Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0103s0010 Medicago truncatula HOM05D003236 ORTHO05D003620 4.6e-79 297.7 141 100.0
Medtr6g009130 Medicago truncatula HOM05D003236 ORTHO05D003620 1.1e-67 260.0 124 100.0
Medtr2g022600 Medicago truncatula HOM05D003236 ORTHO05D003620 2.0e-34 149.4 79 93.7
Medtr3g098750 Medicago truncatula HOM05D003236 ORTHO05D003620 2.0e-34 149.4 80 92.5
TPR.G7640 Trifolium pratense HOM05D003236 ORTHO05D003620 4.2e-32 141.7 79 84.8
Ca_00632_v3 Cicer arietinum L. HOM05D003236 ORTHO05D003620 8.7e-30 134.0 80 78.8
Lalb_Chr18g0056161 Lupinus albus HOM05D003236 ORTHO05D003620 7.4e-29 131.0 79 78.5
Lj6g0023183 Lotus japonicus HOM05D003236 ORTHO05D003620 1.6e-28 129.8 79 77.2
Sabra10G0147500 Salix brachista HOM05D003236 ORTHO05D003620 1.4e-27 126.7 78 75.6
Lalb_Chr15g0087401 Lupinus albus HOM05D003236 ORTHO05D003620 2.4e-27 125.9 79 75.9
Actinidia23501 Actinidia chinensis HOM05D003236 ORTHO05D003620 3.1e-27 125.6 79 72.2
Phvul.006G152000 Phaseolus vulgaris HOM05D003236 ORTHO05D003620 3.1e-27 125.6 79 77.2
arahy.Tifrunner.gnm1.ann1.4929ND Arachis hypogaea HOM05D003236 ORTHO05D003620 4.1e-27 125.2 79 77.2
arahy.Tifrunner.gnm1.ann1.IC6NPA Arachis hypogaea HOM05D000043 ORTHO05D001371 4.1e-27 125.2 79 77.2
Cc03_g03280 Coffea canephora HOM05D003236 ORTHO05D003620 5.3e-27 124.8 79 72.2
CANSAT56G0357 Cannabis sativa HOM05D003236 ORTHO05D003620 6.9e-27 124.4 79 74.7
HanXRQChr01g0028881 Helianthus annuus HOM05D003236 ORTHO05D003620 6.9e-27 124.4 88 64.8
Potri.010G191800 Populus trichocarpa HOM05D003236 ORTHO05D003620 9.1e-27 124.0 78 74.4
VMungo0540G1138 Vigna mungo HOM05D003236 ORTHO05D003620 1.5e-26 123.2 79 75.9
Cfa015952 Carpinus fangiana HOM05D003236 ORTHO05D003620 2.0e-26 122.9 80 70.0
Dinv38409 Davidia involucrata HOM05D003236 ORTHO05D003620 2.0e-26 122.9 79 69.6
Glyma.15G105400 Glycine max HOM05D003236 ORTHO05D003620 2.0e-26 122.9 79 74.7
CSS0018012 Camellia sinensis var. sinensis HOM05D003236 ORTHO05D003620 7.7e-26 120.9 79 68.4
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 7.7e-26 120.9 79 69.6
Sed0017985 Sechium edule HOM05D003236 ORTHO05D003620 7.7e-26 120.9 79 70.9
Haze_00167 Corylus avellana HOM05D003236 ORTHO05D003620 1.0e-25 120.6 80 68.8
Glyma.13G207200 Glycine max HOM05D003236 ORTHO05D003620 1.0e-25 120.6 94 66.0
Rhsim04G0203500 Rhododendron simsii HOM05D003236 ORTHO05D003620 1.0e-25 120.6 80 71.2
Ciclev10005413m.g Citrus clementina HOM05D003236 ORTHO05D003620 1.3e-25 120.2 79 70.9
Hma1.2p1_0995F.1_g245780 Hydrangea macrophylla HOM05D003236 ORTHO05D003620 1.3e-25 120.2 79 69.6
TAR362G0648 Trochodendron aralioides HOM05D003236 ORTHO05D003620 1.3e-25 120.2 79 69.6
CiPaw.01G161600 Carya illinoinensis HOM05D003236 ORTHO05D003620 2.2e-25 119.4 79 69.6
DCAR_027180 Daucus carota HOM05D003236 ORTHO05D003620 2.2e-25 119.4 79 68.4
Peaxi162Scf00069g01432 Petunia axillaris HOM05D003236 ORTHO05D003620 2.2e-25 119.4 77 72.7
Atru.chr4.2535 Acer truncatum HOM05D003236 ORTHO05D003620 3.8e-25 118.6 79 67.1
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 3.8e-25 118.6 79 69.6
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 3.8e-25 118.6 79 69.6
Lsat_1_v5_gn_1_50180 Lactuca sativa HOM05D003236 ORTHO05D003620 6.5e-25 117.9 79 68.4
ClCG05G011190 Citrullus lanatus HOM05D003236 ORTHO05D003620 8.5e-25 117.5 78 70.5
MELO3C006553.2 Cucumis melo HOM05D003236 ORTHO05D003620 8.5e-25 117.5 79 69.6
TWI53G0183 Tripterygium wilfordii HOM05D003236 ORTHO05D003620 8.5e-25 117.5 74 71.6
Ah.10g034980 Amaranthus hybridus HOM05D003236 ORTHO05D003620 1.1e-24 117.1 79 68.4
Duzib147G0392 Durio zibethinus HOM05D003236 ORTHO05D003620 1.1e-24 117.1 79 69.6
CsaV3_3G013580 Cucumis sativus L. HOM05D003236 ORTHO05D003620 1.4e-24 116.7 78 69.2
Hund19506 Selenicereus undatus HOM05D003236 ORTHO05D003620 1.4e-24 116.7 79 68.4
RcHm_v2.0_Chr4g0417501 Rosa chinensis HOM05D003236 ORTHO05D003620 3.2e-24 115.5 79 69.6
Peaxi162Scf00769g00032 Petunia axillaris HOM05D003236 ORTHO05D003620 4.2e-24 115.2 79 68.4
CiPaw.02G093600 Carya illinoinensis HOM05D003236 ORTHO05D003620 5.5e-24 114.8 80 65.0
Migut.G00306 Erythranthe guttata HOM05D003236 ORTHO05D003620 7.2e-24 114.4 79 63.3
PGSC0003DMG401004220 Solanum tuberosum HOM05D003236 ORTHO05D003620 7.2e-24 114.4 79 65.8
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 9.4e-24 114.0 79 65.8
Manes.08G075500 Manihot esculenta HOM05D003236 ORTHO05D003620 1.2e-23 113.6 79 63.3
Prupe.6G197600 Prunus persica HOM05D003236 ORTHO05D003620 1.6e-23 113.2 79 64.6
Eucgr.B01114 Eucalyptus grandis HOM05D003236 ORTHO05D003620 2.1e-23 112.8 79 64.6
RcHm_v2.0_Chr6g0272881 Rosa chinensis HOM05D003236 ORTHO05D003620 2.1e-23 112.8 79 68.4
Oeu030324.1 Olea europaea HOM05D003236 ORTHO05D003620 2.7e-23 112.5 79 63.3
EL10Ac2g04006 Beta vulgaris HOM05D003236 ORTHO05D003620 3.6e-23 112.1 79 60.8
Cpa.g.sc125.28 Carica papaya HOM05D003236 ORTHO05D003620 3.6e-23 112.1 78 66.7
MBI17_g13566_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 3.6e-23 112.1 78 67.9
CAN.G851.10 Capsicum annuum HOM05D003236 ORTHO05D003620 6.1e-23 111.3 79 64.6
MBI19_g44204_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 7.9e-23 110.9 98 54.1
Nitab4.5_0000321g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 7.9e-23 110.9 73 72.6
Nitab4.5_0006639g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 1.0e-22 110.5 73 71.2
Sabra16G0185700 Salix brachista HOM05D003236 ORTHO05D003620 1.4e-22 110.2 78 70.5
Nn4g26225 Nelumbo nucifera HOM05D003236 ORTHO05D003620 2.3e-22 109.4 78 64.1
PGR142G1056 Punica granatum HOM05D003236 ORTHO05D003620 2.3e-22 109.4 77 64.9
FAN08G2949 Fragaria x ananassa HOM05D003236 ORTHO05D003620 3.9e-22 108.6 79 64.6
Nitab4.5_0006333g0030 Nicotiana tabacum HOM05D003236 ORTHO05D003620 3.9e-22 108.6 73 68.5
MSTRG.10005 Avicennia marina HOM05D003236 ORTHO05D003620 5.1e-22 108.2 78 64.1
Prupe.6G171900 Prunus persica HOM05D003236 ORTHO05D003620 5.1e-22 108.2 83 59.0
Sed0022772 Sechium edule HOM05D003236 ORTHO05D003620 5.1e-22 108.2 79 64.6
Sc13g0004130 Simmondsia chinensis HOM05D003236 ORTHO05D003620 5.1e-22 108.2 79 62.0
TAR633G2542 Trochodendron aralioides HOM05D003236 ORTHO05D003620 8.8e-22 107.5 79 63.3
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 1.1e-21 107.1 74 66.2
HanXRQChr10g0286501 Helianthus annuus HOM05D003236 ORTHO05D003620 1.1e-21 107.1 79 60.8
Thecc.04G030700 Theobroma cacao HOM05D003236 ORTHO05D003620 1.1e-21 107.1 79 63.3
Aqoxy2G03298 Aquilegia oxysepala HOM05D003236 ORTHO05D003620 1.5e-21 106.7 79 62.0
FAN04G3165 Fragaria x ananassa HOM05D003236 ORTHO05D003620 2.6e-21 105.9 79 63.3
MD13G1185700 Malus domestica HOM05D003236 ORTHO05D003620 2.6e-21 105.9 79 58.2
FvH4_4g14820 Fragaria vesca HOM05D003236 ORTHO05D003620 3.3e-21 105.5 79 63.3
FAN12G2674 Fragaria x ananassa HOM05D003236 ORTHO05D003620 3.3e-21 105.5 79 63.3
RcHm_v2.0_Chr6g0272751 Rosa chinensis HOM05D003236 ORTHO05D003620 3.3e-21 105.5 79 64.6
Duzib187G1207 Durio zibethinus HOM05D003236 ORTHO05D003620 4.4e-21 105.1 78 60.3
Eucgr.B01115 Eucalyptus grandis HOM05D003236 ORTHO05D003620 4.4e-21 105.1 79 58.2
HanXRQChr11g0351171 Helianthus annuus HOM05D003236 ORTHO05D003620 4.4e-21 105.1 79 58.2
SalBow2G2662 Salvia bowleyana HOM05D003236 ORTHO05D003620 4.4e-21 105.1 78 61.5
ATR0626G169 Amborella trichopoda HOM05D003236 ORTHO05D003620 1.7e-20 103.2 79 55.7
Eucgr.B01113 Eucalyptus grandis HOM05D003236 ORTHO05D003620 1.7e-20 103.2 78 59.0
COL.COLO4_08743 Corchorus olitorius HOM05D003236 ORTHO05D003620 6.3e-20 101.3 79 62.0
Gohir.A05G340100 Gossypium hirsutum HOM05D003236 ORTHO05D003620 6.3e-20 101.3 78 56.4
Gohir.D04G078600 Gossypium hirsutum HOM05D003236 ORTHO05D003620 6.3e-20 101.3 78 56.4
Gorai.012G088500 Gossypium raimondii HOM05D003236 ORTHO05D003620 6.3e-20 101.3 78 56.4
Aa31LG5G16550 Aethionema arabicum HOM05D003236 ORTHO05D003620 1.4e-19 100.1 78 57.7
HanXRQChr11g0351371 Helianthus annuus HOM05D003236 ORTHO05D003620 1.4e-19 100.1 79 63.3
RcHm_v2.0_Chr6g0272861 Rosa chinensis HOM05D003236 ORTHO05D003620 1.4e-19 100.1 79 59.5
SEGI_23586 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 2.4e-19 99.4 79 51.9
C05p61190 Brassica napus HOM05D003236 ORTHO05D003620 3.1e-19 99.0 78 57.7
BolC5t34779H Brassica oleracea HOM05D003236 ORTHO05D003620 3.1e-19 99.0 78 57.7
BraA05t22916Z Brassica rapa HOM05D003236 ORTHO05D003620 3.1e-19 99.0 78 57.7
A05p41940 Brassica napus HOM05D003236 ORTHO05D003620 4.1e-19 98.6 78 57.7
Sp3g05010 Schrenkiella parvula HOM05D003236 ORTHO05D003620 4.1e-19 98.6 78 59.0
ECA248G2845 Erigeron canadensis HOM05D003236 ORTHO05D003620 5.3e-19 98.2 79 57.0
GSVIVG01017907001 Vitis vinifera HOM05D003236 ORTHO05D003620 5.3e-19 98.2 80 55.0
Nitab4.5_0010073g0020 Nicotiana tabacum HOM05D003236 ORTHO05D003620 6.9e-19 97.8 67 68.7
Zm00001eb251870 Zea mays HOM05D003236 ORTHO05D003620 6.9e-19 97.8 79 55.7
AT3G06060 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 9.1e-19 97.4 78 57.7
SGA_v2.0_scaffold39G15309 Striga asiatica HOM05D003236 ORTHO05D003620 9.1e-19 97.4 77 59.7
Zm00001eb188220 Zea mays HOM05D003236 ORTHO05D003620 9.1e-19 97.4 79 54.4
BcaC05g30061 Brassica carinata HOM05D003236 ORTHO05D003620 1.2e-18 97.1 78 56.4
Lsat_1_v5_gn_4_32481 Lactuca sativa HOM05D003236 ORTHO05D003620 1.5e-18 96.7 68 66.2
Carub.0003s0550 Capsella rubella HOM05D003236 ORTHO05D003620 2.0e-18 96.3 78 57.7
SGA_v2.0_scaffold166G38366 Striga asiatica HOM05D003236 ORTHO05D003620 2.0e-18 96.3 75 60.0
CARHR080570 Cardamine hirsuta HOM05D003236 ORTHO05D003620 2.6e-18 95.9 76 57.9
Thhalv10021124m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 2.6e-18 95.9 78 56.4
Os02g0701900 Oryza sativa ssp. japonica HOM05D003236 ORTHO05D003620 3.4e-18 95.5 79 54.4
Hund19505 Selenicereus undatus HOM05D003236 ORTHO05D003620 3.4e-18 95.5 78 57.7
THA.LOC104818806 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 5.9e-18 94.7 78 55.1
RcHm_v2.0_Chr6g0272831 Rosa chinensis HOM05D003236 ORTHO05D003620 1.3e-17 93.6 86 55.8
THA.LOC104822305 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 1.3e-17 93.6 78 55.1
Nitab4.5_0008223g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 8.5e-17 90.9 66 65.2
Rhsim02G0180400 Rhododendron simsii HOM05D003236 ORTHO05D003620 8.5e-17 90.9 66 69.7
AUR62009269 Chenopodium quinoa HOM05D003236 ORTHO05D003620 1.4e-16 90.1 72 61.1
Thecc.04G224800 Theobroma cacao HOM05D003236 ORTHO05D003620 1.9e-16 89.7 79 54.4
AUR62042438 Chenopodium quinoa HOM05D003236 ORTHO05D003620 3.2e-16 89.0 67 64.2
Gohir.D05G232700 Gossypium hirsutum HOM05D003236 ORTHO05D003620 1.2e-15 87.0 73 57.5
Rhsim10G0177500 Rhododendron simsii HOM05D003236 ORTHO05D003620 1.2e-15 87.0 65 66.2
Duzib114G0214 Durio zibethinus HOM05D003236 ORTHO05D003620 1.6e-15 86.7 75 54.7
Gohir.A05G230300 Gossypium hirsutum HOM05D003236 ORTHO05D003620 1.6e-15 86.7 73 57.5
Gorai.009G240900 Gossypium raimondii HOM05D003236 ORTHO05D003620 1.6e-15 86.7 73 56.2
PSO017G3704 Papaver somniferum HOM05D003236 ORTHO05D003620 1.6e-15 86.7 77 53.2
PSO478G0559 Papaver somniferum HOM05D003236 ORTHO05D003620 1.6e-15 86.7 77 53.2
AL6G30650 Arabidopsis lyrata HOM05D003236 ORTHO05D003620 2.1e-15 86.3 79 46.8
Lalb_Chr20g0118501 Lupinus albus HOM05D003236 ORTHO05D003620 3.6e-15 85.5 60 66.7
COL.COLO4_20855 Corchorus olitorius HOM05D003236 ORTHO05D003620 4.7e-15 85.1 79 50.6
Duzib199G0002 Durio zibethinus HOM05D003236 ORTHO05D003620 4.7e-15 85.1 75 53.3
BcaB08g36592 Brassica carinata HOM05D003236 ORTHO05D003620 6.1e-15 84.7 79 48.1
AT5G19200 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 7.9e-15 84.3 79 46.8
COL.COLO4_26632 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.3e-14 82.8 79 53.2
RcHm_v2.0_Chr6g0272851 Rosa chinensis HOM05D003236 ORTHO05D003620 3.0e-14 82.4 61 65.6
BolC9t58571H Brassica oleracea HOM05D003236 ORTHO05D003620 3.9e-14 82.0 79 48.1
Thecc.04G224900 Theobroma cacao HOM05D003236 ORTHO05D003620 5.2e-14 81.6 67 61.2
COL.COLO4_00130 Corchorus olitorius HOM05D003236 ORTHO05D003620 8.8e-14 80.9 79 49.4
Haze_00534 Corylus avellana HOM05D003236 ORTHO05D003620 8.8e-14 80.9 55 69.1
Gorai.N027600 Gossypium raimondii HOM05D003236 ORTHO05D003620 2.0e-13 79.7 79 50.6
Gohir.A05G230350 Gossypium hirsutum HOM05D003236 ORTHO05D003620 2.6e-13 79.3 79 50.6
Gohir.D05G232800 Gossypium hirsutum HOM05D003236 ORTHO05D003620 9.7e-13 77.4 79 49.4
AagrBONN_evm.TU.Sc2ySwM_344.2320 Anthoceros agrestis HOM05D003236 ORTHO05D003620 1.3e-12 77.0 79 44.3
COL.COLO4_20849 Corchorus olitorius HOM05D003236 ORTHO05D003620 1.3e-12 77.0 79 48.1
A10p20430 Brassica napus HOM05D003236 ORTHO05D003620 2.2e-12 76.3 77 45.5
Carub.0006s1753 Capsella rubella HOM05D003236 ORTHO05D003620 8.2e-12 74.3 79 43.0
C09p57040 Brassica napus HOM05D003236 ORTHO05D003620 1.1e-11 73.9 79 46.8
CDE05G0037 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 1.1e-11 73.9 66 56.1
Sp6g25180 Schrenkiella parvula HOM05D003236 ORTHO05D008795 4.1e-11 72.0 71 46.5
COL.COLO4_05385 Corchorus olitorius HOM05D003236 ORTHO05D003620 7.0e-11 71.2 79 48.1
Mapoly0005s0172 Marchantia polymorpha HOM05D003236 ORTHO05D003620 1.7e-09 66.6 80 41.2
Pp3c22_14290 Physcomitrium patens HOM05D003236 ORTHO05D003620 2.9e-09 65.9 66 47.0
Gorai.013G194000 Gossypium raimondii HOM05D003236 ORTHO05D003620 6.5e-09 64.7 66 48.5
PSO832G4100 Papaver somniferum HOM05D003236 ORTHO05D003620 6.5e-09 64.7 68 44.1
PSO210G7458 Papaver somniferum HOM05D003236 ORTHO05D003620 1.5e-08 63.5 68 42.6
BcaB08g36593 Brassica carinata HOM05D003236 ORTHO05D003620 1.2e-07 60.5 65 47.7
CBR_g32182 Chara braunii HOM05D003236 ORTHO05D003620 2.1e-07 59.7 75 37.3
BcaC04g18588 Brassica carinata HOM05D003236 ORTHO05D003620 1.4e-06 57.0 65 47.7
HPP92_015138 Vanilla planifolia HOM05D003236 ORTHO05D003620 1.4e-06 57.0 49 55.1


User provided reference genes

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