Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 5.8e-144 514.2 264 100.0
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 3.6e-69 265.8 211 65.4
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 6.8e-68 261.5 227 63.0
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 2.6e-67 259.6 193 66.8
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 3.4e-67 259.2 182 70.3
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.4e-67 258.8 212 63.2
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 5.8e-67 258.5 219 63.0
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 7.5e-67 258.1 212 63.7
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 7.5e-67 258.1 186 68.3
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 9.8e-67 257.7 223 62.3
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.2e-66 256.5 212 60.8
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 2.2e-66 256.5 186 67.7
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 2.9e-66 256.1 182 68.1
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 2.9e-66 256.1 182 68.1
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 2.9e-66 256.1 212 62.3
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 4.9e-66 255.4 212 60.4
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 4.9e-66 255.4 212 60.4
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 4.9e-66 255.4 181 69.6
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 4.9e-66 255.4 186 66.7
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 6.4e-66 255.0 183 68.3
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 6.4e-66 255.0 212 61.3
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 6.4e-66 255.0 186 67.7
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 6.4e-66 255.0 195 65.6
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 8.3e-66 254.6 182 69.8
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 8.3e-66 254.6 214 61.2
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.1e-65 254.2 216 61.1
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 1.1e-65 254.2 185 67.0
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 1.1e-65 254.2 185 68.1
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.4e-65 253.8 190 66.3
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 1.9e-65 253.4 219 61.2
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 2.4e-65 253.1 216 61.6
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 2.4e-65 253.1 218 61.0
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 2.4e-65 253.1 183 66.1
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 2.4e-65 253.1 182 70.9
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 3.2e-65 252.7 221 62.4
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 4.1e-65 252.3 199 63.3
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 5.4e-65 251.9 186 68.3
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 7.0e-65 251.5 209 61.7
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 7.0e-65 251.5 214 62.6
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 9.2e-65 251.1 214 62.1
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.2e-64 250.8 216 61.6
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 2.0e-64 250.0 189 66.1
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 2.0e-64 250.0 194 66.0
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 2.7e-64 249.6 186 66.7
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 2.7e-64 249.6 209 60.3
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 2.7e-64 249.6 181 69.1
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 3.5e-64 249.2 204 63.7
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 3.5e-64 249.2 188 67.0
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 3.5e-64 249.2 214 61.7
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 4.6e-64 248.8 205 64.4
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 4.6e-64 248.8 207 62.3
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 1.0e-63 247.7 235 56.6
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 1.3e-63 247.3 185 65.9
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 1.3e-63 247.3 188 66.0
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 1.3e-63 247.3 188 66.5
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.3e-63 247.3 214 62.1
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 1.3e-63 247.3 195 63.6
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.3e-63 247.3 197 63.5
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 2.3e-63 246.5 188 66.0
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 3.0e-63 246.1 209 61.2
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 3.9e-63 245.7 218 60.1
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 5.0e-63 245.4 180 68.3
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 6.6e-63 245.0 226 58.8
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 6.6e-63 245.0 199 61.3
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 8.6e-63 244.6 199 63.8
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 8.6e-63 244.6 180 67.8
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.1e-62 244.2 215 60.0
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 1.1e-62 244.2 188 65.4
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 1.1e-62 244.2 188 65.4
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.1e-62 244.2 182 65.4
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 1.9e-62 243.4 206 60.2
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 3.3e-62 242.7 185 67.0
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 4.3e-62 242.3 210 60.5
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 4.3e-62 242.3 208 60.1
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 4.3e-62 242.3 209 59.8
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.6e-62 241.9 209 61.2
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 5.6e-62 241.9 186 65.6
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 9.5e-62 241.1 186 65.1
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 9.5e-62 241.1 232 56.9
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 2.1e-61 240.0 188 64.4
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.1e-61 240.0 188 65.4
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 3.1e-60 236.1 186 63.4
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 3.1e-60 236.1 200 60.5
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 1.5e-59 233.8 200 61.0
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 3.4e-59 232.6 184 64.7
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.3e-58 230.7 201 60.2
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 2.2e-58 229.9 217 58.5
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 2.9e-58 229.6 214 57.5
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 2.4e-57 226.5 180 63.3
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 3.2e-57 226.1 212 59.0
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.2e-57 226.1 197 58.9
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 4.1e-57 225.7 193 61.1
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 4.1e-57 225.7 188 61.2
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 4.1e-57 225.7 180 61.7
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 9.2e-57 224.6 200 59.5
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 2.1e-56 223.4 176 64.2
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 5.1e-55 218.8 188 57.4
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 6.6e-55 218.4 162 65.4
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 2.5e-54 216.5 152 67.8
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 2.0e-51 206.8 182 60.4
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.6e-48 197.2 133 70.7
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 7.8e-48 194.9 133 69.2
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 5.1e-47 192.2 205 54.1
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.1e-46 191.0 151 61.6
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 1.6e-45 187.2 199 52.8
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 4.4e-43 179.1 151 60.3
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 5.8e-43 178.7 190 51.6
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 6.4e-42 175.3 192 49.0
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 6.4e-42 175.3 197 50.3
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 4.8e-37 159.1 120 63.3
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 3.2e-33 146.4 111 64.0
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 6.0e-32 142.1 131 55.0
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 1.6e-29 134.0 182 44.5
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 3.9e-23 112.8 195 36.9
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.3e-21 107.8 107 53.3
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 6.0e-16 89.0 171 36.3
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.8e-15 87.4 69 66.7
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 1.6e-13 80.9 96 51.0
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 9.0e-12 75.1 60 66.7
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 1.3e-07 61.2 124 33.1
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.3e-07 61.2 139 30.9
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 2.3e-07 60.5 143 32.9
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 3.0e-07 60.1 114 33.3
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 5.1e-07 59.3 124 30.6
Cre10.g430450 Chlamydomonas reinhardtii HOM05D003894 ORTHO05D004584 8.7e-07 58.5 86 38.4
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 8.7e-07 58.5 97 35.1
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 1.1e-06 58.2 124 31.5
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 1.1e-06 58.2 124 31.5
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 1.1e-06 58.2 118 30.5
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 1.5e-06 57.8 121 31.4
Thhalv10000960m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 1.5e-06 57.8 124 30.6
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 1.5e-06 57.8 127 33.1
PRCOL_00004292 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 1.5e-06 57.8 114 34.2
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 1.9e-06 57.4 124 30.6
BcaC06g31388 Brassica carinata HOM05D003894 ORTHO05D004584 1.9e-06 57.4 124 31.5
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 1.9e-06 57.4 124 31.5
CARHR173940 Cardamine hirsuta HOM05D003894 ORTHO05D004584 1.9e-06 57.4 124 29.8
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 1.9e-06 57.4 134 28.4
AT5G47435 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 2.5e-06 57.0 124 30.6
C07p31050 Brassica napus HOM05D003894 ORTHO05D004584 2.5e-06 57.0 124 31.5
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 2.5e-06 57.0 136 28.7
Lalb_Chr05g0214381 Lupinus albus HOM05D003894 ORTHO05D004584 2.5e-06 57.0 97 34.0
Sp2g12140 Schrenkiella parvula HOM05D003894 ORTHO05D004584 2.5e-06 57.0 124 30.6
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 2.5e-06 57.0 97 35.1
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 2.5e-06 57.0 156 28.8
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 3.3e-06 56.6 134 27.6
SalBow8G2877 Salvia bowleyana HOM05D005388 ORTHO05D006281 3.3e-06 56.6 128 34.4
Actinidia26868 Actinidia chinensis HOM05D005388 ORTHO05D006281 4.3e-06 56.2 134 26.1
AL7G37350 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 4.3e-06 56.2 114 34.2
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 4.3e-06 56.2 129 31.0
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 4.3e-06 56.2 159 31.4
Carub.0007s2405 Capsella rubella HOM05D003894 ORTHO05D004584 5.7e-06 55.8 113 34.5
Carub.0008s0035 Capsella rubella HOM05D003894 ORTHO05D004584 5.7e-06 55.8 124 29.8
ECA234G3218 Erigeron canadensis HOM05D005388 ORTHO05D006281 5.7e-06 55.8 129 31.8
FvH4_5g19130 Fragaria vesca HOM05D003894 ORTHO05D004584 5.7e-06 55.8 97 33.0
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 5.7e-06 55.8 136 28.7
Mapoly0048s0089 Marchantia polymorpha HOM05D003894 ORTHO05D004584 5.7e-06 55.8 96 35.4
AL8G10600 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 7.4e-06 55.5 124 29.8
Eucgr.D02094 Eucalyptus grandis HOM05D003894 ORTHO05D004584 7.4e-06 55.5 124 29.8
Glyma.17G142800 Glycine max HOM05D003894 ORTHO05D004584 7.4e-06 55.5 97 34.0
Lalb_Chr16g0386751 Lupinus albus HOM05D003894 ORTHO05D004584 7.4e-06 55.5 124 29.0
Nitab4.5_0000618g0110 Nicotiana tabacum HOM05D003894 ORTHO05D004584 7.4e-06 55.5 97 32.0
Peaxi162Scf00558g00317 Petunia axillaris HOM05D005388 ORTHO05D006281 7.4e-06 55.5 159 28.3
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 7.4e-06 55.5 97 34.0
AagrBONN_evm.TU.Sc2ySwM_117.1331 Anthoceros agrestis HOM05D003894 ORTHO05D004584 9.7e-06 55.1 96 35.4
FAN18G1468 Fragaria x ananassa HOM05D003894 ORTHO05D004584 9.7e-06 55.1 106 31.1
Nitab4.5_0001381g0150 Nicotiana tabacum HOM05D003894 ORTHO05D004584 9.7e-06 55.1 97 34.0
Nitab4.5_0002289g0080 Nicotiana tabacum HOM05D003894 ORTHO05D004584 9.7e-06 55.1 97 34.0
Phvul.003G221600 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 9.7e-06 55.1 97 33.0
Psat3g203360 Pisum sativum HOM05D003894 ORTHO05D004584 9.7e-06 55.1 97 33.0
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 9.7e-06 55.1 96 34.4
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 9.7e-06 55.1 96 35.4
Sabra01G0134600 Salix brachista HOM05D003894 ORTHO05D004584 9.7e-06 55.1 97 33.0
VMungo0251G1668 Vigna mungo HOM05D003894 ORTHO05D004584 9.7e-06 55.1 97 33.0


User provided reference genes

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