Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.9e-187 659.1 351 100.0
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 2.2e-74 283.5 279 51.6
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 3.8e-74 282.7 283 52.7
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.4e-73 280.8 300 51.0
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 4.2e-73 279.3 283 52.7
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 2.7e-72 276.6 290 51.7
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.3e-71 274.2 336 47.3
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 2.3e-71 273.5 324 47.8
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 3.0e-71 273.1 330 47.3
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 6.7e-71 271.9 279 51.6
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.9e-70 270.4 257 52.5
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 2.5e-70 270.0 260 53.5
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 3.3e-70 269.6 255 52.9
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 3.3e-70 269.6 251 53.4
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 3.3e-70 269.6 321 47.0
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 4.3e-70 269.2 256 53.9
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 5.7e-70 268.9 330 47.3
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 9.7e-70 268.1 255 54.9
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 9.7e-70 268.1 251 51.8
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 1.3e-69 267.7 265 50.9
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 1.3e-69 267.7 335 47.5
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.6e-69 267.3 267 51.7
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.2e-69 266.9 246 52.8
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.2e-69 266.9 252 52.0
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 2.2e-69 266.9 282 48.9
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 2.8e-69 266.5 283 50.5
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 2.8e-69 266.5 326 46.9
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 3.7e-69 266.2 301 48.5
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.1e-68 264.6 258 51.2
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.4e-68 264.2 258 51.6
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.4e-68 264.2 285 50.2
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.8e-68 263.8 244 54.1
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 2.4e-68 263.5 351 44.4
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 2.4e-68 263.5 258 51.2
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 2.4e-68 263.5 253 49.8
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 3.1e-68 263.1 318 48.4
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 3.1e-68 263.1 275 50.5
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 5.3e-68 262.3 331 46.5
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 5.3e-68 262.3 279 50.9
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 6.9e-68 261.9 257 50.6
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 6.9e-68 261.9 320 45.9
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 9.0e-68 261.5 317 47.0
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 9.0e-68 261.5 335 45.7
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 9.0e-68 261.5 259 51.4
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 9.0e-68 261.5 279 47.3
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 1.2e-67 261.2 249 52.2
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.5e-67 260.8 301 45.5
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 2.0e-67 260.4 280 48.6
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 2.0e-67 260.4 255 52.2
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 2.6e-67 260.0 265 52.1
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 3.4e-67 259.6 273 50.5
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 3.4e-67 259.6 254 51.6
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 4.5e-67 259.2 329 45.3
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 7.7e-67 258.5 264 51.9
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.0e-66 258.1 276 48.2
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 2.9e-66 256.5 309 46.0
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 2.9e-66 256.5 257 51.0
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 3.8e-66 256.1 344 44.2
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 3.8e-66 256.1 307 45.6
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 5.0e-66 255.8 328 45.4
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 6.5e-66 255.4 222 60.4
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 6.5e-66 255.4 277 51.6
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 6.5e-66 255.4 262 48.9
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 8.5e-66 255.0 249 51.4
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 8.5e-66 255.0 265 49.1
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 1.9e-65 253.8 256 48.8
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.5e-65 253.4 321 45.8
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.5e-65 253.4 321 45.8
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 2.5e-65 253.4 265 48.7
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.2e-65 253.1 260 49.6
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.2e-65 253.1 260 49.6
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 3.2e-65 253.1 261 49.8
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 3.2e-65 253.1 248 50.4
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 4.2e-65 252.7 248 50.4
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 4.2e-65 252.7 247 51.8
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 4.2e-65 252.7 268 49.3
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 9.4e-65 251.5 251 50.2
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 9.4e-65 251.5 292 47.3
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.2e-64 251.1 258 50.0
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.2e-64 251.1 247 51.4
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.6e-64 250.8 307 45.3
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.6e-64 250.8 263 49.4
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 1.6e-64 250.8 272 48.2
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 2.7e-64 250.0 352 43.5
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 3.6e-64 249.6 241 50.6
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 6.1e-64 248.8 311 46.0
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 6.1e-64 248.8 275 48.7
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 2.3e-63 246.9 335 44.8
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 3.9e-63 246.1 263 49.0
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 6.7e-63 245.4 250 50.8
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 8.8e-63 245.0 252 50.0
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 1.5e-62 244.2 312 45.5
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 3.3e-62 243.0 246 52.4
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 5.7e-62 242.3 258 50.4
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.7e-61 240.7 261 51.0
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.2e-61 240.4 246 51.6
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.2e-61 240.4 332 41.9
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.4e-60 237.7 246 50.4
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.2e-59 234.6 301 44.9
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.3e-58 231.1 299 44.5
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 2.2e-58 230.3 339 41.0
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 4.2e-57 226.1 327 39.8
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 4.7e-56 222.6 203 52.2
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 7.4e-54 215.3 201 52.7
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 3.2e-49 199.9 284 40.8
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 5.7e-46 189.1 254 43.3
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.6e-43 181.0 269 36.8
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.9e-42 176.8 141 66.7
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 2.7e-40 170.2 166 47.6
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.0e-36 155.6 206 39.8
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 4.2e-33 146.4 141 46.8
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.8e-31 139.0 225 36.4
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 4.4e-30 136.3 175 39.4
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 7.0e-28 129.0 323 34.4
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.7e-27 127.1 126 55.6
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 5.9e-27 125.9 103 58.3
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 1.3e-26 124.8 163 41.1
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 3.6e-24 116.7 253 31.6
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 4.0e-23 113.2 192 40.6
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 5.2e-23 112.8 153 42.5
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 6.8e-23 112.5 255 36.1
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 6.8e-23 112.5 100 57.0
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 2.0e-22 110.9 97 55.7
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.4e-22 110.2 185 37.3
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 7.5e-22 109.0 184 38.6
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.3e-21 108.2 167 37.7
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.7e-21 107.8 98 51.0
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.4e-20 104.8 90 62.2
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-19 101.7 111 43.2
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.6e-18 95.5 76 64.5
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.9e-17 94.4 111 44.1
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 8.9e-15 85.5 72 54.2
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.3e-13 81.6 95 45.3
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 8.3e-13 79.0 77 44.2
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 9.2e-12 75.5 161 34.2
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 2.0e-11 74.3 54 61.1
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 7.8e-11 72.4 57 61.4
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 1.1e-09 68.6 52 65.4
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 2.8e-08 63.9 90 41.1
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 6.8e-07 59.3 47 53.2
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.6e-06 57.4 82 37.8


User provided reference genes

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