Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MapolyY_A0049 Marchantia polymorpha HOM05D004343 ORTHO05D005695 2.0e-91 339.0 161 100.0
SMO165G0116 Selaginella moellendorffii HOM05D004343 ORTHO05D005695 1.6e-40 169.9 168 47.6
PRCOL_00005596 Prasinoderma coloniale HOM05D004343 ORTHO05D005695 4.0e-39 165.2 172 44.2
AagrBONN_evm.TU.Sc2ySwM_344.4714 Anthoceros agrestis HOM05D004343 ORTHO05D005695 2.4e-15 86.3 139 36.7
Cre01.g035500 Chlamydomonas reinhardtii HOM05D004343 ORTHO05D005695 4.2e-12 75.5 47 66.0
SMO134G0165 Selaginella moellendorffii HOM05D004343 ORTHO05D005695 9.4e-12 74.3 52 57.7
Haze_12200 Corylus avellana HOM05D004343 ORTHO05D005695 1.2e-11 73.9 74 45.9
Cfa009167 Carpinus fangiana HOM05D004343 ORTHO05D005695 1.6e-11 73.6 74 45.9
Lj6A807T88 Lonicera japonica HOM05D004343 ORTHO05D005695 2.1e-11 73.2 54 57.4
Atru.chr11.2050 Acer truncatum HOM05D004343 ORTHO05D005695 3.6e-11 72.4 54 55.6
Ciclev10030717m.g Citrus clementina HOM05D004343 ORTHO05D005695 3.6e-11 72.4 54 55.6
ECA246G3761 Erigeron canadensis HOM05D004343 ORTHO05D005695 3.6e-11 72.4 54 55.6
HanXRQChr14g0446801 Helianthus annuus HOM05D004343 ORTHO05D005695 3.6e-11 72.4 54 55.6
PRCOL_00000780 Prasinoderma coloniale HOM05D004343 ORTHO05D005695 3.6e-11 72.4 46 60.9
Cfa022200 Carpinus fangiana HOM05D004343 ORTHO05D005695 4.7e-11 72.0 83 39.8
Duzib251G0882 Durio zibethinus HOM05D004343 ORTHO05D005695 4.7e-11 72.0 54 55.6
Mapoly0003s0185 Marchantia polymorpha HOM05D004343 ORTHO05D005695 4.7e-11 72.0 52 59.6
TPR.G21086 Trifolium pratense HOM05D004343 ORTHO05D005695 4.7e-11 72.0 54 55.6
Actinidia15052 Actinidia chinensis HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 55.6
Ah.03g132780 Amaranthus hybridus HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 57.4
Aqoxy3G02910 Aquilegia oxysepala HOM05D004343 ORTHO05D005695 6.1e-11 71.6 55 54.5
EL10Ac6g13693 Beta vulgaris HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 57.4
CAN.G1905.4 Capsicum annuum HOM05D004343 ORTHO05D005695 6.1e-11 71.6 55 54.5
AUR62005396 Chenopodium quinoa HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 57.4
AUR62014058 Chenopodium quinoa HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 57.4
Ca_03146_v3 Cicer arietinum L. HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 55.6
FAN07G1173 Fragaria x ananassa HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 55.6
FAN17G1932 Fragaria x ananassa HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 55.6
FAN22G1014 Fragaria x ananassa HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 55.6
Glyma.04G094500 Glycine max HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 55.6
Glyma.06G096300 Glycine max HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 55.6
Lj2g0023088 Lotus japonicus HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 55.6
Nitab4.5_0000147g0050 Nicotiana tabacum HOM05D004343 ORTHO05D005695 6.1e-11 71.6 55 54.5
Peaxi162Scf01286g00001 Petunia axillaris HOM05D004343 ORTHO05D005695 6.1e-11 71.6 55 54.5
Phvul.002G070100 Phaseolus vulgaris HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 55.6
RcHm_v2.0_Chr4g0443651 Rosa chinensis HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 55.6
Hund25360 Selenicereus undatus HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 57.4
Sc04g0009240 Simmondsia chinensis HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 57.4
Solyc04g015350.3 Solanum lycopersicum HOM05D004343 ORTHO05D005695 6.1e-11 71.6 55 54.5
Sopen04g007420 Solanum pennellii HOM05D004343 ORTHO05D005695 6.1e-11 71.6 55 54.5
VMungo1215G0144 Vigna mungo HOM05D004343 ORTHO05D005695 6.1e-11 71.6 54 55.6
arahy.Tifrunner.gnm1.ann1.NH5LZK Arachis hypogaea HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
arahy.Tifrunner.gnm1.ann1.V3QVP0 Arachis hypogaea HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
CSS0036353 Camellia sinensis var. sinensis HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Cpa.g.sc69.63 Carica papaya HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
CiPaw.06G071000 Carya illinoinensis HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
ClCG08G018000 Citrullus lanatus HOM05D004343 ORTHO05D005695 8.0e-11 71.2 48 60.4
COL.COLO4_24195 Corchorus olitorius HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
MELO3C010667.2 Cucumis melo HOM05D004343 ORTHO05D005695 8.0e-11 71.2 48 60.4
CsaV3_2G024650 Cucumis sativus L. HOM05D004343 ORTHO05D005695 8.0e-11 71.2 48 60.4
DCAR_018086 Daucus carota HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Dinv15280 Davidia involucrata HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Dinv24834 Davidia involucrata HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Duzib268G1271 Durio zibethinus HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
FvH4_4g34140 Fragaria vesca HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 53.7
FAN12G0317 Fragaria x ananassa HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 53.7
Gohir.D01G149200 Gossypium hirsutum HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Gorai.002G185300 Gossypium raimondii HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
HanXRQChr17g0539451 Helianthus annuus HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Hma1.2p1_0160F.1_g070980 Hydrangea macrophylla HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Hma1.2p1_0536F.1_g173910 Hydrangea macrophylla HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Lsat_1_v5_gn_4_161060 Lactuca sativa HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Lalb_Chr09g0326321 Lupinus albus HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
MBI16_g27084_MAGBIO Magnolia biondii HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Manes.12G027200 Manihot esculenta HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Nn2g14843 Nelumbo nucifera HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Prupe.1G251400 Prunus persica HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
QL03p059677 Quercus lobata HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Rhsim12G0115800 Rhododendron simsii HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
Sed0015591 Sechium edule HOM05D004343 ORTHO05D005695 8.0e-11 71.2 48 60.4
TWI36G0660 Tripterygium wilfordii HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
TWI75G1525 Tripterygium wilfordii HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
TAR371G0394 Trochodendron aralioides HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
TAR622G0032 Trochodendron aralioides HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
vmacro16235 Vaccinium macrocarpon HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
HPP92_021388 Vanilla planifolia HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
GSVIVG01013767001 Vitis vinifera HOM05D004343 ORTHO05D005695 8.0e-11 71.2 54 55.6
MSTRG.6617 Avicennia marina HOM05D004343 ORTHO05D005695 1.0e-10 70.9 54 55.6
CANSAT01G0446 Cannabis sativa HOM05D004343 ORTHO05D005695 1.0e-10 70.9 54 55.6
Thhalv10023282m.g Eutrema salsugineum HOM05D004343 ORTHO05D005695 1.0e-10 70.9 54 55.6
Oeu022146.1 Olea europaea HOM05D004343 ORTHO05D005695 1.0e-10 70.9 54 55.6
Oeu054064.1 Olea europaea HOM05D004343 ORTHO05D005695 1.0e-10 70.9 54 55.6
SalBow8G4047 Salvia bowleyana HOM05D004343 ORTHO05D005695 1.0e-10 70.9 54 55.6
SGA_v2.0_scaffold181G39704 Striga asiatica HOM05D004343 ORTHO05D005695 1.0e-10 70.9 54 55.6
AagrBONN_evm.TU.Sc2ySwM_228.633 Anthoceros agrestis HOM05D004343 ORTHO05D005695 1.4e-10 70.5 52 55.8
MCO10G171 Micromonas commoda HOM05D004343 ORTHO05D005695 1.4e-10 70.5 47 61.7
Eucgr.B01666 Eucalyptus grandis HOM05D004343 ORTHO05D005695 1.8e-10 70.1 54 53.7
Eucgr.B01668 Eucalyptus grandis HOM05D004343 ORTHO05D005695 1.8e-10 70.1 54 53.7
Eucgr.H02571 Eucalyptus grandis HOM05D004343 ORTHO05D005695 1.8e-10 70.1 54 53.7
Medtr5g034120 Medicago truncatula HOM05D004343 ORTHO05D005695 1.8e-10 70.1 52 55.8
PSO675G7676 Papaver somniferum HOM05D004343 ORTHO05D005695 1.8e-10 70.1 48 58.3
Pp3c10_8910 Physcomitrium patens HOM05D004343 ORTHO05D005695 1.8e-10 70.1 52 55.8
Psat2g104920 Pisum sativum HOM05D004343 ORTHO05D005695 1.8e-10 70.1 52 55.8
PGR119G1808 Punica granatum HOM05D004343 ORTHO05D005695 1.8e-10 70.1 54 53.7
CDE05G0167 Ceratophyllum demersum HOM05D004343 ORTHO05D005695 2.3e-10 69.7 52 55.8
Migut.M00070 Erythranthe guttata HOM05D004343 ORTHO05D005695 2.3e-10 69.7 54 53.7
Lalb_Chr05g0216791 Lupinus albus HOM05D004343 ORTHO05D005695 2.3e-10 69.7 52 55.8
MD13G1093900 Malus domestica HOM05D004343 ORTHO05D005695 2.3e-10 69.7 54 55.6
MD16G1095200 Malus domestica HOM05D004343 ORTHO05D005695 2.3e-10 69.7 54 55.6
Potri.012G075100 Populus trichocarpa HOM05D004343 ORTHO05D005695 2.3e-10 69.7 52 57.7
Thecc.02G252600 Theobroma cacao HOM05D004343 ORTHO05D005695 2.3e-10 69.7 52 55.8
ATR0624G072 Amborella trichopoda HOM05D004343 ORTHO05D005695 3.0e-10 69.3 52 53.8
Cc11_g15270 Coffea canephora HOM05D004343 ORTHO05D005695 3.9e-10 68.9 54 53.7
Sabra15G0094700 Salix brachista HOM05D004343 ORTHO05D005695 5.2e-10 68.6 52 57.7
Sp2g04240 Schrenkiella parvula HOM05D004343 ORTHO05D005695 5.2e-10 68.6 54 53.7
Atru.chr13.1904 Acer truncatum HOM05D004343 ORTHO05D005695 6.7e-10 68.2 52 53.8
Aa31LG2G9960 Aethionema arabicum HOM05D004343 ORTHO05D005695 8.8e-10 67.8 54 53.7
BcaB07g31219 Brassica carinata HOM05D004343 ORTHO05D005695 8.8e-10 67.8 54 53.7
BcaC04g22231 Brassica carinata HOM05D004343 ORTHO05D005695 8.8e-10 67.8 54 53.7
A09p17490 Brassica napus HOM05D004343 ORTHO05D005695 8.8e-10 67.8 54 53.7
C09p21800 Brassica napus HOM05D004343 ORTHO05D005695 8.8e-10 67.8 54 53.7
BolC9t55085H Brassica oleracea HOM05D004343 ORTHO05D005695 8.8e-10 67.8 54 53.7
BraA09t37375Z Brassica rapa HOM05D004343 ORTHO05D005695 8.8e-10 67.8 54 53.7
CARHR052540 Cardamine hirsuta HOM05D004343 ORTHO05D005695 8.8e-10 67.8 54 53.7
Os08g0307400 Oryza sativa ssp. japonica HOM05D004343 ORTHO05D005695 8.8e-10 67.8 52 51.9
THA.LOC104823649 Tarenaya hassleriana HOM05D004343 ORTHO05D005695 8.8e-10 67.8 54 53.7
SMO228G0017 Selaginella moellendorffii HOM05D004343 ORTHO05D005695 1.5e-09 67.0 50 58.0
THA.LOC104809607 Tarenaya hassleriana HOM05D004343 ORTHO05D005695 1.5e-09 67.0 54 53.7
AL2G16200 Arabidopsis lyrata HOM05D004343 ORTHO05D005695 2.0e-09 66.6 54 51.9
AT1G60490 Arabidopsis thaliana HOM05D004343 ORTHO05D005695 2.0e-09 66.6 54 51.9
BcaC06g31812 Brassica carinata HOM05D004343 ORTHO05D005695 2.0e-09 66.6 54 51.9
C05p51050 Brassica napus HOM05D004343 ORTHO05D005695 2.0e-09 66.6 54 51.9
Carub.0002s0485 Capsella rubella HOM05D004343 ORTHO05D005695 2.0e-09 66.6 54 51.9
Zm00001eb178330 Zea mays HOM05D004343 ORTHO05D005695 2.0e-09 66.6 52 55.8
Os05g0180600 Oryza sativa ssp. japonica HOM05D004343 ORTHO05D005695 2.6e-09 66.2 46 60.9
BcaC02g10625 Brassica carinata HOM05D004343 ORTHO05D005695 1.7e-08 63.5 54 50.0
C04p25940 Brassica napus HOM05D004343 ORTHO05D005695 1.7e-08 63.5 54 50.0
GSVIVG01031931001 Vitis vinifera HOM05D003089 ORTHO05D003544 7.7e-06 54.7 92 37.0


User provided reference genes

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