Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 3.8e-268 927.5 459 100.0
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 2.3e-103 380.2 388 48.7
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 2.3e-103 380.2 382 50.0
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 6.6e-103 378.6 384 49.0
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 1.1e-102 377.9 404 48.0
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 2.5e-102 376.7 392 49.7
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 4.3e-102 375.9 389 48.1
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 4.3e-102 375.9 406 46.8
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 4.3e-102 375.9 388 48.5
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 5.6e-102 375.6 387 46.5
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 7.3e-102 375.2 406 47.0
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 9.6e-102 374.8 371 51.8
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.3e-101 374.4 393 49.6
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 1.6e-101 374.0 360 52.2
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 1.6e-101 374.0 384 48.4
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 1.6e-101 374.0 342 53.8
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 2.1e-101 373.6 387 46.5
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 2.1e-101 373.6 359 51.3
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 2.8e-101 373.2 388 48.5
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 2.8e-101 373.2 383 49.1
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 2.8e-101 373.2 383 49.1
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 2.8e-101 373.2 360 51.4
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 6.2e-101 372.1 374 50.3
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 6.2e-101 372.1 390 47.7
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 6.2e-101 372.1 384 48.2
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.1e-100 371.3 392 47.4
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.1e-100 371.3 386 47.7
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 1.1e-100 371.3 386 47.9
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 1.4e-100 370.9 389 47.0
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 1.8e-100 370.5 382 47.4
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 1.8e-100 370.5 445 44.0
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 1.8e-100 370.5 388 48.2
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 2.4e-100 370.2 383 48.6
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 2.4e-100 370.2 388 47.9
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 2.4e-100 370.2 388 47.9
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 2.4e-100 370.2 352 51.1
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 2.4e-100 370.2 388 47.7
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.1e-100 369.8 360 50.0
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 3.1e-100 369.8 362 51.1
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 4.0e-100 369.4 388 47.9
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.0e-100 369.4 390 47.7
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 4.0e-100 369.4 388 49.0
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 5.3e-100 369.0 382 49.5
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 5.3e-100 369.0 403 47.9
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 5.3e-100 369.0 382 49.0
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 5.3e-100 369.0 389 47.6
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 5.3e-100 369.0 388 48.7
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 6.9e-100 368.6 393 48.9
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 6.9e-100 368.6 382 48.4
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 6.9e-100 368.6 382 49.2
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 9.0e-100 368.2 379 48.5
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 9.0e-100 368.2 390 47.7
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 1.2e-99 367.9 382 48.4
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 1.2e-99 367.9 394 47.7
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 1.2e-99 367.9 388 48.7
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.2e-99 367.9 390 46.9
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 1.2e-99 367.9 412 46.8
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.5e-99 367.5 386 49.0
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 1.5e-99 367.5 388 47.7
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 1.5e-99 367.5 360 50.6
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 1.5e-99 367.5 390 49.0
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 1.5e-99 367.5 388 50.0
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 2.0e-99 367.1 363 49.6
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 3.4e-99 366.3 361 48.2
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 3.4e-99 366.3 382 48.4
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 4.5e-99 365.9 388 47.2
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 5.8e-99 365.5 388 47.9
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 5.8e-99 365.5 388 47.7
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 5.8e-99 365.5 359 51.0
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 7.6e-99 365.2 379 49.6
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 7.6e-99 365.2 379 49.6
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 7.6e-99 365.2 388 47.4
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 9.9e-99 364.8 383 47.0
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 1.3e-98 364.4 410 47.6
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 1.3e-98 364.4 390 47.4
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 1.7e-98 364.0 362 50.0
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 1.7e-98 364.0 361 49.3
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 1.7e-98 364.0 390 48.2
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 2.9e-98 363.2 388 48.5
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.9e-98 363.2 369 49.3
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 4.9e-98 362.5 388 49.0
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.9e-98 362.5 413 45.0
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 4.9e-98 362.5 443 43.8
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 6.4e-98 362.1 386 47.4
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 8.4e-98 361.7 389 46.5
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 8.4e-98 361.7 386 48.2
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 8.4e-98 361.7 388 45.9
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 1.1e-97 361.3 388 47.4
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.4e-97 360.9 388 46.6
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 1.4e-97 360.9 369 49.6
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 1.4e-97 360.9 387 47.8
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.4e-97 360.9 388 47.4
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 1.9e-97 360.5 388 47.2
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 1.9e-97 360.5 389 46.8
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 3.2e-97 359.8 359 52.6
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 3.2e-97 359.8 388 47.4
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 3.2e-97 359.8 388 47.7
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 4.2e-97 359.4 388 46.9
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 4.2e-97 359.4 388 46.9
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 4.2e-97 359.4 388 47.2
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 5.4e-97 359.0 382 46.6
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 5.4e-97 359.0 382 46.6
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 5.4e-97 359.0 388 46.9
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 5.4e-97 359.0 388 47.2
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 7.1e-97 358.6 388 47.7
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 7.1e-97 358.6 456 43.6
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 9.3e-97 358.2 388 46.6
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 1.2e-96 357.8 427 44.5
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 1.2e-96 357.8 388 45.4
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 2.1e-96 357.1 413 44.6
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 6.0e-96 355.5 409 44.5
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 7.9e-96 355.1 408 45.6
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 1.0e-95 354.8 388 44.6
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.8e-95 354.0 414 45.7
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 2.5e-94 350.1 388 45.1
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 5.6e-94 349.0 392 46.9
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 3.7e-93 346.3 444 44.8
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 3.7e-93 346.3 358 48.9
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 2.4e-92 343.6 435 42.1
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 2.4e-92 343.6 386 45.3
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 4.0e-92 342.8 410 43.2
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 5.3e-92 342.4 383 47.5
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 1.5e-91 340.9 369 47.4
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 3.4e-91 339.7 388 45.6
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 1.7e-90 337.4 438 42.7
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 1.4e-89 334.3 366 45.4
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 3.2e-89 333.2 391 45.0
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 4.2e-89 332.8 388 46.4
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 1.2e-88 331.3 448 40.8
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.9e-86 323.9 387 43.2
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 1.7e-74 284.3 267 55.1
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 5.1e-71 272.7 331 45.9
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 2.5e-70 270.4 225 56.0
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 1.1e-57 228.4 198 53.5
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 4.2e-57 226.5 255 44.3
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 5.7e-54 216.1 294 42.5
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.3e-50 204.9 388 34.0
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 6.7e-47 192.6 173 50.3
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 3.4e-38 163.7 240 39.6
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 1.7e-34 151.4 327 31.8
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.2e-30 138.7 124 48.4
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 2.6e-30 137.5 131 44.3
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 3.3e-25 120.6 283 34.6
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.8e-23 114.8 142 38.7
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 6.0e-19 99.8 59 72.9
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 7.8e-19 99.4 61 73.8
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 2.3e-18 97.8 159 37.1
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.6e-16 91.7 81 53.1
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 8.9e-15 85.9 158 38.0
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 9.8e-14 82.4 158 32.3
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.7e-13 81.6 67 52.2
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.6e-11 75.1 91 37.4
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 2.7e-11 74.3 68 51.5
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 7.8e-11 72.8 60 55.0
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 4.7e-08 63.5 55 52.7
Os07g0685500 Oryza sativa ssp. japonica HOM05D001832 ORTHO05D001861 3.4e-06 57.4 218 25.7
Gohir.D09G071700 Gossypium hirsutum HOM05D000363 ORTHO05D000236 4.4e-06 57.0 302 25.2
GSVIVG01018184001 Vitis vinifera HOM05D000363 ORTHO05D000236 4.4e-06 57.0 86 36.0
Gorai.006G086700 Gossypium raimondii HOM05D000363 ORTHO05D000236 7.5e-06 56.2 302 25.2
Nn1g05792 Nelumbo nucifera HOM05D000363 ORTHO05D000236 7.5e-06 56.2 86 32.6


User provided reference genes

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