Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 0.0e+00 2180.6 1108 100.0
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.5e-281 973.4 983 55.4
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.2e-278 963.8 1020 53.8
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.7e-275 952.6 1046 52.5
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 1.1e-273 947.2 1031 52.2
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 8.1e-264 914.4 1047 50.4
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 3.4e-262 909.1 1088 49.8
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 1.6e-259 900.2 1030 50.8
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 1.0e-258 897.5 1054 50.8
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 2.3e-258 896.3 1042 50.7
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 1.9e-257 893.3 1038 49.9
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 2.5e-257 892.9 1059 50.2
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 5.6e-257 891.7 1036 50.3
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 7.4e-257 891.3 1037 50.2
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 3.6e-256 889.0 1031 50.0
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 4.8e-256 888.6 1033 50.3
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 4.8e-256 888.6 1025 50.2
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 1.4e-255 887.1 1029 50.4
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.8e-255 886.7 993 51.1
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 6.9e-255 884.8 1036 49.8
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 6.9e-255 884.8 1006 51.2
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 4.5e-254 882.1 1057 49.4
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 5.8e-254 881.7 1005 50.9
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 7.6e-254 881.3 1026 49.6
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 3.8e-253 879.0 1059 48.6
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 4.9e-253 878.6 1036 49.8
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 1.1e-252 877.5 1039 50.0
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 1.1e-252 877.5 1021 49.7
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 1.4e-252 877.1 1011 49.9
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 4.2e-252 875.5 1002 50.2
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 5.5e-252 875.2 1030 49.8
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 1.2e-251 874.0 1067 48.4
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.6e-251 873.6 1033 49.6
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 2.7e-251 872.8 1032 49.8
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 2.7e-251 872.8 1069 48.0
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 6.0e-251 871.7 1067 48.4
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 1.3e-250 870.5 1046 49.0
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 1.8e-250 870.2 1051 48.7
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 3.0e-250 869.4 1046 48.9
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.1e-250 868.6 1043 48.9
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 5.1e-250 868.6 1061 48.6
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 6.7e-250 868.2 1038 48.1
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 1.1e-249 867.5 1040 49.7
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 3.3e-249 865.9 1010 49.8
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 3.3e-249 865.9 1045 49.5
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 4.3e-249 865.5 1006 49.5
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 9.6e-249 864.4 1003 50.0
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 1.6e-248 863.6 1056 48.5
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 2.1e-248 863.2 1049 49.1
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 2.8e-248 862.8 1008 50.1
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 2.8e-248 862.8 1042 48.3
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 6.2e-248 861.7 1038 47.9
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 8.1e-248 861.3 1012 50.2
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 3.1e-247 859.4 1044 48.4
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 9.0e-247 857.8 1022 49.0
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 1.2e-246 857.4 998 49.5
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 1.5e-246 857.1 1057 47.9
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 2.0e-246 856.7 1001 50.0
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 2.0e-246 856.7 1048 48.3
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 2.0e-246 856.7 1048 48.3
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 2.6e-246 856.3 1028 49.3
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 4.5e-246 855.5 1032 48.8
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 4.5e-246 855.5 1048 47.9
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 4.5e-246 855.5 1065 48.4
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 1.3e-245 854.0 1002 48.8
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 1.7e-245 853.6 1031 48.3
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 1.7e-245 853.6 1036 48.7
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.2e-245 853.2 1037 48.3
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 2.2e-245 853.2 1044 48.2
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 2.2e-245 853.2 1037 48.1
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 6.5e-245 851.7 1026 49.2
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 6.5e-245 851.7 1045 47.5
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 1.4e-244 850.5 1085 47.1
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 5.5e-244 848.6 1035 48.9
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 7.1e-244 848.2 1010 48.4
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 1.2e-243 847.4 1000 49.8
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 2.1e-243 846.7 1033 48.4
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 2.1e-243 846.7 1058 47.1
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 3.5e-243 845.9 1105 45.6
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 4.6e-243 845.5 1011 48.4
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 1.3e-242 844.0 1001 49.1
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 1.8e-242 843.6 1063 47.6
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 2.3e-242 843.2 1028 48.4
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 3.0e-242 842.8 1087 47.7
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 3.0e-242 842.8 1034 49.0
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 6.7e-242 841.6 1025 47.6
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 1.9e-241 840.1 1002 49.1
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 1.9e-241 840.1 1002 49.0
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 2.5e-241 839.7 1041 47.4
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 3.3e-241 839.3 1008 49.1
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 4.3e-241 839.0 1003 49.0
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 5.7e-241 838.6 1025 47.7
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 7.4e-241 838.2 1050 47.8
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 7.4e-241 838.2 1036 48.7
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 7.4e-241 838.2 1006 48.0
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 7.4e-241 838.2 1042 48.0
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 9.6e-241 837.8 1039 47.5
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 4.8e-240 835.5 1031 47.5
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 6.3e-240 835.1 1024 47.6
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 8.2e-240 834.7 1030 48.4
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 8.2e-240 834.7 1059 47.7
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 1.1e-239 834.3 1028 48.1
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 1.4e-239 833.9 1030 48.3
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 1.8e-239 833.6 1034 48.5
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 5.3e-239 832.0 1030 48.5
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 2.0e-238 830.1 992 48.9
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 1.3e-237 827.4 1032 47.7
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 5.0e-237 825.5 1042 47.8
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 1.4e-236 823.9 999 48.5
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 5.5e-236 822.0 1002 48.2
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 9.3e-236 821.2 1048 46.5
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 3.6e-235 819.3 1035 47.4
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 6.1e-235 818.5 1032 48.3
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.8e-234 817.0 883 52.4
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.9e-234 815.8 1028 48.1
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 1.1e-233 814.3 1059 47.6
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 5.7e-233 812.0 1015 47.7
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 7.4e-233 811.6 1030 48.1
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 3.1e-231 806.2 1039 46.8
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 4.1e-231 805.8 1042 47.4
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 4.1e-231 805.8 935 50.2
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 4.5e-230 802.4 1032 46.6
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 3.8e-229 799.3 1076 46.0
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 2.7e-227 793.1 924 49.9
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.5e-225 787.3 958 49.4
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 4.4e-225 785.8 1014 46.7
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 2.0e-222 776.9 1038 46.1
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 6.1e-219 765.4 923 50.2
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.7e-216 757.3 922 50.3
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 2.2e-213 746.9 960 47.0
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 7.5e-209 731.9 1059 44.6
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 5.5e-204 715.7 1024 44.5
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 2.0e-201 707.2 1045 42.9
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.1e-195 687.2 796 50.6
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 3.0e-194 683.3 845 47.3
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 3.4e-193 679.9 871 47.6
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.6e-190 671.0 1009 42.2
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.3e-184 651.4 972 43.3
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 6.0e-174 615.9 845 45.4
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 5.6e-172 609.4 758 49.2
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 3.6e-171 606.7 857 45.2
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 9.9e-169 598.6 600 57.5
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 1.7e-165 587.8 1114 37.2
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 1.8e-162 577.8 1018 40.5
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 2.0e-145 521.2 649 49.0
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 6.4e-144 516.2 999 36.8
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 8.4e-136 489.2 655 45.5
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.4e-135 487.6 839 40.9
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 4.6e-126 456.8 647 44.0
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 7.7e-113 412.9 734 41.3
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 2.4e-106 391.3 670 40.4
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 5.0e-104 383.6 626 40.3
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 1.0e-85 322.8 628 36.3
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.7e-83 315.5 342 52.0
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 2.3e-72 278.5 384 41.9
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 8.6e-64 250.0 1044 27.0
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 5.2e-61 240.7 545 33.9
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.7e-59 235.7 258 51.9
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 7.8e-57 226.9 539 32.3
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.3e-55 221.1 233 52.4
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.6e-54 218.0 218 56.4
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 4.0e-53 214.5 905 26.0
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 9.9e-52 209.9 275 46.2
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.4e-50 206.1 160 64.4
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 3.8e-43 181.4 286 40.9
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 3.0e-32 145.2 196 40.8
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.0e-24 120.2 155 47.1
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.5e-20 106.3 127 41.7
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.1e-18 100.1 125 42.4
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.6e-17 96.3 156 40.4
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 6.0e-17 94.4 155 39.4
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 9.6e-15 87.0 127 40.9
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 2.4e-13 82.4 62 67.7
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 6.9e-13 80.9 79 45.6
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 6.9e-13 80.9 79 45.6


User provided reference genes

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