
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 7.0e-136 488.0 407 60.2
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 1.2e-135 487.3 361 65.9
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 2.6e-135 486.1 405 59.3
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 3.5e-135 485.7 411 59.1
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 1.3e-134 483.8 415 58.8
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.7e-134 483.4 408 58.6
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 2.9e-134 482.6 348 65.5
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 1.1e-133 480.7 357 65.8
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 1.9e-133 479.9 405 58.0
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 4.2e-133 478.8 339 67.6
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 9.4e-133 477.6 393 59.5
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 9.4e-133 477.6 378 60.6
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 2.7e-132 476.1 379 61.2
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.0e-131 474.2 355 64.8
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.4e-131 473.8 403 57.6
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 3.7e-129 465.7 425 56.7
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 1.4e-128 463.8 343 64.7
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 1.4e-128 463.8 405 57.3
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.8e-128 463.4 343 65.0
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 3.1e-128 462.6 343 65.0
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 5.4e-128 461.8 408 57.4
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 7.0e-128 461.5 322 67.4
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 1.2e-127 460.7 417 56.1
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 3.8e-126 455.7 411 55.5
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 5.0e-126 455.3 413 55.9
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 8.5e-126 454.5 379 56.7
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 4.2e-125 452.2 417 56.1
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 9.4e-125 451.1 409 58.9
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.1e-124 449.9 340 63.5
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 3.4e-122 442.6 381 56.7
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 1.6e-116 423.7 293 68.9
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 3.4e-114 416.0 449 50.6
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 1.4e-107 394.0 289 66.4
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 1.4e-107 394.0 340 56.2
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 4.3e-101 372.5 384 48.2
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 1.0e-94 351.3 301 54.2
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 2.0e-90 337.0 303 51.5
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 9.6e-85 318.2 345 46.7
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 1.8e-83 313.9 323 49.5
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 5.2e-83 312.4 313 54.0
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 1.2e-79 301.2 195 71.8
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 1.3e-76 291.2 220 64.5
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 1.3e-76 291.2 270 51.9
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 1.6e-68 264.2 287 49.5
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 3.8e-65 253.1 250 53.2
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.4e-64 250.4 351 41.3
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.7e-44 183.3 181 51.4
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 1.8e-43 181.0 140 60.0
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 2.4e-43 180.6 189 53.4
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 1.4e-40 171.4 318 34.9
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 3.4e-34 150.2 316 31.6
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 7.9e-31 139.0 117 60.7
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 1.4e-30 138.3 309 30.7
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 6.3e-28 129.4 116 55.2
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 3.5e-26 123.6 61 95.1
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 6.5e-25 119.4 121 52.1
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.6e-23 114.8 84 64.3
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 8.0e-23 112.5 77 66.2
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 8.8e-22 109.0 58 81.0
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 2.9e-17 94.0 60 71.7
Medtr5g070470 Medicago truncatula HOM05D000009 ORTHO05D000008 1.6e-15 88.2 137 41.6
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 2.1e-15 87.8 67 58.2
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.0e-14 85.5 140 35.7
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 8.8e-14 82.4 105 44.8
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 3.4e-13 80.5 68 54.4
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 1.8e-11 74.7 49 67.3
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 7.0e-11 72.8 68 51.5
Medtr5g071570 Medicago truncatula HOM05D000009 ORTHO05D000008 2.7e-10 70.9 107 44.9
Cpa.g.sc6.184 Carica papaya HOM05D000363 ORTHO05D000236 3.2e-08 63.9 136 31.6
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 1.6e-07 61.6 121 35.5
Medtr5g072260 Medicago truncatula HOM05D036032 ORTHO05D260814 3.6e-07 60.5 85 44.7
AagrBONN_evm.TU.Sc2ySwM_362.2316 Anthoceros agrestis HOM05D000363 ORTHO05D000236 8.0e-07 59.3 148 31.1
MD15G1252000 Malus domestica HOM05D000363 ORTHO05D000236 8.0e-07 59.3 86 36.0
CDE08G0389 Ceratophyllum demersum HOM05D000363 ORTHO05D000236 2.3e-06 57.8 280 23.9
FvH4_1g12460 Fragaria vesca HOM05D000363 ORTHO05D000236 2.3e-06 57.8 77 40.3
FAN19G0327 Fragaria x ananassa HOM05D000363 ORTHO05D000236 2.3e-06 57.8 77 40.3
MD02G1138500 Malus domestica HOM05D000363 ORTHO05D000236 2.3e-06 57.8 86 36.0
Prupe.7G162300 Prunus persica HOM05D000363 ORTHO05D000236 2.3e-06 57.8 76 36.8
AagrBONN_evm.TU.Sc2ySwM_362.2317 Anthoceros agrestis HOM05D000363 ORTHO05D000236 3.0e-06 57.4 146 31.5
Medtr5g072330 Medicago truncatula HOM05D036032 ORTHO05D005773 3.0e-06 57.4 43 65.1
SMO201G0237 Selaginella moellendorffii HOM05D000363 ORTHO05D000236 3.0e-06 57.4 117 31.6
Prupe.7G162400 Prunus persica HOM05D000363 ORTHO05D000236 4.0e-06 57.0 86 34.9
QL11p045365 Quercus lobata HOM05D000363 ORTHO05D000236 8.8e-06 55.8 85 38.8


User provided reference genes

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