Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 6.3e-236 820.5 435 100.0
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 1.5e-125 453.8 270 85.9
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 1.0e-124 451.1 303 78.2
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 9.4e-115 417.9 285 74.0
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 9.4e-115 417.9 302 73.2
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 2.5e-112 409.8 250 85.6
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 3.1e-110 402.9 317 67.8
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 1.9e-107 393.7 291 70.8
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 4.7e-106 389.0 259 76.1
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 2.3e-105 386.7 265 74.3
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 6.7e-105 385.2 258 75.6
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 8.8e-105 384.8 285 69.1
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 1.5e-104 384.0 263 74.5
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 2.6e-104 383.3 310 66.8
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 2.6e-104 383.3 347 61.4
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 3.3e-104 382.9 261 74.7
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 4.4e-104 382.5 366 59.3
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 7.4e-104 381.7 341 60.7
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 7.4e-104 381.7 347 61.1
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 2.2e-103 380.2 331 62.8
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 2.2e-103 380.2 263 73.4
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 2.2e-103 380.2 310 66.5
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 3.7e-103 379.4 288 68.1
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 8.2e-103 378.3 262 74.4
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 1.4e-102 377.5 311 65.3
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 1.8e-102 377.1 290 69.0
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 1.8e-102 377.1 318 64.2
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 2.4e-102 376.7 258 74.8
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 2.4e-102 376.7 258 75.2
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 2.4e-102 376.7 258 75.2
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 3.1e-102 376.3 262 74.0
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 3.1e-102 376.3 290 69.0
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 4.1e-102 375.9 308 65.6
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 5.3e-102 375.6 286 68.9
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 7.0e-102 375.2 302 66.2
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 9.1e-102 374.8 258 74.4
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 1.2e-101 374.4 302 65.9
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 1.2e-101 374.4 302 65.9
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 1.2e-101 374.4 262 73.3
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 1.5e-101 374.0 305 65.6
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 1.5e-101 374.0 290 67.6
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 1.5e-101 374.0 265 72.5
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.5e-101 374.0 261 72.8
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 2.0e-101 373.6 316 63.9
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 3.5e-101 372.9 305 65.2
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 3.5e-101 372.9 302 65.2
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 4.5e-101 372.5 328 62.8
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 5.9e-101 372.1 293 67.6
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 1.7e-100 370.5 258 74.0
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 1.7e-100 370.5 372 57.0
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 2.9e-100 369.8 303 64.4
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 3.8e-100 369.4 336 61.0
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 3.8e-100 369.4 264 73.9
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 5.0e-100 369.0 336 59.8
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 6.5e-100 368.6 302 63.9
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 6.5e-100 368.6 258 73.6
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 8.5e-100 368.2 280 67.9
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 8.5e-100 368.2 348 60.1
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 1.5e-99 367.5 299 65.6
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 1.9e-99 367.1 283 67.5
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 2.5e-99 366.7 352 58.5
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 2.5e-99 366.7 325 60.9
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 3.2e-99 366.3 322 62.1
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 3.2e-99 366.3 314 63.7
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 3.2e-99 366.3 255 72.2
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 3.2e-99 366.3 258 72.9
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 4.2e-99 365.9 295 65.8
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 4.2e-99 365.9 295 65.8
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 5.5e-99 365.5 302 63.9
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 7.2e-99 365.2 302 63.9
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 7.2e-99 365.2 296 64.9
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 1.6e-98 364.0 302 63.6
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 1.6e-98 364.0 302 63.6
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 2.1e-98 363.6 303 63.4
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 2.1e-98 363.6 314 62.7
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 3.6e-98 362.8 352 58.2
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 3.6e-98 362.8 302 63.2
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 3.6e-98 362.8 260 72.3
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 3.6e-98 362.8 305 63.6
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 8.0e-98 361.7 299 63.2
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 8.0e-98 361.7 260 71.9
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 3.0e-97 359.8 299 63.5
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 6.7e-97 358.6 307 61.6
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 6.7e-97 358.6 299 63.2
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 1.7e-92 344.0 254 70.5
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 2.2e-92 343.6 290 63.8
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 2.2e-92 343.6 290 63.8
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 5.0e-92 342.4 272 68.0
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 2.5e-91 340.1 252 69.4
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 3.2e-91 339.7 310 61.0
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 5.5e-91 339.0 271 64.9
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.6e-90 337.4 236 75.0
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 1.8e-89 334.0 268 66.8
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 1.8e-89 334.0 311 59.8
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 2.3e-89 333.6 298 60.4
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 3.0e-89 333.2 312 59.6
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 5.2e-89 332.4 303 61.1
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 8.8e-89 331.6 284 63.7
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 2.6e-88 330.1 334 57.8
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 5.7e-88 328.9 303 60.4
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 1.7e-87 327.4 252 67.9
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 1.7e-87 327.4 286 61.9
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 3.7e-87 326.2 261 66.7
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 1.1e-86 324.7 298 58.7
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 1.1e-86 324.7 317 56.8
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 3.1e-86 323.2 261 65.5
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 7.0e-86 322.0 264 63.3
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 7.0e-86 322.0 284 61.3
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 1.6e-85 320.9 285 60.7
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 2.7e-85 320.1 342 53.5
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 3.5e-85 319.7 260 64.2
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.7e-84 317.4 307 58.0
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.9e-84 316.6 307 57.7
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.8e-84 316.2 307 57.7
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 5.0e-84 315.8 307 57.7
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 6.5e-84 315.5 280 60.4
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 9.4e-83 311.6 285 60.0
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 2.2e-79 300.4 237 67.5
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 4.5e-77 292.7 252 59.9
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 1.5e-75 287.7 262 61.8
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 6.1e-74 282.3 352 48.6
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.0e-73 281.6 307 54.4
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 3.0e-73 280.0 255 60.4
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 1.7e-68 264.2 191 75.4
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 4.0e-65 253.1 193 71.5
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 6.0e-61 239.2 159 76.1
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 4.3e-51 206.5 200 54.0
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 2.3e-49 200.7 198 55.1
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 2.7e-45 187.2 117 78.6
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 8.1e-34 149.1 102 76.5
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 4.2e-30 136.7 99 72.7
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 4.2e-30 136.7 99 72.7
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 1.0e-20 105.5 77 62.3
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 2.8e-18 97.4 192 33.9
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-17 95.5 59 81.4
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 1.5e-16 91.7 60 80.0


User provided reference genes

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