Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.2e-100 369.8 186 100.0
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 3.6e-55 218.8 177 65.5
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.2e-50 203.8 181 58.0
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.5e-50 203.4 179 58.7
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.6e-50 202.6 182 59.3
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.5e-50 202.2 182 59.9
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 5.9e-50 201.4 179 59.2
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 1.3e-49 200.3 140 69.3
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 2.2e-49 199.5 180 58.9
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 2.9e-49 199.1 179 58.1
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 2.9e-49 199.1 179 57.0
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 5.0e-49 198.4 179 57.5
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 5.0e-49 198.4 179 57.0
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.5e-49 198.0 179 58.1
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.4e-48 196.8 179 58.7
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.4e-48 196.8 182 58.2
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.9e-48 196.4 178 56.7
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.9e-48 196.4 178 56.7
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.5e-48 196.1 180 57.8
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 3.2e-48 195.7 182 58.2
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 3.2e-48 195.7 178 54.5
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.2e-48 194.5 179 57.0
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 7.2e-48 194.5 179 58.1
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 7.2e-48 194.5 179 58.1
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 9.4e-48 194.1 176 59.7
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 9.4e-48 194.1 179 56.4
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 9.4e-48 194.1 179 55.9
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 9.4e-48 194.1 156 63.5
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 1.2e-47 193.7 181 55.8
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.2e-47 193.7 179 57.5
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 1.6e-47 193.4 179 57.0
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.6e-47 193.4 180 56.1
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.1e-47 193.0 156 62.8
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.1e-47 193.0 138 67.4
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 2.7e-47 192.6 179 56.4
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.7e-47 192.6 126 72.2
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 3.6e-47 192.2 184 58.7
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 3.6e-47 192.2 156 62.8
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 3.6e-47 192.2 179 57.5
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 3.6e-47 192.2 179 58.7
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 3.6e-47 192.2 179 59.2
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 4.7e-47 191.8 179 55.9
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 6.1e-47 191.4 173 57.8
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 6.1e-47 191.4 173 57.8
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 6.1e-47 191.4 179 55.9
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 8.0e-47 191.0 181 57.5
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.0e-46 190.7 156 61.5
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.0e-46 190.7 179 55.9
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.8e-46 189.9 179 55.9
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.8e-46 189.9 182 56.6
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.8e-46 189.9 182 56.6
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.8e-46 189.9 182 56.6
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.8e-46 189.9 179 55.9
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.8e-46 189.9 173 57.8
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.8e-46 189.9 178 55.1
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.3e-46 189.5 181 55.2
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.0e-46 189.1 180 56.1
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 3.0e-46 189.1 179 54.7
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 3.0e-46 189.1 179 55.3
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 3.9e-46 188.7 182 56.0
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 3.9e-46 188.7 182 56.0
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.9e-46 188.7 173 57.2
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 3.9e-46 188.7 179 55.3
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 3.9e-46 188.7 179 55.3
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 3.9e-46 188.7 126 70.6
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.9e-46 188.7 181 56.9
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 3.9e-46 188.7 179 55.9
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 3.9e-46 188.7 185 52.4
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 6.7e-46 188.0 178 53.4
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 8.8e-46 187.6 178 55.6
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.1e-45 187.2 157 57.3
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.5e-45 186.8 127 70.1
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.5e-45 186.8 127 70.1
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 2.0e-45 186.4 126 69.0
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.6e-45 186.0 127 70.1
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.6e-45 186.0 127 70.1
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 2.6e-45 186.0 180 54.4
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 2.6e-45 186.0 145 62.8
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 2.6e-45 186.0 184 56.0
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.6e-45 186.0 127 70.1
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.6e-45 186.0 179 54.7
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.6e-45 186.0 179 55.3
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.6e-45 186.0 182 54.4
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.3e-45 185.7 179 55.9
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 4.4e-45 185.3 181 54.1
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 5.7e-45 184.9 179 55.3
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 5.7e-45 184.9 173 56.6
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 5.7e-45 184.9 182 55.5
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 7.4e-45 184.5 129 66.7
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 7.4e-45 184.5 188 55.3
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 9.7e-45 184.1 162 59.3
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 9.7e-45 184.1 157 60.5
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.3e-44 183.7 156 59.6
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.7e-44 183.3 180 54.4
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.7e-44 183.3 181 55.8
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 2.2e-44 183.0 184 54.3
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.2e-44 183.0 180 54.4
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 2.2e-44 183.0 182 54.9
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 2.2e-44 183.0 182 54.9
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 2.8e-44 182.6 175 54.9
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.8e-44 181.8 122 69.7
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.8e-44 181.8 122 69.7
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 6.3e-44 181.4 179 52.5
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 6.3e-44 181.4 175 54.3
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 8.2e-44 181.0 150 58.0
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.1e-43 180.6 179 53.6
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.1e-43 180.6 179 53.6
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.1e-43 180.6 177 55.9
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.4e-43 180.3 178 53.9
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.4e-43 180.3 158 59.5
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.4e-43 180.3 179 53.6
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.8e-43 179.9 180 55.0
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.8e-43 179.9 173 54.9
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.8e-43 179.9 139 61.9
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 2.4e-43 179.5 127 69.3
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 2.4e-43 179.5 123 69.9
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.4e-43 179.5 181 53.0
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 5.3e-43 178.3 178 53.4
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 5.3e-43 178.3 158 59.5
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 9.1e-43 177.6 158 58.9
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 1.2e-42 177.2 169 54.4
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 3.5e-42 175.6 182 50.0
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.7e-41 173.3 145 60.0
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 2.2e-41 172.9 169 53.8
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 3.8e-41 172.2 181 51.9
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 3.8e-41 172.2 135 62.2
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.9e-40 169.9 127 65.4
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 7.2e-40 167.9 152 57.2
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 9.4e-40 167.5 125 66.4
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.6e-39 166.8 162 54.3
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 4.7e-39 165.2 162 53.7
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 8.0e-39 164.5 179 49.7
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.0e-38 164.1 197 47.7
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 4.0e-38 162.2 173 51.4
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 8.8e-38 161.0 192 49.0
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.5e-37 160.2 120 63.3
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 2.8e-36 156.0 195 47.2
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.1e-35 154.1 193 47.7
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.7e-33 146.7 225 40.4
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-27 127.5 85 68.2
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.8e-27 126.7 82 70.7
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.0e-26 123.2 82 69.5
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.0e-25 120.9 179 39.7
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 5.0e-25 118.6 135 47.4
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 7.2e-24 114.8 78 67.9
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 4.7e-23 112.1 121 46.3
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.0e-22 109.4 169 38.5
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.5e-21 107.1 124 48.4
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.6e-21 106.3 104 52.9
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 7.5e-21 104.8 108 51.9
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.8e-19 100.1 124 46.8
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 2.0e-18 96.7 122 45.1
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 1.5e-16 90.5 103 42.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.4e-14 84.0 116 37.9
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 6.8e-14 81.6 86 52.3
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 6.8e-14 81.6 86 52.3
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.2e-10 70.9 108 34.3
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 3.9e-09 65.9 60 51.7
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.1e-08 64.3 79 46.8
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.5e-08 63.2 42 66.7
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 2.1e-07 60.1 65 47.7


User provided reference genes

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