Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 2.2e-245 852.0 462 100.0
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 7.6e-49 199.1 273 43.2
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 3.8e-48 196.8 281 41.3
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 6.4e-48 196.1 258 44.6
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.1e-47 195.3 320 40.6
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 2.5e-47 194.1 278 41.7
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 1.0e-45 188.7 277 41.5
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.3e-45 188.3 244 43.0
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 8.7e-45 185.7 284 41.9
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 2.5e-44 184.1 261 40.2
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 9.6e-44 182.2 255 39.6
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 1.3e-43 181.8 297 40.4
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.8e-43 180.6 279 38.0
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 3.1e-42 177.2 212 45.8
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 2.9e-40 170.6 217 42.9
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 3.8e-40 170.2 263 38.8
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 8.4e-40 169.1 259 37.8
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.1e-39 168.7 257 38.1
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.1e-39 168.7 279 37.6
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 2.5e-39 167.5 301 38.9
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 4.2e-39 166.8 356 32.9
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 7.1e-39 166.0 320 36.9
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 9.3e-39 165.6 212 39.6
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 9.3e-39 165.6 356 34.8
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 2.1e-38 164.5 195 46.7
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 3.5e-38 163.7 277 36.5
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 3.5e-38 163.7 261 36.0
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 3.5e-38 163.7 274 36.5
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 6.0e-38 162.9 256 38.3
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 6.0e-38 162.9 256 38.3
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 6.0e-38 162.9 275 36.7
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 1.3e-37 161.8 253 38.3
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 2.3e-37 161.0 257 37.0
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 2.5e-36 157.5 278 36.0
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 2.5e-36 157.5 256 37.1
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 5.7e-36 156.4 279 35.8
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 3.7e-35 153.7 175 45.1
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 2.4e-34 151.0 276 34.8
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 4.1e-34 150.2 333 30.9
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 9.0e-34 149.1 304 35.5
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 1.5e-33 148.3 271 34.3
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 5.9e-33 146.4 287 33.1
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.0e-32 145.6 277 33.9
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 5.0e-32 143.3 187 41.2
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 1.6e-30 138.3 205 36.6
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.6e-30 138.3 192 39.6
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 2.1e-30 137.9 190 37.9
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 3.9e-29 133.7 286 32.2
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 6.7e-29 132.9 190 40.0
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 5.7e-28 129.8 198 37.4
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 3.1e-26 124.0 158 41.1
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 1.3e-24 118.6 207 31.4
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 2.5e-23 114.4 180 36.7
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 9.4e-23 112.5 157 36.9
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 1.2e-22 112.1 264 31.8
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.2e-22 112.1 271 32.1
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.0e-21 107.5 225 33.3
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.1e-20 105.5 297 30.3
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.5e-20 105.1 146 36.3
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 2.0e-20 104.8 153 37.3
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 2.2e-19 101.3 148 35.8
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 3.7e-19 100.5 161 32.9
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 4.8e-19 100.1 154 35.7
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 4.8e-19 100.1 165 32.7
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 6.3e-19 99.8 173 34.1
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 6.3e-19 99.8 148 34.5
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 8.2e-19 99.4 152 36.2
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 1.8e-18 98.2 154 35.1
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.8e-18 98.2 165 32.1
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 3.1e-18 97.4 154 35.1
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.1e-18 97.4 152 34.2
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 5.3e-18 96.7 157 35.0
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 2.0e-17 94.7 147 34.0
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 2.6e-17 94.4 185 33.5
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 3.5e-17 94.0 148 35.8
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 3.5e-17 94.0 244 31.1
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 5.9e-17 93.2 130 38.5
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 1.0e-16 92.4 150 35.3
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.2e-16 91.3 148 33.8
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 5.0e-16 90.1 158 37.3
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 5.0e-16 90.1 180 30.6
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 8.5e-16 89.4 168 32.1
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 8.5e-16 89.4 245 29.8
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 8.5e-16 89.4 165 32.7
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.4e-15 88.6 152 34.2
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.9e-15 88.2 169 32.0
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 4.2e-15 87.0 148 33.1
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 5.5e-15 86.7 152 33.6
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 1.2e-14 85.5 147 30.6
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 4.7e-14 83.6 205 29.8
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 4.7e-14 83.6 149 30.9
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 6.1e-14 83.2 247 26.7
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 8.0e-14 82.8 141 36.2
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.0e-13 82.4 71 50.7
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.0e-13 82.4 71 50.7
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.8e-13 81.6 96 36.5
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.8e-13 81.6 135 31.1
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 2.3e-13 81.3 169 32.5
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 3.0e-13 80.9 135 36.3
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 3.9e-13 80.5 163 33.1
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 6.7e-13 79.7 150 34.0
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 6.7e-13 79.7 150 34.0
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 8.8e-13 79.3 150 34.0
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 2.0e-12 78.2 163 32.5
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 2.6e-12 77.8 233 29.6
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 3.3e-12 77.4 148 30.4
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 4.4e-12 77.0 172 30.8
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 4.4e-12 77.0 157 32.5
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 4.4e-12 77.0 148 30.4
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 3.7e-11 73.9 138 31.9
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 4.8e-11 73.6 152 31.6
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 8.2e-11 72.8 150 32.7
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 2.4e-10 71.2 149 30.2
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 9.1e-10 69.3 148 28.4
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 9.1e-10 69.3 105 34.3
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 9.1e-10 69.3 105 34.3
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 3.5e-09 67.4 141 28.4
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 4.5e-09 67.0 86 38.4
PRCOL_00006794 Prasinoderma coloniale HOM05D008124 ORTHO05D004072 1.7e-08 65.1 227 26.9
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 2.2e-08 64.7 88 35.2
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 2.9e-08 64.3 142 34.5
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 2.9e-08 64.3 147 28.6
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 3.8e-08 63.9 157 26.1
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 1.5e-07 62.0 246 27.2
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 3.2e-07 60.8 40 55.0
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 4.2e-07 60.5 136 31.6
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 5.5e-07 60.1 160 28.8
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 1.2e-06 58.9 121 33.1
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 3.6e-06 57.4 193 26.4
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 8.0e-06 56.2 31 67.7
Nitab4.5_0000110g0350 Nicotiana tabacum HOM05D001883 ORTHO05D002184 8.0e-06 56.2 62 45.2


User provided reference genes

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