Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 2.8e-277 958.0 478 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 5.5e-177 624.8 412 73.8
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 2.0e-174 616.3 380 75.0
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.3e-173 613.6 380 74.5
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 2.2e-173 612.8 405 71.1
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 3.7e-173 612.1 405 72.1
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.7e-173 612.1 405 71.1
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 4.9e-173 611.7 380 74.2
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 6.3e-173 611.3 380 74.7
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.1e-172 610.5 380 73.9
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.8e-172 609.8 405 71.4
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.8e-172 609.8 380 73.9
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 3.1e-172 609.0 380 73.9
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 5.4e-172 608.2 393 72.5
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 1.2e-171 607.1 405 70.4
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.2e-171 607.1 380 73.9
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.2e-171 607.1 412 70.4
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 1.2e-171 607.1 399 72.2
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 1.2e-171 607.1 405 70.6
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.6e-171 606.7 380 74.5
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 2.7e-171 605.9 405 70.9
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.7e-171 605.9 380 73.9
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 4.5e-171 605.1 380 73.4
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 4.5e-171 605.1 405 70.6
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.5e-171 605.1 380 74.5
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 5.9e-171 604.7 380 73.9
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 5.9e-171 604.7 380 73.9
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 5.9e-171 604.7 405 70.4
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 5.9e-171 604.7 405 70.1
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 5.9e-171 604.7 392 73.0
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 7.7e-171 604.4 380 73.9
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 7.7e-171 604.4 382 73.6
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 7.7e-171 604.4 379 74.1
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.0e-170 604.0 392 71.4
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 1.0e-170 604.0 392 73.5
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.3e-170 603.6 405 70.1
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.3e-170 603.6 414 70.0
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 1.7e-170 603.2 379 73.9
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.7e-170 603.2 380 73.4
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.7e-170 603.2 405 69.9
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 2.3e-170 602.8 382 73.3
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 2.3e-170 602.8 382 73.0
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 2.3e-170 602.8 405 70.6
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 2.3e-170 602.8 393 72.8
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 2.3e-170 602.8 380 72.9
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 2.9e-170 602.4 390 72.1
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 2.9e-170 602.4 405 70.4
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.9e-170 602.4 382 73.6
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.9e-170 602.4 392 72.7
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 3.8e-170 602.1 382 73.3
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 3.8e-170 602.1 399 71.4
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 3.8e-170 602.1 393 71.5
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 5.0e-170 601.7 380 74.2
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 5.0e-170 601.7 380 72.9
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 5.0e-170 601.7 393 71.5
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 6.6e-170 601.3 380 73.9
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 6.6e-170 601.3 405 70.4
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 6.6e-170 601.3 405 70.4
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 8.6e-170 600.9 380 73.2
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 8.6e-170 600.9 379 73.1
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 8.6e-170 600.9 380 73.2
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 1.1e-169 600.5 382 73.6
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.5e-169 600.1 381 73.2
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.9e-169 599.7 405 70.6
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.9e-169 599.7 380 72.9
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.9e-169 599.7 380 72.6
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.9e-169 599.7 381 73.2
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.5e-169 599.4 380 73.2
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 2.5e-169 599.4 379 73.1
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.5e-169 599.4 430 68.1
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 3.3e-169 599.0 379 73.1
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 3.3e-169 599.0 405 70.6
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 3.3e-169 599.0 405 69.6
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 4.3e-169 598.6 380 72.4
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 4.3e-169 598.6 405 69.9
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 5.6e-169 598.2 380 72.6
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 5.6e-169 598.2 416 69.2
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 5.6e-169 598.2 399 70.7
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 5.6e-169 598.2 379 72.6
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 5.6e-169 598.2 382 72.8
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 9.5e-169 597.4 393 71.8
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 9.5e-169 597.4 382 73.0
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 1.2e-168 597.0 382 72.8
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.6e-168 596.7 382 73.0
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.6e-168 596.7 411 69.6
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 2.1e-168 596.3 382 72.5
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 2.1e-168 596.3 393 71.5
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.1e-168 596.3 393 71.2
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.1e-168 596.3 405 70.1
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 2.1e-168 596.3 380 72.4
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 2.8e-168 595.9 382 72.8
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 2.8e-168 595.9 382 72.8
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 2.8e-168 595.9 382 72.8
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.8e-168 595.9 382 72.8
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.6e-168 595.5 405 69.4
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 3.6e-168 595.5 408 69.9
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 4.7e-168 595.1 405 69.9
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 6.1e-168 594.7 380 72.4
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 8.0e-168 594.3 393 70.7
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 1.0e-167 594.0 405 68.6
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.0e-167 594.0 405 69.1
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.0e-167 594.0 401 70.6
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 1.8e-167 593.2 405 68.9
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 3.0e-167 592.4 380 71.8
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 3.0e-167 592.4 432 66.2
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.0e-167 592.0 405 68.9
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 4.0e-167 592.0 380 71.8
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 6.8e-167 591.3 408 69.6
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.5e-166 590.1 415 68.7
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 2.0e-166 589.7 393 70.2
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.6e-166 589.3 380 71.8
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 5.7e-166 588.2 419 67.3
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 3.7e-165 585.5 373 72.4
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 8.3e-165 584.3 391 70.3
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.1e-164 583.9 422 66.1
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 5.4e-164 581.6 425 66.1
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 6.6e-162 574.7 399 68.9
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 1.5e-161 573.5 371 70.6
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 3.3e-161 572.4 449 62.8
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 5.6e-161 571.6 442 62.2
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 9.5e-161 570.9 353 74.8
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 2.8e-160 569.3 355 73.8
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 4.7e-160 568.5 360 73.1
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 4.7e-160 568.5 355 73.2
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 1.0e-159 567.4 390 69.2
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 1.2e-158 563.9 359 72.7
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 9.8e-158 560.8 355 73.2
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 1.4e-156 557.0 393 67.9
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 5.4e-156 555.1 491 56.8
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.4e-143 513.8 396 63.4
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 3.1e-143 512.7 405 62.2
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.0e-135 485.7 298 76.2
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.1e-127 461.1 337 65.0
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 1.1e-124 451.1 412 58.3
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 2.1e-120 436.8 444 53.4
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 3.6e-120 436.0 387 57.1
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 6.2e-120 435.3 367 59.7
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.9e-117 425.6 309 66.3
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.8e-112 409.8 244 77.5
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 4.6e-99 365.9 231 72.3
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.0e-90 338.2 212 73.6
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.5e-86 324.3 201 73.1
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 7.4e-81 305.4 407 43.5
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 8.2e-80 302.0 193 72.5
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.1e-79 301.6 272 57.7
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 1.4e-74 284.6 397 44.1
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 6.5e-69 265.8 180 71.7
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 3.8e-53 213.4 179 55.3
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.3e-48 198.4 142 64.1
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 2.2e-48 197.6 141 64.5
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 9.5e-44 182.2 136 62.5
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.1e-39 168.7 101 78.2
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.8e-18 98.2 97 52.6
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 2.1e-14 84.7 64 59.4
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 1.1e-07 62.4 318 22.3


User provided reference genes

Program Settings