Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0130s0030 Marchantia polymorpha HOM05D003027 ORTHO05D003455 0.0e+00 1613.6 855 100.0
Pp3c13_15030 Physcomitrium patens HOM05D003027 ORTHO05D003455 8.6e-80 302.8 853 35.6
Pp3c3_16820 Physcomitrium patens HOM05D003027 ORTHO05D003455 3.5e-73 280.8 843 35.7
AagrBONN_evm.TU.Sc2ySwM_344.4987 Anthoceros agrestis HOM05D003027 ORTHO05D003455 6.9e-61 240.0 642 35.0
TPR.G22687 Trifolium pratense HOM05D003027 ORTHO05D003455 2.5e-42 178.3 588 34.7
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 3.2e-42 177.9 875 30.1
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 4.2e-42 177.6 875 29.7
Medtr7g088890 Medicago truncatula HOM05D003027 ORTHO05D003455 5.5e-42 177.2 628 33.1
TAR623G0586 Trochodendron aralioides HOM05D003027 ORTHO05D003455 1.3e-40 172.6 633 31.4
Migut.J01624 Erythranthe guttata HOM05D003027 ORTHO05D003455 3.0e-40 171.4 748 31.3
Migut.K00152 Erythranthe guttata HOM05D003027 ORTHO05D003455 1.5e-39 169.1 612 31.7
SEGI_25646 Sequoiadendron giganteum HOM05D003027 ORTHO05D003455 1.9e-39 168.7 577 31.9
Aqoxy1G00075 Aquilegia oxysepala HOM05D003027 ORTHO05D003455 2.5e-39 168.3 635 32.1
Actinidia17700 Actinidia chinensis HOM05D003027 ORTHO05D003455 5.7e-39 167.2 672 31.2
CSS0031087 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 9.6e-39 166.4 598 32.9
Cc06_g20180 Coffea canephora HOM05D003027 ORTHO05D003455 9.6e-39 166.4 592 33.3
PSO384G3381 Papaver somniferum HOM05D003027 ORTHO05D003455 9.6e-39 166.4 633 31.4
Dinv36122 Davidia involucrata HOM05D003027 ORTHO05D003455 1.3e-38 166.0 636 32.2
Ah.04g150710 Amaranthus hybridus HOM05D003027 ORTHO05D003455 1.6e-38 165.6 634 30.9
PSO339G5716 Papaver somniferum HOM05D003027 ORTHO05D003455 1.6e-38 165.6 635 31.8
Dinv20764 Davidia involucrata HOM05D003027 ORTHO05D003455 3.7e-38 164.5 632 32.6
Peaxi162Scf00076g00222 Petunia axillaris HOM05D003027 ORTHO05D003455 3.7e-38 164.5 586 33.3
Aa31LG3G1070 Aethionema arabicum HOM05D003027 ORTHO05D003455 4.8e-38 164.1 628 30.7
MD07G1018800 Malus domestica HOM05D003027 ORTHO05D003455 8.2e-38 163.3 587 32.7
MBI19_g04333_MAGBIO Magnolia biondii HOM05D003027 ORTHO05D003455 1.1e-37 162.9 668 30.8
Phvul.001G119300 Phaseolus vulgaris HOM05D003027 ORTHO05D003455 1.1e-37 162.9 630 32.4
Lj1A1084T71 Lonicera japonica HOM05D003027 ORTHO05D003455 1.4e-37 162.5 805 29.9
CSS0006760 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 1.8e-37 162.2 753 30.4
Glyma.19G126800 Glycine max HOM05D003027 ORTHO05D003455 3.1e-37 161.4 623 33.1
CSS0013065 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 5.3e-37 160.6 753 30.4
Oeu044242.3 Olea europaea HOM05D003027 ORTHO05D003455 5.3e-37 160.6 652 32.7
arahy.Tifrunner.gnm1.ann1.470EJV Arachis hypogaea HOM05D003027 ORTHO05D003455 6.9e-37 160.2 571 32.0
Potri.006G034500 Populus trichocarpa HOM05D003027 ORTHO05D003455 6.9e-37 160.2 628 32.6
Thecc.05G123000 Theobroma cacao HOM05D003027 ORTHO05D003455 6.9e-37 160.2 591 32.5
Ciclev10011169m.g Citrus clementina HOM05D003027 ORTHO05D003455 9.0e-37 159.8 704 31.0
COL.COLO4_26642 Corchorus olitorius HOM05D003027 ORTHO05D003455 9.0e-37 159.8 654 31.5
DCAR_013537 Daucus carota HOM05D003027 ORTHO05D003455 9.0e-37 159.8 591 32.7
Sabra06G0023000 Salix brachista HOM05D003027 ORTHO05D003455 9.0e-37 159.8 703 31.3
THA.LOC104803232 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 9.0e-37 159.8 592 32.4
arahy.Tifrunner.gnm1.ann1.1QMW5J Arachis hypogaea HOM05D003027 ORTHO05D003455 1.2e-36 159.5 571 32.2
Cfa019972 Carpinus fangiana HOM05D003027 ORTHO05D003455 1.2e-36 159.5 591 32.0
Sc25g0005470 Simmondsia chinensis HOM05D003027 ORTHO05D003455 1.2e-36 159.5 635 33.1
CAN.G960.76 Capsicum annuum HOM05D003027 ORTHO05D003455 1.5e-36 159.1 576 32.1
Prupe.2G020400 Prunus persica HOM05D003027 ORTHO05D003455 1.5e-36 159.1 583 32.8
PGR042G3138 Punica granatum HOM05D003027 ORTHO05D003455 1.5e-36 159.1 635 32.6
Thhalv10016317m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 2.6e-36 158.3 624 30.8
Lj1g0009474 Lotus japonicus HOM05D003027 ORTHO05D003455 2.6e-36 158.3 587 32.9
Nitab4.5_0000869g0140 Nicotiana tabacum HOM05D003027 ORTHO05D003455 2.6e-36 158.3 591 33.2
Carub.0004s2327 Capsella rubella HOM05D003027 ORTHO05D003455 3.4e-36 157.9 626 30.8
CsaV3_3G039880 Cucumis sativus L. HOM05D003027 ORTHO05D003455 3.4e-36 157.9 797 31.9
DCAR_020597 Daucus carota HOM05D003027 ORTHO05D003455 7.6e-36 156.8 647 30.3
THA.LOC104824380 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 7.6e-36 156.8 748 29.0
Ah.13g077130 Amaranthus hybridus HOM05D003027 ORTHO05D003455 1.0e-35 156.4 744 29.3
AL4G38920 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 1.0e-35 156.4 604 30.3
GSVIVG01025788001 Vitis vinifera HOM05D003027 ORTHO05D003455 1.0e-35 156.4 581 31.7
Haze_20266 Corylus avellana HOM05D003027 ORTHO05D003455 1.3e-35 156.0 642 31.0
MELO3C009730.2 Cucumis melo HOM05D003027 ORTHO05D003455 1.7e-35 155.6 795 30.4
ECA248G3907 Erigeron canadensis HOM05D003027 ORTHO05D003455 1.7e-35 155.6 642 31.8
Atru.chr1.1410 Acer truncatum HOM05D003027 ORTHO05D003455 2.2e-35 155.2 650 31.2
Sp4g23270 Schrenkiella parvula HOM05D003027 ORTHO05D003455 2.9e-35 154.8 646 29.9
SGA_v2.0_scaffold69G23173 Striga asiatica HOM05D003027 ORTHO05D003455 2.9e-35 154.8 737 30.0
VMungo1383G0888 Vigna mungo HOM05D003027 ORTHO05D003455 2.9e-35 154.8 624 32.2
SalBow6G5171 Salvia bowleyana HOM05D003027 ORTHO05D003455 3.8e-35 154.5 587 32.2
AT2G40950 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 5.0e-35 154.1 694 29.3
MSTRG.26171 Avicennia marina HOM05D003027 ORTHO05D003455 5.0e-35 154.1 681 29.7
CAN.G569.64 Capsicum annuum HOM05D003027 ORTHO05D003455 6.5e-35 153.7 583 31.7
Eucgr.A02199 Eucalyptus grandis HOM05D003027 ORTHO05D003455 6.5e-35 153.7 818 30.0
Gorai.013G000800 Gossypium raimondii HOM05D003027 ORTHO05D003455 8.4e-35 153.3 639 31.8
CANSAT64G1028 Cannabis sativa HOM05D003027 ORTHO05D003455 1.1e-34 152.9 754 30.4
COL.COLO4_19389 Corchorus olitorius HOM05D003027 ORTHO05D003455 1.4e-34 152.5 664 31.8
Gohir.A13G001500 Gossypium hirsutum HOM05D003027 ORTHO05D003455 1.4e-34 152.5 591 32.0
Hma1.2p1_1246F.1_g270160 Hydrangea macrophylla HOM05D003027 ORTHO05D003455 1.9e-34 152.1 571 32.6
Lalb_Chr22g0357801 Lupinus albus HOM05D003027 ORTHO05D003455 1.9e-34 152.1 588 33.2
CARHR136060 Cardamine hirsuta HOM05D003027 ORTHO05D003455 3.2e-34 151.4 647 29.5
BcaC02g12863 Brassica carinata HOM05D003027 ORTHO05D003455 5.5e-34 150.6 572 31.5
HPP92_002082 Vanilla planifolia HOM05D003027 ORTHO05D003455 5.5e-34 150.6 591 29.8
C04p02350 Brassica napus HOM05D003027 ORTHO05D003455 9.3e-34 149.8 580 30.7
BolC4t21881H Brassica oleracea HOM05D003027 ORTHO05D003455 9.3e-34 149.8 580 30.7
Sabra16G0035700 Salix brachista HOM05D003027 ORTHO05D003455 9.3e-34 149.8 631 31.7
ClCG10G016460 Citrullus lanatus HOM05D003027 ORTHO05D003455 1.6e-33 149.1 785 30.6
HanXRQChr13g0388001 Helianthus annuus HOM05D003027 ORTHO05D003455 3.5e-33 147.9 605 30.1
EL10Ac3g07277 Beta vulgaris HOM05D003027 ORTHO05D003455 4.6e-33 147.5 786 29.4
Lalb_Chr14g0365581 Lupinus albus HOM05D003027 ORTHO05D003455 4.6e-33 147.5 858 28.8
ATR0307G054 Amborella trichopoda HOM05D003027 ORTHO05D003455 7.9e-33 146.7 601 31.1
SalBow1G6916 Salvia bowleyana HOM05D003027 ORTHO05D003455 7.9e-33 146.7 738 29.1
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 7.9e-33 146.7 836 28.3
BolC4t28375H Brassica oleracea HOM05D003027 ORTHO05D003455 1.8e-32 145.6 575 29.9
Sp5g05900 Schrenkiella parvula HOM05D003027 ORTHO05D003455 1.8e-32 145.6 579 30.9
C04p68700 Brassica napus HOM05D003027 ORTHO05D003455 2.3e-32 145.2 575 30.4
Glyma.03G123200 Glycine max HOM05D003027 ORTHO05D003455 2.3e-32 145.2 809 29.3
Aa31LG3G3720 Aethionema arabicum HOM05D003027 ORTHO05D003455 3.9e-32 144.4 610 28.2
vmacro08992 Vaccinium macrocarpon HOM05D003027 ORTHO05D003455 3.9e-32 144.4 734 29.4
RcHm_v2.0_Chr4g0433931 Rosa chinensis HOM05D003027 ORTHO05D003455 5.1e-32 144.1 718 29.9
SGA_v2.0_scaffold66G22290 Striga asiatica HOM05D003027 ORTHO05D003455 5.1e-32 144.1 592 32.3
Thhalv10005827m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 1.1e-31 142.9 565 30.4
CiPaw.10G042900 Carya illinoinensis HOM05D003027 ORTHO05D003455 1.5e-31 142.5 640 30.9
AT3G10800 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 1.9e-31 142.1 644 28.7
MSTRG.6308 Avicennia marina HOM05D003027 ORTHO05D003455 1.9e-31 142.1 625 30.2
Nitab4.5_0005963g0050 Nicotiana tabacum HOM05D003027 ORTHO05D003455 2.5e-31 141.7 709 29.2
Hund24551 Selenicereus undatus HOM05D003027 ORTHO05D003455 2.5e-31 141.7 727 29.8
AUR62018385 Chenopodium quinoa HOM05D003027 ORTHO05D003455 3.3e-31 141.4 639 30.8
AUR62030278 Chenopodium quinoa HOM05D003027 ORTHO05D003455 4.3e-31 141.0 678 29.4
Sopen10g028950 Solanum pennellii HOM05D003027 ORTHO05D003455 4.3e-31 141.0 725 29.7
BraA04t18587Z Brassica rapa HOM05D003027 ORTHO05D003455 7.4e-31 140.2 566 29.9
PGSC0003DMG400007175 Solanum tuberosum HOM05D003027 ORTHO05D003455 7.4e-31 140.2 778 29.3
Os07g0644100 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 1.6e-30 139.0 576 29.7
Duzib128G0339 Durio zibethinus HOM05D003027 ORTHO05D003455 2.2e-30 138.7 648 30.6
HanXRQChr03g0061511 Helianthus annuus HOM05D003027 ORTHO05D003455 2.8e-30 138.3 628 28.2
Gohir.D13G000900 Gossypium hirsutum HOM05D003027 ORTHO05D003455 3.7e-30 137.9 637 30.5
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 3.7e-30 137.9 890 27.5
Carub.0003s1003 Capsella rubella HOM05D003027 ORTHO05D003455 4.8e-30 137.5 586 28.2
Manes.08G062800 Manihot esculenta HOM05D003027 ORTHO05D003455 6.3e-30 137.1 642 29.4
Os05g0411300 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 6.3e-30 137.1 653 28.8
TWI74G0015 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 6.3e-30 137.1 766 29.5
CiPaw.09G050600 Carya illinoinensis HOM05D003027 ORTHO05D003455 8.2e-30 136.7 739 29.4
CDE08G0069 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 8.2e-30 136.7 652 29.0
Lalb_Chr24g0400521 Lupinus albus HOM05D003027 ORTHO05D003455 1.1e-29 136.3 786 29.5
Nitab4.5_0004697g0100 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.1e-29 136.3 590 30.5
Aa31LG10G11460 Aethionema arabicum HOM05D003027 ORTHO05D003455 1.8e-29 135.6 645 28.5
AL3G22300 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 1.8e-29 135.6 637 27.5
Lsat_1_v5_gn_5_157880 Lactuca sativa HOM05D003027 ORTHO05D003455 1.8e-29 135.6 639 30.0
MSTRG.19782 Avicennia marina HOM05D003027 ORTHO05D003455 2.4e-29 135.2 870 28.0
Zm00001eb110370 Zea mays HOM05D003027 ORTHO05D003455 2.4e-29 135.2 574 29.1
AT3G56660 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 3.1e-29 134.8 620 29.7
FAN12G2249 Fragaria x ananassa HOM05D003027 ORTHO05D003455 4.1e-29 134.4 568 30.8
FAN07G2582 Fragaria x ananassa HOM05D003027 ORTHO05D003455 5.3e-29 134.0 707 29.3
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 5.3e-29 134.0 844 28.1
FvH4_4g26350 Fragaria vesca HOM05D003027 ORTHO05D003455 6.9e-29 133.7 565 30.1
A04p31300 Brassica napus HOM05D003027 ORTHO05D003455 9.0e-29 133.3 566 29.7
CARHR166770 Cardamine hirsuta HOM05D003027 ORTHO05D003455 9.0e-29 133.3 602 29.1
THA.LOC104816495 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 2.0e-28 132.1 656 30.2
FAN12G3806 Fragaria x ananassa HOM05D003027 ORTHO05D003455 4.5e-28 131.0 567 30.3
unitig_21.g20679 Utricularia gibba HOM05D003027 ORTHO05D003455 4.5e-28 131.0 781 28.4
Sed0011831 Sechium edule HOM05D003027 ORTHO05D003455 5.9e-28 130.6 784 28.8
unitig_744.g24169 Utricularia gibba HOM05D003027 ORTHO05D003455 5.9e-28 130.6 700 28.4
Oeu022988.1 Olea europaea HOM05D003027 ORTHO05D003455 1.0e-27 129.8 611 30.0
BcaC02g12742 Brassica carinata HOM05D003027 ORTHO05D003455 1.3e-27 129.4 591 28.6
SGA_v2.0_scaffold106G30539 Striga asiatica HOM05D003027 ORTHO05D003455 1.3e-27 129.4 669 28.7
AL5G38030 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 2.2e-27 128.6 639 27.9
FAN22G1384 Fragaria x ananassa HOM05D003027 ORTHO05D003455 2.9e-27 128.3 705 28.7
C04p35840 Brassica napus HOM05D003027 ORTHO05D003455 6.5e-27 127.1 581 27.5
BolC1t05352H Brassica oleracea HOM05D003027 ORTHO05D003455 6.5e-27 127.1 639 27.5
BolC4t25216H Brassica oleracea HOM05D003027 ORTHO05D003455 6.5e-27 127.1 581 27.5
CDE08G1650 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 6.5e-27 127.1 691 28.9
Ca_08358_v3 Cicer arietinum L. HOM05D003027 ORTHO05D003455 6.5e-27 127.1 613 30.5
Thhalv10020207m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 8.5e-27 126.7 706 27.3
BcaC02g09858 Brassica carinata HOM05D003027 ORTHO05D003455 1.1e-26 126.3 573 28.1
Nitab4.5_0000123g0440 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.4e-26 125.9 618 29.0
Sed0023009 Sechium edule HOM05D003027 ORTHO05D003455 1.9e-26 125.6 715 29.5
Sp3g09120 Schrenkiella parvula HOM05D003027 ORTHO05D003455 3.2e-26 124.8 704 27.8
PGSC0003DMG400039820 Solanum tuberosum HOM05D003027 ORTHO05D003455 3.2e-26 124.8 617 28.4
Carub.0005s2341 Capsella rubella HOM05D003027 ORTHO05D003455 4.2e-26 124.4 626 28.6
FAN17G2150 Fragaria x ananassa HOM05D003027 ORTHO05D003455 5.5e-26 124.0 679 28.4
Peaxi162Scf00003g05235 Petunia axillaris HOM05D003027 ORTHO05D003455 5.5e-26 124.0 615 28.1
Zm00001eb288060 Zea mays HOM05D003027 ORTHO05D003455 5.5e-26 124.0 700 27.6
Lj2A408G49 Lonicera japonica HOM05D003027 ORTHO05D003455 2.1e-25 122.1 729 29.1
BraA09t38974Z Brassica rapa HOM05D003027 ORTHO05D003455 6.1e-25 120.6 617 27.6
HPP92_002076 Vanilla planifolia HOM05D003027 ORTHO05D003455 6.1e-25 120.6 570 28.8
Manes.09G000300 Manihot esculenta HOM05D003027 ORTHO05D003455 1.0e-24 119.8 731 28.6
A09p34290 Brassica napus HOM05D003027 ORTHO05D003455 1.4e-24 119.4 630 27.6
Sopen04g025360 Solanum pennellii HOM05D003027 ORTHO05D003455 3.9e-24 117.9 570 29.5
Duzib106G1517 Durio zibethinus HOM05D003027 ORTHO05D003455 8.2e-22 110.2 812 27.8
TAR636G3275 Trochodendron aralioides HOM05D003027 ORTHO05D003455 8.2e-22 110.2 375 33.6
Cpa.g.sc92.68 Carica papaya HOM05D003027 ORTHO05D003455 1.4e-21 109.4 703 27.3
CARHR085360 Cardamine hirsuta HOM05D003027 ORTHO05D003455 2.0e-20 105.5 786 25.6
CBR_g40793 Chara braunii HOM05D003027 ORTHO05D003455 2.2e-19 102.1 618 27.8
Psat0s1940g0120 Pisum sativum HOM05D003027 ORTHO05D003455 5.0e-19 100.9 624 29.8
BcaB02g08358 Brassica carinata HOM05D003027 ORTHO05D003455 6.5e-19 100.5 570 26.0
Sc19g0007990 Simmondsia chinensis HOM05D003027 ORTHO05D003455 4.2e-18 97.8 161 42.2
BraA01t04221Z Brassica rapa HOM05D003027 ORTHO05D003455 1.2e-17 96.3 706 26.1
BraA04t16091Z Brassica rapa HOM05D003027 ORTHO05D003455 1.8e-16 92.4 590 26.8
BcaC02g12870 Brassica carinata HOM05D003027 ORTHO05D003455 2.0e-15 89.0 315 32.4
A04p03460 Brassica napus HOM05D003027 ORTHO05D003455 2.8e-14 85.1 590 25.8
Sopen04g025410 Solanum pennellii HOM05D003027 ORTHO05D003455 1.4e-13 82.8 629 26.6
BcaB04g21174 Brassica carinata HOM05D003027 ORTHO05D003455 1.0e-11 76.6 162 35.8
BcaB04g21175 Brassica carinata HOM05D003027 ORTHO05D003455 3.8e-11 74.7 403 25.3
Dinv20756 Davidia involucrata HOM05D003027 ORTHO05D003455 3.8e-11 74.7 171 36.3
Solyc04g056460.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 5.0e-11 74.3 483 27.5
Dinv20757 Davidia involucrata HOM05D003027 ORTHO05D003455 3.2e-10 71.6 168 38.1
SMO200G0032 Selaginella moellendorffii HOM05D003027 ORTHO05D003455 4.2e-10 71.2 56 66.1
PGSC0003DMG400044159 Solanum tuberosum HOM05D003027 ORTHO05D003455 6.1e-09 67.4 386 27.5
Solyc04g056490.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 1.0e-08 66.6 166 34.9
Nn7g36946 Nelumbo nucifera HOM05D003027 ORTHO05D003455 3.3e-07 61.6 249 27.3
PGSC0003DMG400034669 Solanum tuberosum HOM05D003027 ORTHO05D003455 4.4e-07 61.2 290 27.9
BcaC04g21686 Brassica carinata HOM05D003027 ORTHO05D003455 9.7e-07 60.1 98 41.8
Solyc08g074860.1 Solanum lycopersicum HOM05D002256 ORTHO05D003455 1.7e-06 59.3 117 40.2
Sopen08g023460 Solanum pennellii HOM05D002256 ORTHO05D003455 8.2e-06 57.0 115 40.0


User provided reference genes

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