Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 5.5e-54 214.2 117 100.0
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 5.6e-22 107.8 106 55.7
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.8e-20 102.8 88 56.8
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.1e-20 102.1 88 58.0
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 4.0e-20 101.7 79 60.8
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 5.2e-20 101.3 77 63.6
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 6.8e-20 100.9 94 54.3
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 6.8e-20 100.9 90 60.0
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 8.9e-20 100.5 80 61.2
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 8.9e-20 100.5 95 53.7
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 8.9e-20 100.5 94 55.3
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.2e-19 100.1 79 58.2
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.5e-19 99.8 88 56.8
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 2.0e-19 99.4 86 59.3
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.6e-19 99.0 98 54.1
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 2.6e-19 99.0 80 60.0
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 2.6e-19 99.0 80 60.0
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 2.6e-19 99.0 79 60.8
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 3.4e-19 98.6 79 62.0
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 4.4e-19 98.2 87 56.3
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.8e-19 97.8 88 56.8
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 5.8e-19 97.8 79 62.0
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 9.8e-19 97.1 81 60.5
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 9.8e-19 97.1 80 60.0
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 9.8e-19 97.1 99 52.5
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 1.3e-18 96.7 79 59.5
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.3e-18 96.7 84 58.3
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.7e-18 96.3 78 64.1
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.7e-18 96.3 79 62.0
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.7e-18 96.3 79 62.0
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 1.7e-18 96.3 80 60.0
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.7e-18 96.3 88 56.8
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 1.7e-18 96.3 85 58.8
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.2e-18 95.9 80 58.8
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 2.2e-18 95.9 79 59.5
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 2.2e-18 95.9 80 58.8
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 2.9e-18 95.5 80 57.5
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.9e-18 95.5 79 59.5
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 2.9e-18 95.5 80 58.8
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 3.7e-18 95.1 83 55.4
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 3.7e-18 95.1 80 58.8
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 4.9e-18 94.7 79 60.8
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 4.9e-18 94.7 80 58.8
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 4.9e-18 94.7 79 60.8
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.9e-18 94.7 86 59.3
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.9e-18 94.7 83 57.8
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 6.4e-18 94.4 78 61.5
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 6.4e-18 94.4 79 58.2
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 6.4e-18 94.4 88 55.7
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 6.4e-18 94.4 79 60.8
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 8.3e-18 94.0 83 55.4
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 8.3e-18 94.0 83 55.4
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 8.3e-18 94.0 81 56.8
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 1.1e-17 93.6 79 58.2
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 1.4e-17 93.2 107 50.5
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 1.4e-17 93.2 78 60.3
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 1.4e-17 93.2 79 58.2
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 1.4e-17 93.2 79 58.2
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.9e-17 92.8 97 47.4
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 1.9e-17 92.8 79 59.5
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 1.9e-17 92.8 79 59.5
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 1.9e-17 92.8 79 57.0
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 1.9e-17 92.8 91 53.8
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.9e-17 92.8 79 57.0
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.4e-17 92.4 77 59.7
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 2.4e-17 92.4 78 56.4
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 2.4e-17 92.4 77 59.7
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 2.4e-17 92.4 79 57.0
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.4e-17 92.4 79 58.2
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 3.2e-17 92.0 79 55.7
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.2e-17 92.0 82 59.8
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 4.1e-17 91.7 78 61.5
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 4.1e-17 91.7 78 61.5
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 4.1e-17 91.7 78 59.0
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 4.1e-17 91.7 74 63.5
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 5.4e-17 91.3 79 59.5
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 5.4e-17 91.3 79 59.5
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 5.4e-17 91.3 79 57.0
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 5.4e-17 91.3 79 59.5
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 7.0e-17 90.9 76 57.9
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 7.0e-17 90.9 79 58.2
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 9.2e-17 90.5 107 50.5
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 9.2e-17 90.5 75 62.7
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 9.2e-17 90.5 77 57.1
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.2e-16 90.1 78 57.7
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 1.2e-16 90.1 74 60.8
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 1.2e-16 90.1 74 59.5
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 1.2e-16 90.1 79 57.0
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 1.6e-16 89.7 104 48.1
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 2.1e-16 89.4 77 58.4
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 2.1e-16 89.4 107 50.5
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 2.1e-16 89.4 107 50.5
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 2.1e-16 89.4 107 50.5
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.1e-16 89.4 79 57.0
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 2.1e-16 89.4 81 58.0
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 2.1e-16 89.4 87 52.9
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.1e-16 89.4 73 63.0
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 2.1e-16 89.4 73 61.6
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.7e-16 89.0 107 50.5
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 3.5e-16 88.6 79 55.7
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 3.5e-16 88.6 79 55.7
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 4.6e-16 88.2 79 54.4
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 4.6e-16 88.2 79 55.7
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 7.8e-16 87.4 90 52.2
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 1.0e-15 87.0 86 51.2
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 1.0e-15 87.0 78 55.1
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.3e-15 86.7 74 60.8
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 1.3e-15 86.7 79 53.2
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-15 86.7 79 53.2
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-15 86.7 79 53.2
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-15 86.7 79 53.2
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.3e-15 86.7 75 58.7
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.3e-15 86.7 79 55.7
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.3e-15 86.7 79 55.7
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.3e-15 85.9 79 53.2
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.3e-15 85.9 70 62.9
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 3.0e-15 85.5 74 58.1
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 5.1e-15 84.7 79 53.2
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 5.1e-15 84.7 79 53.2
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 5.1e-15 84.7 79 53.2
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 6.6e-15 84.3 78 55.1
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 6.6e-15 84.3 80 53.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.1e-14 83.6 73 57.5
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.1e-14 83.6 77 57.1
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.5e-14 83.2 79 50.6
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 1.9e-14 82.8 80 57.5
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 3.3e-14 82.0 78 53.8
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.3e-14 82.0 73 60.3
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 5.6e-14 81.3 74 56.8
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 1.6e-13 79.7 79 53.2
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.8e-13 79.0 77 54.5
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 6.2e-13 77.8 74 58.1
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.1e-12 77.0 73 53.4
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 1.8e-12 76.3 78 48.7
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 1.8e-12 76.3 78 48.7
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 1.8e-12 76.3 78 48.7
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 7.5e-11 70.9 73 50.7
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.7e-10 68.6 54 59.3
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.7e-10 68.6 54 59.3
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 9.2e-09 63.9 51 56.9
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 1.1e-06 57.0 53 52.8
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 5.6e-06 54.7 79 44.3


User provided reference genes

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