Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 1.6e-288 995.3 487 100.0
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 3.0e-194 682.2 435 73.1
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 6.6e-194 681.0 435 73.1
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 4.6e-187 658.3 427 70.7
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 1.5e-185 653.3 411 72.5
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 3.7e-160 568.9 477 57.9
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.6e-158 562.8 464 61.0
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 6.5e-157 558.1 415 64.8
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 2.5e-156 556.2 429 63.9
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 2.5e-156 556.2 436 63.5
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 4.2e-156 555.4 433 63.5
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 7.2e-156 554.7 436 63.3
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 9.4e-156 554.3 427 64.2
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 1.2e-155 553.9 433 63.5
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 1.2e-155 553.9 418 63.9
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 1.2e-155 553.9 418 63.9
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.2e-155 553.9 431 63.6
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 2.7e-155 552.7 427 64.2
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 2.7e-155 552.7 429 62.9
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 6.1e-155 551.6 422 64.9
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 6.7e-154 548.1 424 63.2
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 8.8e-154 547.7 424 63.9
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 1.1e-153 547.4 433 62.8
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 2.0e-153 546.6 452 60.0
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 2.0e-153 546.6 446 61.0
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 2.6e-153 546.2 418 63.4
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.6e-153 546.2 430 63.5
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.6e-153 546.2 430 63.5
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 3.3e-153 545.8 435 62.5
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 5.7e-153 545.0 436 62.2
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 7.4e-153 544.7 425 63.3
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 9.7e-153 544.3 437 62.0
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 1.7e-152 543.5 423 63.6
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.7e-152 543.5 419 63.2
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.8e-152 542.7 428 62.1
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 2.8e-152 542.7 425 63.1
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 4.8e-152 542.0 428 62.1
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 4.8e-152 542.0 429 62.7
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 6.3e-152 541.6 425 61.9
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 6.3e-152 541.6 437 61.3
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 8.2e-152 541.2 443 60.0
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 8.2e-152 541.2 418 62.9
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 8.2e-152 541.2 431 62.2
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 1.8e-151 540.0 422 62.8
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 1.8e-151 540.0 430 62.3
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 3.1e-151 539.3 423 61.7
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 4.1e-151 538.9 425 62.1
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 4.1e-151 538.9 424 63.9
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 6.9e-151 538.1 422 62.8
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 9.1e-151 537.7 429 62.7
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 1.2e-150 537.3 430 62.3
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.2e-150 537.3 430 62.1
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.5e-150 537.0 429 62.5
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.4e-150 535.8 431 61.5
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 3.4e-150 535.8 417 62.6
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 4.5e-150 535.4 416 63.2
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 4.5e-150 535.4 445 60.7
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 4.5e-150 535.4 438 61.4
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 4.5e-150 535.4 417 62.1
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 5.9e-150 535.0 432 62.5
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 7.7e-150 534.6 417 62.8
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 7.7e-150 534.6 420 62.6
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 7.7e-150 534.6 453 58.9
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 7.7e-150 534.6 480 58.8
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 1.0e-149 534.3 448 58.9
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 1.3e-149 533.9 430 60.9
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.3e-149 533.9 431 61.9
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.7e-149 533.5 431 61.3
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 2.9e-149 532.7 419 62.8
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 2.9e-149 532.7 423 62.2
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 3.8e-149 532.3 425 61.2
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 3.8e-149 532.3 430 61.4
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 5.0e-149 531.9 417 62.6
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 6.5e-149 531.6 429 62.0
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 6.5e-149 531.6 425 62.1
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.9e-148 530.0 430 61.2
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 2.5e-148 529.6 446 59.2
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 2.5e-148 529.6 429 61.8
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 3.2e-148 529.3 441 59.9
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 4.2e-148 528.9 425 63.1
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 4.2e-148 528.9 429 60.8
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 5.5e-148 528.5 427 60.2
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 5.5e-148 528.5 429 60.8
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 7.2e-148 528.1 426 60.6
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 9.4e-148 527.7 462 55.6
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 9.4e-148 527.7 445 58.2
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.2e-147 527.3 423 61.2
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 2.1e-147 526.6 443 60.3
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 4.7e-147 525.4 445 58.7
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 7.9e-147 524.6 420 61.7
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 1.0e-146 524.2 426 61.5
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 1.4e-146 523.9 420 61.4
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.8e-146 523.5 430 59.5
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 5.2e-146 521.9 416 61.1
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 5.2e-146 521.9 421 60.3
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 6.7e-146 521.5 460 55.4
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 6.7e-146 521.5 443 59.8
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.1e-145 520.8 439 59.5
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 2.0e-145 520.0 438 59.4
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.6e-145 519.6 453 57.4
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 1.3e-144 517.3 427 59.7
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 2.2e-144 516.5 420 61.2
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 3.7e-144 515.8 419 60.4
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 4.8e-144 515.4 446 55.6
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 6.3e-144 515.0 433 60.0
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 6.3e-144 515.0 419 59.7
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 1.4e-143 513.8 427 60.2
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 1.8e-143 513.5 427 60.7
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 2.4e-143 513.1 415 61.7
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 1.1e-140 504.2 421 59.4
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 9.4e-140 501.1 445 58.0
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 9.4e-140 501.1 426 58.9
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 8.0e-139 498.0 429 57.3
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.4e-138 497.3 393 62.8
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 2.6e-137 493.0 431 58.0
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 4.4e-137 492.3 420 58.6
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 2.2e-136 490.0 407 60.0
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.2e-136 490.0 418 57.7
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 1.2e-134 484.2 429 57.8
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 8.0e-131 471.5 389 61.4
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 1.8e-130 470.3 421 57.2
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 2.3e-130 469.9 419 56.3
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 5.2e-130 468.8 463 52.1
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.4e-127 459.9 420 56.7
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 4.1e-127 459.1 376 61.2
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 7.0e-127 458.4 379 59.4
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 2.9e-125 453.0 417 54.7
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 3.8e-125 452.6 426 53.3
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 2.1e-123 446.8 424 54.0
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 5.2e-122 442.2 426 51.6
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 8.8e-122 441.4 372 59.7
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 1.5e-121 440.7 407 55.3
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 6.3e-120 435.3 443 51.2
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 8.3e-120 434.9 425 51.5
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 3.5e-118 429.5 420 50.5
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 6.6e-117 425.2 426 53.1
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 9.5e-108 394.8 429 50.8
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 2.1e-107 393.7 368 53.8
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 4.1e-103 379.4 413 47.9
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 8.6e-101 371.7 336 57.7
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 3.3e-100 369.8 412 48.8
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 8.1e-99 365.2 270 63.0
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 8.9e-98 361.7 343 55.1
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 4.6e-94 349.4 374 48.9
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.8e-91 340.1 311 57.6
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 6.8e-90 335.5 217 71.0
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 2.2e-88 330.5 220 67.3
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 6.6e-85 318.9 368 48.6
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 1.8e-82 310.8 381 48.6
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 1.3e-77 294.7 372 45.2
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 1.6e-75 287.7 368 46.5
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 1.7e-72 277.7 164 76.2
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.4e-66 258.1 294 47.3
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 2.6e-57 227.3 245 52.2
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.8e-57 226.1 203 51.2
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.8e-57 226.1 203 51.2
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 1.7e-56 224.6 249 51.8
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.1e-55 221.9 198 52.0
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.1e-55 221.9 198 52.0
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.1e-55 221.9 198 52.0
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 6.3e-43 179.5 104 76.9
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 3.1e-42 177.2 105 73.3
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.9e-39 167.9 202 46.5
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.9e-39 167.9 202 46.5
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.9e-39 167.9 202 46.5
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 4.5e-33 146.7 89 71.9
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 5.0e-32 143.3 89 69.7
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 2.8e-27 127.5 104 57.7
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 4.8e-27 126.7 76 73.7
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 6.3e-27 126.3 162 46.3
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 4.1e-26 123.6 109 56.9
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.5e-25 120.6 117 50.4
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 2.9e-24 117.5 103 57.3
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 4.7e-22 110.2 145 44.8
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 5.7e-20 103.2 109 48.6
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.4e-18 98.6 66 63.6
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.2e-17 95.5 68 61.8
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.3e-16 92.0 52 78.8
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 1.7e-16 91.7 52 76.9
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.4e-10 72.0 141 37.6
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 1.3e-08 65.5 90 42.2
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 1.3e-08 65.5 38 76.3
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 2.3e-08 64.7 44 63.6
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 2.5e-07 61.2 65 49.2
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 2.8e-06 57.8 38 60.5
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 3.6e-06 57.4 61 45.9
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 8.0e-06 56.2 63 42.9


User provided reference genes

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