Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0271s0010 Medicago truncatula HOM05D003498 ORTHO05D004191 1.3e-73 279.6 142 100.0
Medtr0274s0020 Medicago truncatula HOM05D003498 ORTHO05D004191 1.9e-69 265.8 136 97.8
Medtr1g092440 Medicago truncatula HOM05D000397 ORTHO05D004191 5.6e-69 264.2 136 97.1
Glyma.13G277200 Glycine max HOM05D003498 ORTHO05D004191 1.9e-56 222.6 136 82.4
TPR.G38988 Trifolium pratense HOM05D003498 ORTHO05D004191 3.6e-55 218.4 136 83.1
Lalb_Chr01g0016861 Lupinus albus HOM05D003498 ORTHO05D004191 5.1e-54 214.5 135 82.2
arahy.Tifrunner.gnm1.ann1.C6G3CE Arachis hypogaea HOM05D003498 ORTHO05D004191 1.3e-52 209.9 136 75.0
Lalb_Chr10g0095001 Lupinus albus HOM05D003498 ORTHO05D004191 1.3e-52 209.9 136 79.4
VMungo1080G1345 Vigna mungo HOM05D003498 ORTHO05D004191 1.1e-51 206.8 136 77.2
arahy.Tifrunner.gnm1.ann1.82NANE Arachis hypogaea HOM05D003498 ORTHO05D004191 2.4e-51 205.7 136 73.5
Lj5g0005525 Lotus japonicus HOM05D003498 ORTHO05D004191 5.5e-48 194.5 137 74.5
arahy.Tifrunner.gnm1.ann1.IHQ30F Arachis hypogaea HOM05D003498 ORTHO05D004191 2.1e-47 192.6 130 73.8
arahy.Tifrunner.gnm1.ann1.MGT28Z Arachis hypogaea HOM05D003498 ORTHO05D004191 2.1e-47 192.6 130 73.8
Lj1g0028146 Lotus japonicus HOM05D003498 ORTHO05D004191 3.3e-45 185.3 125 75.2
Ca_01840_v3 Cicer arietinum L. HOM05D003498 ORTHO05D004191 1.7e-41 172.9 93 89.2
Psat5g244520 Pisum sativum HOM05D003498 ORTHO05D004191 2.2e-41 172.6 96 88.5
Gohir.A11G167100 Gossypium hirsutum HOM05D003498 ORTHO05D004191 1.1e-40 170.2 125 68.8
Gorai.007G185700 Gossypium raimondii HOM05D003498 ORTHO05D004191 1.4e-40 169.9 125 68.8
Gohir.D11G173400 Gossypium hirsutum HOM05D003498 ORTHO05D004191 5.5e-40 167.9 125 68.0
Duzib133G0132 Durio zibethinus HOM05D003498 ORTHO05D004191 7.2e-40 167.5 126 68.3
Duzib138G0533 Durio zibethinus HOM05D003498 ORTHO05D004191 1.6e-39 166.4 123 67.5
Phvul.005G072200 Phaseolus vulgaris HOM05D003498 ORTHO05D004191 3.6e-39 165.2 92 85.9
Thecc.04G123800 Theobroma cacao HOM05D003498 ORTHO05D004191 3.9e-38 161.8 137 62.8
Cfa012954 Carpinus fangiana HOM05D002694 ORTHO05D002927 5.2e-38 161.4 136 62.5
QL02p026417 Quercus lobata HOM05D003498 ORTHO05D004191 7.4e-37 157.5 128 64.1
Gohir.A07G076000 Gossypium hirsutum HOM05D003498 ORTHO05D004191 1.3e-36 156.8 119 68.1
Carub.0008s2011 Capsella rubella HOM05D003498 ORTHO05D004191 2.2e-36 156.0 128 63.3
Potri.001G334900 Populus trichocarpa HOM05D003498 ORTHO05D004191 2.2e-36 156.0 126 63.5
Gorai.001G085600 Gossypium raimondii HOM05D003498 ORTHO05D004191 2.8e-36 155.6 119 68.1
MD17G1016300 Malus domestica HOM05D003498 ORTHO05D004191 4.8e-36 154.8 125 62.4
Aa31LG1G11800 Aethionema arabicum HOM05D003498 ORTHO05D004191 6.3e-36 154.5 125 64.0
Haze_21315 Corylus avellana HOM05D003498 ORTHO05D004191 8.2e-36 154.1 125 64.8
Eucgr.A01374 Eucalyptus grandis HOM05D003498 ORTHO05D004191 1.1e-35 153.7 128 63.3
FAN05G5642 Fragaria x ananassa HOM05D003498 ORTHO05D004191 1.1e-35 153.7 133 58.6
AL8G35910 Arabidopsis lyrata HOM05D003498 ORTHO05D004191 1.4e-35 153.3 128 62.5
Ciclev10016330m.g Citrus clementina HOM05D003498 ORTHO05D004191 1.4e-35 153.3 136 61.0
Cpa.g.sc802.1 Carica papaya HOM05D003498 ORTHO05D004191 1.8e-35 152.9 128 64.8
FvH4_6g52930 Fragaria vesca HOM05D003498 ORTHO05D004191 1.8e-35 152.9 136 57.4
FAN14G2218 Fragaria x ananassa HOM05D003498 ORTHO05D004191 1.8e-35 152.9 136 57.4
CARHR285810 Cardamine hirsuta HOM05D003498 ORTHO05D004191 4.1e-35 151.8 134 61.2
TAR622G0600 Trochodendron aralioides HOM05D003498 ORTHO05D004191 4.1e-35 151.8 136 60.3
FAN09G1233 Fragaria x ananassa HOM05D003498 ORTHO05D004191 9.1e-35 150.6 136 56.6
FAN02G3013 Fragaria x ananassa HOM05D003498 ORTHO05D004191 1.2e-34 150.2 136 56.6
CiPaw.08G003000 Carya illinoinensis HOM05D003498 ORTHO05D004191 1.6e-34 149.8 136 59.6
Atru.chr10.1225 Acer truncatum HOM05D003498 ORTHO05D004191 2.0e-34 149.4 121 67.8
Actinidia18419 Actinidia chinensis HOM05D003498 ORTHO05D004191 2.6e-34 149.1 135 60.7
CANSAT56G0570 Cannabis sativa HOM05D003498 ORTHO05D004191 2.6e-34 149.1 136 58.1
Sabra16G0216000 Salix brachista HOM05D003498 ORTHO05D004191 3.5e-34 148.7 137 59.9
Rhsim10G0009900 Rhododendron simsii HOM05D003498 ORTHO05D004191 5.9e-34 147.9 125 61.6
Manes.14G169300 Manihot esculenta HOM05D003498 ORTHO05D004191 1.0e-33 147.1 125 60.0
ClCG07G012360 Citrullus lanatus HOM05D003498 ORTHO05D004191 1.3e-33 146.7 126 61.9
Manes.14G170700 Manihot esculenta HOM05D003498 ORTHO05D004191 2.2e-33 146.0 125 61.6
QL02p008646 Quercus lobata HOM05D003498 ORTHO05D004191 2.9e-33 145.6 133 59.4
TWI36G0082 Tripterygium wilfordii HOM05D003498 ORTHO05D004191 2.9e-33 145.6 126 64.3
Nn3g16542 Nelumbo nucifera HOM05D003498 ORTHO05D004191 3.8e-33 145.2 136 57.4
Migut.K01441 Erythranthe guttata HOM05D003498 ORTHO05D004191 5.0e-33 144.8 131 58.0
Prupe.3G301400 Prunus persica HOM05D003498 ORTHO05D004191 6.5e-33 144.4 96 71.9
Gohir.D07G080500 Gossypium hirsutum HOM05D003498 ORTHO05D004191 8.5e-33 144.1 90 76.7
THA.LOC104810770 Tarenaya hassleriana HOM05D003498 ORTHO05D004191 8.5e-33 144.1 126 61.1
Dinv33373 Davidia involucrata HOM05D003498 ORTHO05D004191 1.5e-32 143.3 121 65.3
Sed0009078 Sechium edule HOM05D003498 ORTHO05D004191 1.5e-32 143.3 129 60.5
TAR374G1609 Trochodendron aralioides HOM05D003498 ORTHO05D004191 1.5e-32 143.3 136 59.6
Sp6g21120 Schrenkiella parvula HOM05D003498 ORTHO05D004191 1.9e-32 142.9 128 60.9
MD09G1015900 Malus domestica HOM05D003498 ORTHO05D004191 2.5e-32 142.5 96 69.8
GSVIVG01001834001 Vitis vinifera HOM05D003498 ORTHO05D004191 2.5e-32 142.5 126 61.1
MELO3C017855.2 Cucumis melo HOM05D003498 ORTHO05D004191 3.2e-32 142.1 129 58.9
Prupe.3G071800 Prunus persica HOM05D003498 ORTHO05D004191 3.2e-32 142.1 96 70.8
CSS0027983 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 5.5e-32 141.4 136 57.4
CsaV3_4G001780 Cucumis sativus L. HOM05D003498 ORTHO05D004191 5.5e-32 141.4 129 58.9
QL02p008668 Quercus lobata HOM05D003498 ORTHO05D004191 5.5e-32 141.4 87 77.0
Aqoxy3G02772 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 7.2e-32 141.0 136 57.4
AUR62017642 Chenopodium quinoa HOM05D003498 ORTHO05D004191 7.2e-32 141.0 129 58.1
HanXRQChr14g0450941 Helianthus annuus HOM05D003498 ORTHO05D004191 7.2e-32 141.0 129 59.7
Hma1.2p1_0279F.1_g112380 Hydrangea macrophylla HOM05D003498 ORTHO05D004191 9.4e-32 140.6 136 58.1
PGR083G2492 Punica granatum HOM05D003498 ORTHO05D004191 2.1e-31 139.4 87 77.0
CSS0006967 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 2.7e-31 139.0 136 56.6
Atru.chr6.2501 Acer truncatum HOM05D003498 ORTHO05D004191 8.0e-31 137.5 81 84.0
CiPaw.07G235500 Carya illinoinensis HOM05D003498 ORTHO05D004191 8.0e-31 137.5 84 77.4
Lsat_1_v5_gn_2_93800 Lactuca sativa HOM05D003498 ORTHO05D004191 8.0e-31 137.5 129 57.4
Lj7A607T30 Lonicera japonica HOM05D003498 ORTHO05D004191 8.0e-31 137.5 120 63.3
BraA10t43747Z Brassica rapa HOM05D003498 ORTHO05D004191 1.0e-30 137.1 124 62.9
AUR62007665 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.4e-30 136.7 115 61.7
vmacro05933 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 1.4e-30 136.7 85 77.6
Actinidia05930 Actinidia chinensis HOM05D003498 ORTHO05D004191 1.8e-30 136.3 84 78.6
BcaC04g19772 Brassica carinata HOM05D003498 ORTHO05D004191 1.8e-30 136.3 124 63.7
C09p51820 Brassica napus HOM05D000758 ORTHO05D001216 1.8e-30 136.3 124 63.7
BolC9t58046H Brassica oleracea HOM05D000758 ORTHO05D004191 1.8e-30 136.3 124 63.7
Haze_25285 Corylus avellana HOM05D003498 ORTHO05D004191 1.8e-30 136.3 137 56.9
ECA238G3044 Erigeron canadensis HOM05D003498 ORTHO05D004191 1.8e-30 136.3 129 59.7
A10p16650 Brassica napus HOM05D000758 ORTHO05D004191 2.3e-30 136.0 124 62.9
PSO210G3977 Papaver somniferum HOM05D003498 ORTHO05D004191 2.3e-30 136.0 139 55.4
AT5G59440 Arabidopsis thaliana HOM05D003498 ORTHO05D004191 4.0e-30 135.2 97 68.0
PSO170G3520 Papaver somniferum HOM05D003498 ORTHO05D004191 4.0e-30 135.2 139 54.0
AUR62020308 Chenopodium quinoa HOM05D003498 ORTHO05D004191 5.2e-30 134.8 115 60.9
vmacro18322 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 5.2e-30 134.8 130 60.0
AUR62036945 Chenopodium quinoa HOM05D003498 ORTHO05D004191 6.7e-30 134.4 115 60.0
Thhalv10014606m.g Eutrema salsugineum HOM05D003498 ORTHO05D004191 6.7e-30 134.4 91 72.5
Os07g0639900 Oryza sativa ssp. japonica HOM05D003498 ORTHO05D004191 6.7e-30 134.4 100 67.0
PSO541G3815 Papaver somniferum HOM05D003498 ORTHO05D004191 6.7e-30 134.4 139 54.0
PGR083G1382 Punica granatum HOM05D003498 ORTHO05D004191 8.8e-30 134.0 97 72.2
Hund09045 Selenicereus undatus HOM05D003498 ORTHO05D004191 8.8e-30 134.0 104 64.4
AUR62022230 Chenopodium quinoa HOM05D003498 ORTHO05D000001 1.2e-29 133.7 111 63.1
BcaB08g36258 Brassica carinata HOM05D003498 ORTHO05D004191 1.5e-29 133.3 126 60.3
MBI11_g00914_MAGBIO Magnolia biondii HOM05D003498 ORTHO05D004191 2.0e-29 132.9 138 52.9
PSO675G6488 Papaver somniferum HOM05D003498 ORTHO05D004191 2.0e-29 132.9 113 62.8
HPP92_003500 Vanilla planifolia HOM05D003498 ORTHO05D004191 2.0e-29 132.9 114 57.0
Zm00001eb109870 Zea mays HOM05D003498 ORTHO05D004191 2.0e-29 132.9 85 72.9
Aqoxy7G03334 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 2.6e-29 132.5 117 59.8
CSS0002226 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 3.3e-29 132.1 111 61.3
AUR62042316 Chenopodium quinoa HOM05D003498 ORTHO05D004191 3.3e-29 132.1 81 75.3
RcHm_v2.0_Chr2g0174641 Rosa chinensis HOM05D003498 ORTHO05D004191 3.3e-29 132.1 90 70.0
AUR62042988 Chenopodium quinoa HOM05D003498 ORTHO05D004191 5.7e-29 131.3 81 76.5
MSTRG.15556 Avicennia marina HOM05D003498 ORTHO05D004191 7.5e-29 131.0 105 64.8
AUR62012870 Chenopodium quinoa HOM05D003498 ORTHO05D004191 7.5e-29 131.0 81 76.5
AUR62025775 Chenopodium quinoa HOM05D003498 ORTHO05D018212 7.5e-29 131.0 115 58.3
HanXRQChr05g0138221 Helianthus annuus HOM05D003498 ORTHO05D004191 9.7e-29 130.6 126 57.1
HanXRQChr05g0142761 Helianthus annuus HOM05D003498 ORTHO05D004191 9.7e-29 130.6 126 57.1
Lsat_1_v5_gn_2_32401 Lactuca sativa HOM05D003498 ORTHO05D004191 9.7e-29 130.6 127 55.9
ATR1120G052 Amborella trichopoda HOM05D003498 ORTHO05D004191 1.3e-28 130.2 118 60.2
AUR62003275 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.3e-28 130.2 81 76.5
Rhsim08G0045600 Rhododendron simsii HOM05D003498 ORTHO05D004191 1.3e-28 130.2 125 56.8
SGA_v2.0_scaffold68G22828 Striga asiatica HOM05D003498 ORTHO05D004191 1.3e-28 130.2 131 56.5
CSS0032491 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 1.7e-28 129.8 88 73.9
Ah.01g001720 Amaranthus hybridus HOM05D003498 ORTHO05D004191 2.2e-28 129.4 95 66.3
Oeu001847.2 Olea europaea HOM05D003498 ORTHO05D004191 2.2e-28 129.4 81 76.5
HPP92_026896 Vanilla planifolia HOM05D003498 ORTHO05D004191 2.2e-28 129.4 86 68.6
Oeu001405.1 Olea europaea HOM05D003498 ORTHO05D004191 2.8e-28 129.0 81 76.5
SGA_v2.0_scaffold47G17560 Striga asiatica HOM05D003498 ORTHO05D004191 2.8e-28 129.0 131 55.7
CSS0030890 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 3.7e-28 128.6 111 60.4
EL10Ac9g22898 Beta vulgaris HOM05D003498 ORTHO05D004191 1.1e-27 127.1 136 53.7
Nitab4.5_0002877g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 2.4e-27 125.9 117 60.7
Sc07g0003610 Simmondsia chinensis HOM05D003498 ORTHO05D004191 5.3e-27 124.8 80 72.5
unitig_748.g7053 Utricularia gibba HOM05D003498 ORTHO05D004191 7.0e-27 124.4 79 74.7
CDE09G0325 Ceratophyllum demersum HOM05D003498 ORTHO05D004191 9.1e-27 124.0 85 70.6
Cc06_g23000 Coffea canephora HOM05D003498 ORTHO05D004191 9.1e-27 124.0 110 61.8
Nitab4.5_0011275g0010 Nicotiana tabacum HOM05D003498 ORTHO05D004191 9.1e-27 124.0 117 59.8
Nitab4.5_0000441g0220 Nicotiana tabacum HOM05D003498 ORTHO05D004191 1.2e-26 123.6 80 73.8
Nitab4.5_0005699g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 1.2e-26 123.6 80 73.8
Solyc07g048010.4 Solanum lycopersicum HOM05D003498 ORTHO05D004191 1.2e-26 123.6 99 61.6
Sopen07g024440 Solanum pennellii HOM05D003498 ORTHO05D004191 1.2e-26 123.6 99 61.6
SEGI_21909 Sequoiadendron giganteum HOM05D003498 ORTHO05D004191 1.6e-26 123.2 79 73.4
PGSC0003DMG400006157 Solanum tuberosum HOM05D003498 ORTHO05D004191 1.6e-26 123.2 77 76.6
Peaxi162Scf00147g01820 Petunia axillaris HOM05D003498 ORTHO05D004191 2.0e-26 122.9 126 58.7
SMO201G0123 Selaginella moellendorffii HOM05D003498 ORTHO05D004191 2.0e-26 122.9 78 73.1
AUR62012113 Chenopodium quinoa HOM05D003498 ORTHO05D004191 2.7e-26 122.5 81 74.1
Cc07_g00530 Coffea canephora HOM05D003498 ORTHO05D004191 2.7e-26 122.5 84 71.4
Peaxi162Scf00776g00325 Petunia axillaris HOM05D003498 ORTHO05D004191 2.7e-26 122.5 86 70.9
Mapoly0001s0438 Marchantia polymorpha HOM05D003498 ORTHO05D004191 3.5e-26 122.1 82 70.7
CAN.G1461.1 Capsicum annuum HOM05D003498 ORTHO05D004191 5.9e-26 121.3 86 70.9
Pp3c13_20320 Physcomitrium patens HOM05D003498 ORTHO05D004191 1.1e-24 117.1 105 60.0
CBR_g30299 Chara braunii HOM05D003498 ORTHO05D004191 4.2e-24 115.2 77 67.5
DCAR_027394 Daucus carota HOM05D003498 ORTHO05D004191 2.1e-23 112.8 83 67.5
CBR_g50851 Chara braunii HOM05D003498 ORTHO05D004191 2.7e-23 112.5 77 66.2
AUR62034396 Chenopodium quinoa HOM05D003498 ORTHO05D004191 6.1e-23 111.3 113 54.9
AUR62040396 Chenopodium quinoa HOM05D000421 ORTHO05D004191 8.0e-23 110.9 102 57.8
PRCOL_00002439 Prasinoderma coloniale HOM05D003498 ORTHO05D004191 5.2e-22 108.2 75 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2546 Anthoceros agrestis HOM05D003498 ORTHO05D004191 1.2e-21 107.1 91 58.2
MCO11G310 Micromonas commoda HOM05D003498 ORTHO05D004191 3.4e-21 105.5 80 58.8
Cre03.g190800 Chlamydomonas reinhardtii HOM05D003498 ORTHO05D004191 9.8e-21 104.0 84 58.3
Cfa023828 Carpinus fangiana HOM05D003498 ORTHO05D004191 1.4e-19 100.1 75 62.7
Cre03.g190750 Chlamydomonas reinhardtii HOM05D003498 ORTHO05D004191 4.1e-19 98.6 121 45.5
AUR62033715 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.3e-17 93.6 64 68.8
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 2.9e-17 92.4 50 84.0
C05p26950 Brassica napus HOM05D003498 ORTHO05D004191 5.5e-16 88.2 99 57.6
CSS0025632 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 5.5e-16 88.2 111 49.5
BolC5t31414H Brassica oleracea HOM05D003498 ORTHO05D004191 1.6e-15 86.7 99 56.6
AUR62041023 Chenopodium quinoa HOM05D003498 ORTHO05D004191 2.6e-13 79.3 51 72.5
CSS0031931 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 7.5e-13 77.8 100 49.0
Haze_27494 Corylus avellana HOM05D003498 ORTHO05D004191 1.3e-12 77.0 92 44.6
Actinidia38210 Actinidia chinensis HOM05D003498 ORTHO05D004191 2.9e-09 65.9 39 74.4
HanXRQChr05g0130941 Helianthus annuus HOM05D003498 ORTHO05D004191 8.6e-09 64.3 39 74.4
BcaC05g26822 Brassica carinata HOM05D003498 ORTHO05D004191 1.9e-08 63.2 92 50.0
HanXRQChr10g0305081 Helianthus annuus HOM05D003498 ORTHO05D004191 3.3e-08 62.4 39 74.4
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.6e-07 60.1 28 92.9
TPR.G22201 Trifolium pratense HOM05D003498 ORTHO05D004191 6.1e-07 58.2 31 83.9
Aqoxy51s003 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 8.0e-07 57.8 32 78.1
HanXRQChr14g0428161 Helianthus annuus HOM05D003498 ORTHO05D004191 1.4e-06 57.0 35 74.3


User provided reference genes

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