Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 0.0e+00 1935.6 985 100.0
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 2.7e-287 992.3 898 56.3
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 9.7e-277 957.2 896 53.7
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 7.2e-272 941.0 896 53.9
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 1.0e-270 937.2 935 51.2
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 1.5e-269 933.3 946 52.0
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 1.3e-268 930.2 903 53.3
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.7e-268 929.9 904 53.1
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 1.7e-268 929.9 895 53.0
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 2.8e-268 929.1 893 54.0
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 3.7e-268 928.7 920 52.2
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 4.8e-268 928.3 911 51.7
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 4.8e-268 928.3 898 53.6
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 6.3e-268 927.9 941 50.9
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 1.1e-267 927.2 899 52.7
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 5.3e-267 924.9 899 52.9
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 9.1e-267 924.1 910 52.6
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 9.1e-267 924.1 898 52.4
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 3.5e-266 922.2 884 52.4
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 5.9e-266 921.4 922 51.4
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 5.9e-266 921.4 901 52.1
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 1.3e-265 920.2 900 53.1
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 2.2e-265 919.5 903 52.7
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 3.8e-265 918.7 892 52.8
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 3.8e-265 918.7 894 52.6
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 3.8e-265 918.7 897 52.6
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 5.0e-265 918.3 906 52.0
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 6.5e-265 917.9 903 51.6
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 1.9e-264 916.4 903 52.0
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 3.2e-264 915.6 902 52.2
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 3.2e-264 915.6 900 52.6
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 5.5e-264 914.8 905 51.8
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 9.4e-264 914.1 917 52.1
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 1.6e-263 913.3 902 52.3
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 1.6e-263 913.3 896 51.8
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 1.4e-262 910.2 908 52.0
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 3.0e-262 909.1 914 51.6
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 6.7e-262 907.9 893 51.8
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 8.8e-262 907.5 894 52.2
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 2.0e-261 906.4 940 50.1
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 2.0e-261 906.4 891 52.4
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 4.4e-261 905.2 937 51.5
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 4.4e-261 905.2 903 51.5
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 5.7e-261 904.8 891 51.6
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 5.7e-261 904.8 884 51.9
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 7.5e-261 904.4 951 50.2
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 7.5e-261 904.4 904 52.3
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 1.3e-260 903.7 957 50.1
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 1.7e-260 903.3 940 50.0
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 1.7e-260 903.3 891 52.2
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 1.7e-260 903.3 925 50.8
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 3.7e-260 902.1 902 51.7
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 4.8e-260 901.7 902 51.4
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 6.3e-260 901.4 905 51.5
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 8.3e-260 901.0 891 52.0
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 8.3e-260 901.0 889 51.3
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 1.4e-259 900.2 883 51.6
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 1.4e-259 900.2 902 51.6
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 1.4e-259 900.2 915 51.0
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 2.4e-259 899.4 905 51.2
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 4.1e-259 898.7 926 51.1
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 2.0e-258 896.3 900 51.1
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 3.5e-258 895.6 905 50.6
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.7e-257 893.3 910 51.1
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.2e-257 892.9 904 51.7
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.9e-257 892.5 909 51.0
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 8.5e-257 891.0 902 51.0
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 1.6e-255 886.7 891 51.5
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 6.1e-255 884.8 967 49.1
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 1.2e-253 880.6 930 50.5
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 1.3e-252 877.1 930 50.3
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 2.2e-252 876.3 891 50.8
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 2.2e-252 876.3 921 49.7
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 8.3e-252 874.4 903 51.1
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 2.4e-251 872.8 1010 46.9
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 5.4e-251 871.7 903 51.5
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 1.2e-250 870.5 894 50.4
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 5.5e-248 861.7 899 50.5
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 6.1e-247 858.2 906 50.3
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 1.8e-246 856.7 929 49.2
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 6.8e-246 854.7 943 48.6
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 6.8e-246 854.7 886 50.6
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 4.4e-245 852.0 938 48.7
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 2.4e-243 846.3 931 49.7
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 1.9e-240 836.6 859 50.2
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 3.3e-240 835.9 903 49.5
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 4.3e-240 835.5 892 50.1
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 1.4e-238 830.5 924 48.2
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 1.3e-236 823.9 893 48.8
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 4.6e-234 815.5 902 48.4
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 9.5e-232 807.7 956 46.0
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 9.5e-232 807.7 823 51.9
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 8.0e-231 804.7 835 50.7
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 1.5e-229 800.4 834 49.4
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 5.6e-224 781.9 900 47.8
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 7.8e-210 734.9 924 47.0
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 3.1e-198 696.4 876 45.1
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 4.9e-196 689.1 724 49.9
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 2.4e-195 686.8 713 52.2
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 3.8e-188 662.9 618 57.3
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 3.3e-184 649.8 804 45.9
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 4.5e-173 612.8 623 52.3
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 4.8e-167 592.8 670 48.7
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.5e-165 586.3 564 52.0
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.2e-164 583.9 576 51.0
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 2.5e-155 553.9 585 50.8
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 6.3e-151 539.3 565 50.1
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 8.5e-140 502.3 548 49.3
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 9.4e-139 498.8 513 49.7
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 9.2e-126 455.7 458 51.1
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 4.3e-123 446.8 896 35.3
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 1.3e-119 435.3 418 53.6
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 2.1e-114 417.9 405 50.9
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 2.4e-94 351.3 302 56.0
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.9e-76 290.8 240 60.0
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 9.0e-73 279.6 269 52.8
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 3.2e-70 271.2 247 53.4
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.8e-60 238.8 220 53.6
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 2.4e-57 228.4 187 58.8
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.6e-56 224.9 309 45.0
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 2.7e-53 214.9 205 56.1
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 4.6e-53 214.2 253 48.6
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 1.1e-41 176.4 250 40.4
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.2e-29 136.3 92 68.5
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-27 129.8 265 36.6
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 8.3e-26 123.6 235 36.2
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 5.0e-23 114.4 139 44.6
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 4.7e-21 107.8 419 23.6
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 3.5e-16 91.7 58 74.1
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 5.0e-15 87.8 59 67.8
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 3.7e-10 71.6 232 28.4
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 1.6e-08 66.2 70 45.7
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 5.0e-07 61.2 82 42.7
CBR_g45572 Chara braunii HOM05D000785 ORTHO05D000231 7.3e-06 57.4 137 35.0


User provided reference genes

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