Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0144s0014 Marchantia polymorpha HOM05D005983 ORTHO05D007438 2.3e-257 891.7 449 100.0
Pp3c10_660 Physcomitrium patens HOM05D005983 ORTHO05D007438 3.2e-126 456.1 403 60.3
Gohir.D03G163500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 2.6e-120 436.4 405 56.0
Eucgr.E00410 Eucalyptus grandis HOM05D005983 ORTHO05D007438 1.7e-119 433.7 418 54.5
Gorai.003G172200 Gossypium raimondii HOM05D005983 ORTHO05D007438 1.7e-119 433.7 405 55.8
Prupe.5G066800 Prunus persica HOM05D005983 ORTHO05D007438 8.4e-119 431.4 404 56.7
Duzib084G0278 Durio zibethinus HOM05D005983 ORTHO05D007438 1.1e-118 431.0 417 54.7
DCAR_004965 Daucus carota HOM05D005983 ORTHO05D007438 1.4e-118 430.6 442 53.4
Gohir.A03G007500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 1.4e-118 430.6 405 55.6
CANSAT21G0098 Cannabis sativa HOM05D005983 ORTHO05D007438 3.2e-118 429.5 409 54.5
Ciclev10020120m.g Citrus clementina HOM05D005983 ORTHO05D007438 3.2e-118 429.5 410 54.1
PGR042G2168 Punica granatum HOM05D005983 ORTHO05D007438 5.5e-118 428.7 416 54.6
A01p20580 Brassica napus HOM05D005983 ORTHO05D007438 7.1e-118 428.3 404 57.4
BraA01t01986Z Brassica rapa HOM05D005983 ORTHO05D007438 7.1e-118 428.3 404 57.4
Potri.003G078300 Populus trichocarpa HOM05D005983 ORTHO05D007438 9.3e-118 427.9 409 54.8
Aa31LG2G12890 Aethionema arabicum HOM05D005983 ORTHO05D007438 2.1e-117 426.8 404 56.7
MBI04_g09520_MAGBIO Magnolia biondii HOM05D005983 ORTHO05D007438 2.1e-117 426.8 414 54.8
BcaC09g50403 Brassica carinata HOM05D005983 ORTHO05D007438 2.7e-117 426.4 404 57.2
C01p25880 Brassica napus HOM05D005983 ORTHO05D007438 2.7e-117 426.4 404 57.2
BolC1t02533H Brassica oleracea HOM05D005983 ORTHO05D007438 2.7e-117 426.4 404 57.2
MD06G1055900 Malus domestica HOM05D005983 ORTHO05D007438 2.7e-117 426.4 404 55.9
COL.COLO4_37146 Corchorus olitorius HOM05D005983 ORTHO05D007438 4.6e-117 425.6 407 54.3
Thecc.03G249100 Theobroma cacao HOM05D005983 ORTHO05D007438 7.9e-117 424.9 427 53.6
Glyma.01G207800 Glycine max HOM05D005983 ORTHO05D007438 1.0e-116 424.5 426 52.1
Cc08_g12250 Coffea canephora HOM05D005983 ORTHO05D007438 1.8e-116 423.7 402 55.2
Carub.0007s2469 Capsella rubella HOM05D005983 ORTHO05D007438 3.9e-116 422.5 405 54.8
BcaNung00159 Brassica carinata HOM05D005983 ORTHO05D007438 8.7e-116 421.4 445 52.8
Aqoxy5G03845 Aquilegia oxysepala HOM05D005983 ORTHO05D007438 1.1e-115 421.0 425 52.2
MELO3C005523.2 Cucumis melo HOM05D005983 ORTHO05D007438 1.1e-115 421.0 440 50.9
Sp7g15340 Schrenkiella parvula HOM05D005983 ORTHO05D007438 1.5e-115 420.6 404 55.2
PGSC0003DMG402011882 Solanum tuberosum HOM05D005983 ORTHO05D007438 1.9e-115 420.2 404 55.7
VMungo1215G0088 Vigna mungo HOM05D005983 ORTHO05D007438 2.5e-115 419.9 409 53.8
AT4G16700 Arabidopsis thaliana HOM05D005983 ORTHO05D007438 3.3e-115 419.5 442 51.8
Nn1g00952 Nelumbo nucifera HOM05D005983 ORTHO05D007438 3.3e-115 419.5 412 53.9
arahy.Tifrunner.gnm1.ann1.NE97L5 Arachis hypogaea HOM05D005983 ORTHO05D007438 4.3e-115 419.1 411 54.0
Migut.A01119 Erythranthe guttata HOM05D005983 ORTHO05D007438 4.3e-115 419.1 409 54.5
RcHm_v2.0_Chr7g0203641 Rosa chinensis HOM05D005983 ORTHO05D007438 4.3e-115 419.1 400 56.2
Lj2g0002324 Lotus japonicus HOM05D005983 ORTHO05D007438 7.4e-115 418.3 410 53.2
TWI15G0813 Tripterygium wilfordii HOM05D005983 ORTHO05D007438 7.4e-115 418.3 420 52.1
AL7G38030 Arabidopsis lyrata HOM05D005983 ORTHO05D007438 1.3e-114 417.5 404 53.7
Sed0010070 Sechium edule HOM05D005983 ORTHO05D007438 1.6e-114 417.2 417 52.8
CSS0015193 Camellia sinensis var. sinensis HOM05D005983 ORTHO05D007438 2.2e-114 416.8 420 52.6
SalBow6G6019 Salvia bowleyana HOM05D005983 ORTHO05D007438 2.2e-114 416.8 426 52.6
Sabra03G0048600 Salix brachista HOM05D005983 ORTHO05D007438 2.8e-114 416.4 416 53.6
CiPaw.11G080800 Carya illinoinensis HOM05D005983 ORTHO05D007438 6.3e-114 415.2 405 53.8
Lalb_Chr05g0214371 Lupinus albus HOM05D005983 ORTHO05D007438 6.3e-114 415.2 416 52.4
Solyc06g060780.4 Solanum lycopersicum HOM05D005983 ORTHO05D007438 6.3e-114 415.2 404 54.5
Ca_24588_v3 Cicer arietinum L. HOM05D005983 ORTHO05D007438 8.2e-114 414.8 414 53.1
Sopen06g020900 Solanum pennellii HOM05D005983 ORTHO05D007438 8.2e-114 414.8 404 54.5
Hma1.2p1_0316F.1_g122960 Hydrangea macrophylla HOM05D005983 ORTHO05D007438 1.1e-113 414.5 411 53.0
Medtr5g012880 Medicago truncatula HOM05D005983 ORTHO05D007438 1.1e-113 414.5 423 53.2
QL12p011684 Quercus lobata HOM05D005983 ORTHO05D007438 1.1e-113 414.5 427 52.7
Sed0018188 Sechium edule HOM05D005983 ORTHO05D007438 1.1e-113 414.5 410 52.7
CARHR223230 Cardamine hirsuta HOM05D005983 ORTHO05D007438 4.1e-113 412.5 433 52.0
Nitab4.5_0000618g0100 Nicotiana tabacum HOM05D005983 ORTHO05D007438 4.1e-113 412.5 403 54.8
Peaxi162Scf01022g00324 Petunia axillaris HOM05D005983 ORTHO05D007438 5.3e-113 412.1 402 54.7
Psat2g176840 Pisum sativum HOM05D005983 ORTHO05D007438 5.3e-113 412.1 428 52.6
Manes.01G082200 Manihot esculenta HOM05D005983 ORTHO05D007438 1.2e-112 411.0 387 53.7
TPR.G18111 Trifolium pratense HOM05D005983 ORTHO05D007438 1.5e-112 410.6 406 53.2
Phvul.002G057200 Phaseolus vulgaris HOM05D005983 ORTHO05D007438 3.4e-112 409.5 409 51.6
FAN08G1502 Fragaria x ananassa HOM05D005983 ORTHO05D007438 1.7e-111 407.1 400 55.0
FvH4_5g19150 Fragaria vesca HOM05D005983 ORTHO05D007438 2.9e-111 406.4 409 53.8
FAN18G0274 Fragaria x ananassa HOM05D005983 ORTHO05D007438 2.9e-111 406.4 409 53.8
HanXRQChr16g0510961 Helianthus annuus HOM05D005983 ORTHO05D007438 2.9e-111 406.4 445 50.8
CAN.G62.33 Capsicum annuum HOM05D005983 ORTHO05D007438 8.5e-111 404.8 441 51.5
FAN04G1995 Fragaria x ananassa HOM05D005983 ORTHO05D007438 1.1e-110 404.4 417 52.8
ECA233G1798 Erigeron canadensis HOM05D005983 ORTHO05D007438 1.9e-110 403.7 431 51.5
EL10Ac5g12377 Beta vulgaris HOM05D005983 ORTHO05D007438 4.2e-110 402.5 450 48.9
GSVIVG01004724001 Vitis vinifera HOM05D005983 ORTHO05D007438 2.7e-109 399.8 409 52.8
unitig_744.g24471 Utricularia gibba HOM05D005983 ORTHO05D007438 3.6e-109 399.4 406 50.5
PSO357G0330 Papaver somniferum HOM05D005983 ORTHO05D007438 4.6e-109 399.1 409 50.6
CsaV3_5G004310 Cucumis sativus L. HOM05D005983 ORTHO05D007438 7.9e-109 398.3 388 53.1
ATR0317G025 Amborella trichopoda HOM05D005983 ORTHO05D007438 1.4e-108 397.5 430 51.4
PSO170G1657 Papaver somniferum HOM05D005983 ORTHO05D007438 2.3e-108 396.7 409 50.6
Os03g0101900 Oryza sativa ssp. japonica HOM05D005983 ORTHO05D007438 3.9e-108 396.0 424 51.7
SMO351G0559 Selaginella moellendorffii HOM05D005983 ORTHO05D007438 2.0e-107 393.7 402 52.7
Lsat_1_v5_gn_6_18021 Lactuca sativa HOM05D005983 ORTHO05D007438 3.7e-106 389.4 423 51.5
Atru.chr9.1290 Acer truncatum HOM05D005983 ORTHO05D007438 1.5e-104 384.0 336 58.3
Dinv21647 Davidia involucrata HOM05D005983 ORTHO05D007438 2.0e-104 383.6 404 51.5
Ah.12g054210 Amaranthus hybridus HOM05D005983 ORTHO05D007438 1.3e-103 380.9 449 49.7
AUR62007103 Chenopodium quinoa HOM05D005983 ORTHO05D007438 1.3e-103 380.9 430 49.5
AUR62019966 Chenopodium quinoa HOM05D005983 ORTHO05D007438 3.8e-103 379.4 430 49.5
Sc01g0008340 Simmondsia chinensis HOM05D005983 ORTHO05D007438 8.5e-103 378.3 356 55.1
SGA_v2.0_scaffold104G30169 Striga asiatica HOM05D005983 ORTHO05D007438 1.4e-102 377.5 539 43.4
Rhsim01G0100800 Rhododendron simsii HOM05D005983 ORTHO05D007438 1.9e-102 377.1 541 42.7
arahy.Tifrunner.gnm1.ann1.0NSC2B Arachis hypogaea HOM05D005983 ORTHO05D007438 3.2e-102 376.3 325 58.2
Hund14571 Selenicereus undatus HOM05D005983 ORTHO05D007438 9.4e-102 374.8 413 50.6
CBR_g40206 Chara braunii HOM05D005983 ORTHO05D007438 2.3e-100 370.2 451 45.9
Cpa.g.sc29.178 Carica papaya HOM05D005983 ORTHO05D007438 2.6e-99 366.7 310 58.1
HPP92_015120 Vanilla planifolia HOM05D005983 ORTHO05D007438 4.4e-99 365.9 375 52.3
ClCG01G004150 Citrullus lanatus HOM05D005983 ORTHO05D007438 2.2e-98 363.6 420 47.6
Duzib205G1394 Durio zibethinus HOM05D005983 ORTHO05D007438 1.7e-95 354.0 425 47.5
TAR713G0001 Trochodendron aralioides HOM05D005983 ORTHO05D007438 3.0e-92 343.2 308 57.1
Thhalv10025592m.g Eutrema salsugineum HOM05D005983 ORTHO05D007438 6.8e-84 315.5 283 57.6
THA.LOC104815498 Tarenaya hassleriana HOM05D005983 ORTHO05D007438 1.0e-79 301.6 333 49.8
vmacro00190 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 8.6e-63 245.4 353 45.3
Lj2A220G37 Lonicera japonica HOM05D005983 ORTHO05D007438 5.8e-59 232.6 188 61.7
Haze_01067 Corylus avellana HOM05D005983 ORTHO05D007438 1.1e-57 228.4 238 51.7
Actinidia02145 Actinidia chinensis HOM05D005983 ORTHO05D007438 3.5e-56 223.4 182 59.3
CDE04G1583 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 1.6e-53 214.5 251 51.4
Actinidia02144 Actinidia chinensis HOM05D005983 ORTHO05D007438 8.0e-53 212.2 179 62.6
Actinidia14415 Actinidia chinensis HOM05D005983 ORTHO05D007438 8.9e-52 208.8 179 61.5
Nitab4.5_0001076g0010 Nicotiana tabacum HOM05D005983 ORTHO05D007438 7.5e-51 205.7 262 47.7
Cfa023268 Carpinus fangiana HOM05D005983 ORTHO05D007438 7.1e-49 199.1 477 33.1
Actinidia14414 Actinidia chinensis HOM05D005983 ORTHO05D007438 1.0e-39 168.7 144 56.2
PRCOL_00002495 Prasinoderma coloniale HOM05D000251 ORTHO05D007438 5.6e-38 162.9 359 33.7
Lj2A220G36 Lonicera japonica HOM05D005983 ORTHO05D007438 1.4e-36 158.3 154 56.5
BcaC02g09019 Brassica carinata HOM05D005983 ORTHO05D007438 4.9e-34 149.8 229 42.4
C04p39670 Brassica napus HOM05D005983 ORTHO05D007438 4.9e-34 149.8 229 42.4
BolC4t25537H Brassica oleracea HOM05D005983 ORTHO05D007438 4.9e-34 149.8 229 42.4
C09p44540 Brassica napus HOM05D005983 ORTHO05D007438 7.1e-33 146.0 229 41.9
Glyma.11G034500 Glycine max HOM05D005983 ORTHO05D007438 1.2e-32 145.2 146 52.7
Haze_01069 Corylus avellana HOM05D005983 ORTHO05D007438 1.0e-31 142.1 142 54.2
CDE04G0678 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 8.7e-31 139.0 115 53.0
SEGI_17682 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 9.6e-22 109.0 98 56.1
vmacro00191 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 2.8e-21 107.5 133 47.4
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 1.5e-19 101.7 267 30.3
Ca_29382_v3 Cicer arietinum L. HOM05D003620 ORTHO05D007438 3.2e-17 94.0 274 27.7
SEGI_40726 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 2.1e-16 91.3 89 53.9
BcaC03g14715 Brassica carinata HOM05D005983 ORTHO05D007438 6.0e-16 89.7 171 35.1
C02p21550 Brassica napus HOM05D005983 ORTHO05D007438 6.0e-16 89.7 171 35.1
BolC2t08295H Brassica oleracea HOM05D005983 ORTHO05D007438 6.0e-16 89.7 171 35.1
BcaC07g42540 Brassica carinata HOM05D005983 ORTHO05D007438 2.5e-14 84.3 111 43.2
SEGI_40136 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 1.4e-12 78.6 102 44.1
RcHm_v2.0_Chr7g0203671 Rosa chinensis HOM05D005983 ORTHO05D007438 1.2e-11 75.5 107 42.1
BraA08t34844Z Brassica rapa HOM05D005983 ORTHO05D007438 4.5e-11 73.6 137 36.5
PRCOL_00006167 Prasinoderma coloniale HOM05D003620 ORTHO05D004261 7.6e-11 72.8 300 27.0
FAN13G0557 Fragaria x ananassa HOM05D005983 ORTHO05D007438 5.5e-09 66.6 97 41.2
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 4.6e-08 63.5 311 25.7
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 1.8e-07 61.6 286 25.9
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 2.3e-07 61.2 286 26.2
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 3.0e-07 60.8 286 25.9
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 3.0e-07 60.8 286 25.5
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 3.0e-07 60.8 295 26.1
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 3.0e-07 60.8 298 27.2
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 5.1e-07 60.1 291 26.5
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 5.1e-07 60.1 291 28.2
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 5.1e-07 60.1 291 28.2
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 5.1e-07 60.1 291 28.2
EL10Ac4g08941 Beta vulgaris HOM05D003620 ORTHO05D004261 6.7e-07 59.7 278 26.3
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 6.7e-07 59.7 291 27.8
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 6.7e-07 59.7 289 27.0
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 1.9e-06 58.2 286 25.5
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 3.3e-06 57.4 222 27.9
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 3.3e-06 57.4 289 26.6
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 3.3e-06 57.4 289 26.6
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 4.3e-06 57.0 287 26.5
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 9.6e-06 55.8 286 25.2
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 9.6e-06 55.8 286 25.2
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 9.6e-06 55.8 286 25.2
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 9.6e-06 55.8 286 25.2
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 9.6e-06 55.8 286 25.2
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 9.6e-06 55.8 286 25.2
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 9.6e-06 55.8 286 25.2


User provided reference genes

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