Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 0.0e+00 1197.6 728 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.7e-137 494.2 498 54.0
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 1.9e-136 490.7 470 57.4
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 2.7e-135 486.9 574 50.9
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 2.8e-119 433.7 424 55.7
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 5.8e-117 426.0 453 53.0
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 7.5e-117 425.6 429 54.1
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 3.7e-116 423.3 403 55.6
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 6.4e-116 422.5 397 56.9
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 4.1e-115 419.9 489 50.5
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.2e-114 418.3 423 53.9
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.6e-114 416.4 381 57.7
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 4.6e-114 416.4 455 51.6
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.7e-113 414.5 422 52.1
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.7e-113 414.5 425 53.6
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 2.3e-113 414.1 420 53.6
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 8.6e-113 412.1 425 53.6
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 1.1e-112 411.8 423 52.0
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.5e-112 411.4 423 53.9
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.5e-112 411.4 493 49.3
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 2.5e-112 410.6 421 54.2
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 5.6e-112 409.5 434 53.0
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.6e-111 407.9 423 53.7
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 2.1e-111 407.5 427 52.0
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 2.1e-111 407.5 418 53.6
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 4.7e-111 406.4 490 48.8
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 4.7e-111 406.4 425 52.9
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.8e-110 404.4 376 56.4
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 3.1e-110 403.7 489 49.1
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 3.1e-110 403.7 385 56.1
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 4.0e-110 403.3 425 52.7
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 4.0e-110 403.3 425 52.7
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 3.4e-109 400.2 492 48.0
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 3.4e-109 400.2 575 42.4
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.7e-108 397.9 418 52.9
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 3.7e-108 396.7 497 48.1
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 4.9e-108 396.4 379 54.9
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 4.9e-108 396.4 457 50.1
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 6.4e-108 396.0 478 48.7
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 6.4e-108 396.0 429 51.0
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 8.3e-108 395.6 482 47.7
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 8.3e-108 395.6 445 50.8
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.1e-107 395.2 451 49.7
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 1.4e-107 394.8 421 52.0
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.4e-107 394.0 428 51.2
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 3.2e-107 393.7 426 51.4
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 3.2e-107 393.7 408 51.5
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.1e-107 393.3 416 52.6
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 4.1e-107 393.3 433 50.8
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 5.4e-107 392.9 416 52.4
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 1.2e-106 391.7 490 48.6
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 2.0e-106 391.0 478 50.2
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 2.0e-106 391.0 363 55.4
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.7e-106 390.6 478 50.2
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 2.7e-106 390.6 468 47.0
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 4.6e-106 389.8 487 47.8
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.6e-106 389.8 336 59.2
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 6.0e-106 389.4 487 47.8
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 7.8e-106 389.0 447 49.2
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.3e-105 388.3 367 54.2
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 2.3e-105 387.5 429 49.4
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 3.0e-105 387.1 385 54.3
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.9e-105 386.7 381 55.4
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 1.5e-104 384.8 408 52.2
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.9e-104 384.4 448 51.6
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 2.5e-104 384.0 438 51.6
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.5e-104 384.0 450 50.9
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 3.3e-104 383.6 447 48.1
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 7.3e-104 382.5 449 50.8
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 9.5e-104 382.1 488 48.6
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.6e-103 381.3 408 51.7
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 2.8e-103 380.6 423 50.8
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 3.6e-103 380.2 418 51.0
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 3.6e-103 380.2 510 45.3
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 4.7e-103 379.8 461 45.8
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 6.2e-103 379.4 434 48.8
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 8.1e-103 379.0 493 48.1
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 8.1e-103 379.0 359 56.5
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 2.3e-102 377.5 490 45.9
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 4.0e-102 376.7 516 45.3
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 4.0e-102 376.7 368 53.0
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 4.0e-102 376.7 487 48.7
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 5.2e-102 376.3 542 43.2
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.2e-101 375.2 433 47.1
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.6e-101 374.0 494 45.3
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 2.6e-101 374.0 431 49.4
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 2.6e-101 374.0 489 45.4
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 1.3e-100 371.7 464 46.3
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 1.7e-100 371.3 433 46.9
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 6.4e-100 369.4 486 44.9
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 6.4e-100 369.4 490 44.9
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 3.2e-99 367.1 414 48.8
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 4.6e-98 363.2 389 52.2
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 6.0e-98 362.8 489 45.0
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 1.7e-97 361.3 460 44.8
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.7e-97 361.3 506 43.1
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 2.3e-97 360.9 456 46.5
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 3.0e-97 360.5 490 46.3
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 3.9e-97 360.1 430 47.0
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 3.9e-97 360.1 496 44.6
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 8.6e-97 359.0 414 47.8
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 9.5e-96 355.5 425 49.2
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 3.1e-94 350.5 492 43.5
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 4.0e-94 350.1 450 44.4
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 4.0e-94 350.1 422 45.7
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 6.8e-94 349.4 503 43.5
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.2e-93 348.6 429 48.0
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 7.6e-93 345.9 433 46.4
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 1.1e-91 342.0 318 56.3
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.4e-91 341.7 467 43.3
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 3.9e-89 333.6 447 43.8
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 3.3e-88 330.5 441 44.2
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 3.6e-87 327.0 484 43.0
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 8.1e-87 325.9 358 51.1
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 6.4e-84 316.2 465 42.8
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.8e-79 300.8 404 47.3
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.7e-76 291.6 453 40.4
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 9.3e-75 285.8 307 50.5
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 1.9e-72 278.1 358 44.1
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.7e-68 265.0 284 50.7
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.1e-64 252.3 291 50.9
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.7e-63 247.3 226 57.1
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.8e-60 237.3 360 40.6
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 9.0e-54 216.1 426 38.0
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 9.4e-51 206.1 178 58.4
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 1.4e-49 202.2 413 35.4
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 5.3e-46 190.3 160 60.6
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 5.5e-43 180.3 256 43.8
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 3.3e-32 144.4 218 41.7
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 7.0e-30 136.7 480 26.7
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.6e-29 134.8 130 51.5
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 1.6e-26 125.6 203 38.4
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 8.0e-26 123.2 144 50.0
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 9.1e-22 109.8 526 24.5
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 2.7e-21 108.2 113 46.0
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 2.5e-19 101.7 248 33.5
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 1.6e-18 99.0 95 54.7
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 7.5e-16 90.1 124 42.7
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 2.2e-15 88.6 124 41.9
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 3.5e-13 81.3 92 48.9
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 2.8e-10 71.6 124 37.1
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 9.2e-06 56.6 47 61.7


User provided reference genes

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