Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.2e-228 796.2 397 100.0
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.5e-215 752.7 392 96.4
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.8e-160 569.7 303 94.1
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 5.6e-66 255.8 342 43.6
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.5e-58 231.1 245 47.3
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 3.4e-55 219.9 224 50.0
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 5.3e-48 196.1 241 41.1
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 3.5e-44 183.3 283 38.2
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 4.6e-44 183.0 294 36.4
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.5e-42 177.9 290 36.2
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 4.3e-42 176.4 284 37.0
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 7.4e-42 175.6 313 34.2
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.6e-41 174.5 311 34.1
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 3.7e-41 173.3 283 37.1
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 4.8e-41 172.9 284 35.9
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.8e-40 171.0 291 34.4
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.8e-40 171.0 283 35.3
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 2.4e-40 170.6 309 35.3
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 5.3e-40 169.5 284 34.9
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 5.3e-40 169.5 281 35.6
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 5.3e-40 169.5 323 34.7
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 6.9e-40 169.1 304 35.2
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 9.0e-40 168.7 288 35.8
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 9.0e-40 168.7 294 36.1
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.0e-39 167.5 287 35.9
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 2.6e-39 167.2 288 35.4
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 3.4e-39 166.8 282 34.4
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 4.5e-39 166.4 288 35.1
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 4.5e-39 166.4 308 34.1
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 7.6e-39 165.6 308 33.4
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.0e-38 165.2 280 34.3
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.0e-38 165.2 280 35.0
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.3e-38 164.9 309 34.6
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.3e-38 164.9 302 34.1
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.7e-38 164.5 303 35.6
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.7e-38 164.5 303 35.6
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 2.2e-38 164.1 280 35.7
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.9e-38 163.7 281 35.2
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.9e-38 163.7 302 35.4
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 3.8e-38 163.3 292 36.3
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 8.4e-38 162.2 281 34.2
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.1e-37 161.8 305 31.8
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 1.9e-37 161.0 310 32.9
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.9e-37 161.0 280 34.6
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.2e-37 160.2 291 33.7
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 3.2e-37 160.2 310 34.2
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 5.5e-37 159.5 279 33.7
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 7.1e-37 159.1 294 35.7
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 9.3e-37 158.7 337 32.3
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.2e-36 158.3 280 33.9
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.2e-36 158.3 322 32.0
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 1.2e-36 158.3 281 32.7
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.2e-36 158.3 292 34.2
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.6e-36 157.9 284 33.1
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.6e-36 157.9 291 33.0
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 2.1e-36 157.5 291 33.7
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.1e-36 157.5 289 34.3
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 2.7e-36 157.1 279 34.4
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 3.5e-36 156.8 373 33.0
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 6.1e-36 156.0 332 31.6
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.3e-35 154.8 339 31.0
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.8e-35 154.5 281 33.5
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.3e-35 154.1 283 34.3
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.3e-35 154.1 297 34.3
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 2.3e-35 154.1 280 33.9
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 3.0e-35 153.7 291 31.3
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 5.1e-35 152.9 279 33.0
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 6.7e-35 152.5 301 33.6
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.1e-34 151.8 330 31.5
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.5e-34 151.4 288 31.9
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.9e-34 151.0 280 32.9
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 2.5e-34 150.6 290 34.1
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 2.5e-34 150.6 280 32.9
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 3.3e-34 150.2 279 34.8
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 4.3e-34 149.8 316 32.3
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.3e-34 149.8 286 34.3
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.7e-34 149.4 314 31.8
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 9.7e-34 148.7 302 29.8
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 9.7e-34 148.7 302 29.8
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 9.7e-34 148.7 302 29.8
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 1.3e-33 148.3 289 32.5
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 1.3e-33 148.3 281 34.5
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.2e-33 147.5 279 34.4
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 2.8e-33 147.1 308 32.1
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 2.8e-33 147.1 302 29.5
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 2.8e-33 147.1 302 29.5
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 2.8e-33 147.1 321 31.8
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 2.8e-33 147.1 284 33.1
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 8.2e-33 145.6 288 32.6
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.4e-32 144.8 309 32.7
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.4e-32 144.8 284 32.0
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 4.1e-32 143.3 292 31.8
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 6.9e-32 142.5 285 31.2
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 2.0e-31 141.0 282 30.5
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.4e-31 140.2 242 34.3
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 5.9e-31 139.4 339 29.5
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.0e-30 138.7 329 31.3
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.0e-30 138.7 317 31.2
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.0e-30 138.7 252 35.3
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.3e-30 138.3 284 33.5
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.7e-30 137.9 284 31.3
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 3.8e-30 136.7 378 26.7
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 5.0e-30 136.3 301 31.2
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 4.2e-29 133.3 291 32.3
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 5.5e-29 132.9 368 28.0
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 1.2e-28 131.7 288 32.3
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 2.1e-28 131.0 285 31.2
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 3.9e-27 126.7 285 30.9
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 5.1e-27 126.3 283 31.8
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-26 123.2 300 27.7
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.3e-26 123.2 250 31.6
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 7.4e-26 122.5 161 41.6
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 5.3e-24 116.3 284 29.9
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 9.1e-24 115.5 248 29.8
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 1.4e-21 108.2 132 42.4
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.9e-21 107.8 280 28.6
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 2.1e-20 104.4 153 37.3
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.0e-19 102.1 331 24.8
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 3.9e-19 100.1 240 31.2
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 4.4e-18 96.7 248 27.0
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.4e-16 90.9 211 29.4
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 4.0e-11 73.6 171 30.4
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-10 72.0 191 30.4
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 2.0e-10 71.2 93 40.9
MCO05G196 Micromonas commoda HOM05D004947 ORTHO05D006077 4.4e-10 70.1 214 27.1
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 5.7e-10 69.7 154 31.8
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.4e-08 65.1 82 37.8
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.4e-08 65.1 82 37.8
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.1e-08 63.9 117 30.8
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 3.1e-08 63.9 148 31.1
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.1e-08 63.5 117 30.8
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.2e-07 62.0 151 31.1
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 3.5e-07 60.5 116 30.2
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 1.7e-06 58.2 170 27.6
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 8.5e-06 55.8 96 35.4


User provided reference genes

Program Settings