Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 0.0e+00 3483.7 1766 100.0
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 1.6e-290 1003.8 2146 32.8
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 9.9e-280 968.0 2128 33.1
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 2.6e-264 916.8 2095 31.9
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 1.9e-262 910.6 2106 31.0
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 2.7e-261 906.7 2109 31.8
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 6.6e-260 902.1 2112 30.9
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 1.5e-259 901.0 2116 31.6
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 1.5e-259 901.0 2105 31.0
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.5e-259 900.2 2129 31.3
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 6.2e-258 895.6 2109 30.9
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 8.1e-258 895.2 2128 31.2
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 8.1e-258 895.2 2128 31.2
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 1.1e-257 894.8 2102 30.6
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.8e-257 894.0 2175 30.9
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 2.4e-257 893.6 2111 31.2
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 5.3e-257 892.5 2082 31.6
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 6.9e-257 892.1 2091 30.8
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 6.9e-257 892.1 2129 31.0
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 9.9e-256 888.3 2108 31.1
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 9.9e-256 888.3 2103 30.8
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 2.2e-255 887.1 2044 32.3
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 2.4e-254 883.6 2148 30.8
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 4.2e-254 882.9 2089 30.5
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 1.6e-253 880.9 2034 31.4
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.6e-253 880.9 2101 31.2
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 4.6e-253 879.4 2086 30.3
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 4.6e-253 879.4 2133 30.9
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 6.0e-253 879.0 2102 30.5
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 1.3e-252 877.9 2122 30.8
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 2.3e-252 877.1 2122 30.7
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 3.0e-252 876.7 2095 30.5
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 6.7e-252 875.5 2093 30.3
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 1.1e-251 874.8 2105 30.9
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.9e-251 874.0 2094 30.9
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 2.5e-251 873.6 2094 30.1
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 2.5e-251 873.6 2103 30.9
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 7.4e-251 872.1 2083 30.8
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 7.4e-251 872.1 2092 30.7
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 1.6e-250 870.9 2096 30.9
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 2.8e-250 870.2 2102 30.3
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 4.8e-250 869.4 2082 31.2
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 8.1e-250 868.6 2105 30.2
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 1.1e-249 868.2 2094 30.6
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 1.1e-249 868.2 2085 30.5
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 1.8e-249 867.5 2095 30.7
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 3.1e-249 866.7 2082 30.5
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 3.1e-249 866.7 2091 30.4
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 3.1e-249 866.7 2039 30.8
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 5.3e-249 865.9 2084 31.0
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 1.2e-248 864.8 2120 30.6
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.6e-248 863.6 2101 30.5
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 9.9e-248 861.7 2080 30.9
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 1.7e-247 860.9 2085 30.8
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 1.7e-247 860.9 2085 30.5
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 2.2e-247 860.5 2084 30.8
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 2.2e-247 860.5 2050 30.7
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 3.8e-247 859.8 2041 30.4
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 4.9e-247 859.4 2091 30.3
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 4.9e-247 859.4 2043 30.2
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 2.4e-246 857.1 2080 31.3
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 2.3e-244 850.5 2084 31.0
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 1.1e-243 848.2 2084 31.0
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 1.9e-243 847.4 2063 31.4
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 3.3e-243 846.7 2087 30.8
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 9.6e-243 845.1 2111 30.6
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 9.6e-243 845.1 2113 29.6
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 3.7e-242 843.2 2107 30.6
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 6.2e-242 842.4 2088 29.8
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 8.2e-242 842.0 2098 30.2
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 8.2e-242 842.0 2105 30.0
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 2.9e-239 833.6 2111 30.5
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 4.9e-239 832.8 2107 30.7
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.1e-238 831.6 2055 30.9
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.4e-238 831.2 2063 30.9
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 9.3e-238 828.6 2020 30.7
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 9.3e-238 828.6 2059 30.2
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 3.5e-237 826.6 1905 31.4
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 6.0e-237 825.9 2107 30.1
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 6.0e-237 825.9 2089 29.6
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 2.3e-236 823.9 2107 30.1
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 3.9e-236 823.2 2097 30.0
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 2.5e-235 820.5 2098 30.4
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 4.8e-234 816.2 1252 38.5
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 8.2e-234 815.5 2030 30.9
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 1.4e-233 814.7 2100 29.2
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.4e-233 813.9 2029 30.4
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 6.5e-231 805.8 2022 30.2
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 7.2e-230 802.4 2082 30.2
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 1.4e-225 788.1 1252 36.8
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 1.2e-224 785.0 2109 30.3
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 2.0e-224 784.3 2102 29.1
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 7.0e-217 759.2 1105 40.3
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 1.2e-216 758.4 1139 40.2
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.1e-214 751.9 1105 39.9
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 6.7e-212 742.7 1108 40.1
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 1.3e-207 728.4 2099 28.6
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 2.0e-203 714.5 2185 28.6
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 2.6e-203 714.1 1914 28.4
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 9.7e-203 712.2 1971 29.9
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 8.2e-202 709.1 2089 27.7
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 5.3e-201 706.4 1109 37.9
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 4.2e-198 696.8 827 45.2
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.1e-182 645.6 1341 33.5
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 7.0e-177 626.3 1736 28.8
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 5.6e-166 590.1 1506 29.5
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 5.1e-143 513.8 797 39.0
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 2.8e-141 508.1 1487 28.2
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 8.2e-117 426.8 696 37.2
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 1.6e-112 412.5 1415 27.0
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 3.9e-111 407.9 816 32.8
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 8.2e-109 400.2 665 37.0
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 4.5e-107 394.4 1423 26.1
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 1.1e-100 373.2 1405 26.3
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.6e-88 332.8 449 43.7
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 9.1e-84 317.0 456 39.3
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 1.3e-74 286.6 259 56.4
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 7.2e-73 280.8 1324 24.8
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 3.2e-60 238.8 320 40.9
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 1.8e-55 223.0 328 39.6
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 2.3e-50 206.1 344 36.0
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 5.2e-47 194.9 1068 22.0
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 4.0e-39 168.7 219 41.6
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 3.4e-38 165.6 165 50.3
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 3.8e-37 162.2 568 26.8
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.4e-31 143.7 122 57.4
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.2e-30 140.6 147 52.4
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 2.9e-29 136.0 154 46.8
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 3.5e-27 129.0 393 27.0
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 1.1e-23 117.5 522 23.2
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.1e-23 117.5 108 59.3
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 1.4e-23 117.1 133 53.4
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 5.3e-23 115.2 140 42.1
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.2e-22 114.0 335 29.9
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 6.4e-21 108.2 129 40.3
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.6e-19 103.6 156 41.0
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.1e-19 103.2 161 37.3
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 3.0e-18 99.4 96 52.1
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 8.7e-18 97.8 122 38.5
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 5.6e-17 95.1 142 34.5
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 3.4e-14 85.9 91 51.6
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 4.6e-11 75.5 112 33.9
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.3e-10 73.9 125 30.4
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.3e-10 73.2 324 27.5
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 2.8e-08 66.2 203 28.1
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 4.5e-06 58.9 104 37.5


User provided reference genes

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