Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 1.3e-246 855.9 420 100.0
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.6e-132 476.9 410 56.1
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 5.8e-130 468.4 407 56.0
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.7e-129 466.8 407 55.8
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.5e-117 427.2 407 49.4
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.0e-114 416.8 402 49.8
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 3.4e-114 416.0 391 52.2
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 9.3e-112 407.9 406 48.3
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 3.0e-110 402.9 399 48.9
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 5.1e-110 402.1 405 48.4
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 6.7e-110 401.7 403 49.1
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 6.7e-110 401.7 399 50.4
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 8.8e-110 401.4 404 49.3
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 8.8e-110 401.4 402 49.0
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 2.5e-109 399.8 404 48.8
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.3e-109 399.4 404 49.8
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.3e-108 397.5 405 49.1
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 4.8e-108 395.6 405 49.4
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 8.2e-108 394.8 398 47.2
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.1e-107 394.4 410 48.8
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.1e-107 394.4 400 47.5
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.4e-107 394.0 400 49.2
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 2.4e-107 393.3 403 50.1
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 3.1e-107 392.9 406 47.8
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 3.1e-107 392.9 403 50.6
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 4.1e-107 392.5 418 46.9
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.5e-106 390.6 410 48.5
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 3.4e-106 389.4 403 47.4
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.5e-106 389.0 402 49.5
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 5.9e-106 388.7 409 48.4
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 5.9e-106 388.7 404 47.8
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 5.9e-106 388.7 404 47.8
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 7.7e-106 388.3 402 49.5
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.0e-105 387.9 406 47.8
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 2.2e-105 386.7 409 48.4
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.2e-105 386.7 404 48.3
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.2e-105 386.7 402 47.0
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 2.9e-105 386.3 409 47.7
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.8e-105 386.0 408 47.5
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.8e-105 386.0 411 46.7
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 3.8e-105 386.0 405 47.7
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 3.8e-105 386.0 399 48.6
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 5.0e-105 385.6 405 47.2
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 6.5e-105 385.2 403 47.1
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 8.5e-105 384.8 400 49.5
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.1e-104 384.4 412 47.1
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.4e-104 384.0 407 47.7
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 1.9e-104 383.6 401 49.1
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.5e-104 383.3 405 46.4
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 2.5e-104 383.3 405 47.9
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 3.2e-104 382.9 408 47.3
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 4.2e-104 382.5 406 49.3
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 4.2e-104 382.5 397 46.6
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 7.2e-104 381.7 400 48.5
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 7.2e-104 381.7 400 48.5
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 7.2e-104 381.7 400 48.5
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 7.2e-104 381.7 400 48.5
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 7.2e-104 381.7 400 48.5
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 7.2e-104 381.7 408 47.3
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 9.4e-104 381.3 401 48.9
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 9.4e-104 381.3 409 46.9
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.2e-103 380.9 413 46.7
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.2e-103 380.9 402 47.5
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.2e-103 380.9 406 46.8
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.6e-103 380.6 401 49.1
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 2.1e-103 380.2 405 47.2
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 2.1e-103 380.2 398 46.0
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 2.7e-103 379.8 409 47.7
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.6e-103 379.4 399 49.1
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 3.6e-103 379.4 403 47.4
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 4.7e-103 379.0 398 48.2
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 1.4e-102 377.5 403 47.9
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.4e-102 377.5 405 46.9
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.4e-102 377.5 392 47.4
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.4e-102 377.5 408 45.8
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 1.4e-102 377.5 397 46.9
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 2.3e-102 376.7 396 47.5
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 6.7e-102 375.2 403 46.7
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 8.8e-102 374.8 399 46.6
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.1e-101 374.4 399 48.1
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.5e-101 374.0 409 47.2
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 2.6e-101 373.2 389 46.3
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 3.3e-101 372.9 400 45.2
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 4.4e-101 372.5 408 46.1
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 7.4e-101 371.7 400 46.2
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 9.7e-101 371.3 400 45.8
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 9.7e-101 371.3 398 46.2
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.3e-100 370.9 396 46.0
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.2e-100 370.2 406 45.3
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.2e-100 370.2 396 46.0
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 3.7e-100 369.4 418 45.7
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 3.7e-100 369.4 415 46.7
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.4e-99 367.5 393 46.8
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.4e-99 366.7 415 45.5
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.4e-99 366.7 396 46.2
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.4e-99 366.7 409 46.5
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 4.1e-99 365.9 405 46.9
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 6.9e-99 365.2 391 44.8
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 6.9e-99 365.2 401 47.6
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.2e-98 364.4 390 48.2
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 4.5e-98 362.5 399 45.4
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.0e-97 361.3 425 45.4
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 3.8e-97 359.4 417 44.6
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.1e-96 357.8 387 44.4
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.9e-96 357.1 390 44.4
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.9e-96 357.1 398 45.0
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.2e-95 354.4 404 45.0
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 4.7e-95 352.4 405 43.0
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 6.1e-95 352.1 387 44.4
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.4e-94 350.9 403 42.4
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.8e-94 350.5 391 43.2
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 2.3e-94 350.1 403 42.4
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 2.3e-94 350.1 401 46.1
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 1.5e-93 347.4 399 45.6
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.0e-93 347.1 391 44.2
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.0e-93 347.1 391 44.2
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 5.7e-93 345.5 389 45.2
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 9.7e-93 344.7 405 43.5
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 9.7e-93 344.7 388 42.0
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.3e-92 344.4 392 42.6
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 1.3e-92 344.4 388 43.3
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.7e-92 344.0 385 43.6
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 2.6e-90 336.7 397 44.6
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.6e-87 327.4 373 45.6
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 4.7e-87 325.9 393 42.5
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.2e-85 321.2 378 42.6
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.2e-85 321.2 378 42.6
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.3e-84 317.8 414 41.8
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.1e-83 313.2 399 41.9
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 5.3e-83 312.4 393 43.0
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 3.5e-82 309.7 401 42.4
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 7.7e-82 308.5 408 42.4
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 8.8e-78 295.0 390 39.7
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 3.6e-71 273.1 437 37.1
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 4.7e-55 219.5 391 34.5
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 2.6e-53 213.8 240 43.8
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 5.8e-53 212.6 402 33.3
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.2e-50 204.9 406 34.2
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 2.1e-50 204.1 396 33.6
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.5e-48 197.2 398 31.9
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.2e-47 194.9 402 31.1
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.9e-44 183.0 311 35.0
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 5.4e-43 179.5 185 45.9
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.9e-40 171.0 372 31.7
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 7.1e-35 152.5 145 53.1
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 7.8e-34 149.1 163 42.3
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 9.9e-29 132.1 410 27.6
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 9.9e-29 132.1 162 43.2
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 7.1e-27 125.9 130 50.0
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 3.0e-25 120.6 109 50.5
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 2.4e-19 100.9 77 55.8
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 1.8e-09 68.2 395 23.5
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 6.7e-09 66.2 403 25.8
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 1.1e-08 65.5 405 23.2
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 1.9e-08 64.7 402 21.4
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 9.6e-08 62.4 411 21.7
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 1.6e-07 61.6 408 23.0
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 2.1e-07 61.2 405 22.7
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.7e-07 60.5 321 21.5
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 6.2e-07 59.7 407 22.1
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 8.2e-07 59.3 394 22.3
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 8.2e-07 59.3 404 21.5
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 1.1e-06 58.9 396 22.2
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 1.1e-06 58.9 397 21.2
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.8e-06 58.2 400 23.0
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 2.4e-06 57.8 415 20.7
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 3.1e-06 57.4 47 44.7


User provided reference genes

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