Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.6e-208 729.2 370 100.0
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.2e-104 383.3 352 57.1
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 3.7e-104 382.5 351 57.0
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.2e-102 377.5 353 56.4
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 7.7e-102 374.8 345 57.1
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 7.7e-102 374.8 344 56.4
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 7.7e-102 374.8 353 56.7
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.9e-101 372.9 358 55.6
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.9e-100 370.2 351 56.1
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.9e-100 370.2 351 55.6
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.5e-100 369.8 351 55.8
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 9.4e-100 367.9 346 56.1
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 2.1e-99 366.7 343 57.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.7e-99 366.3 354 54.8
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.7e-99 366.3 353 56.4
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 6.1e-99 365.2 344 55.5
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 6.1e-99 365.2 351 55.0
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 8.0e-99 364.8 346 54.6
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 8.0e-99 364.8 350 56.0
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.0e-98 364.4 352 55.4
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.0e-98 364.4 359 55.2
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.0e-98 364.4 353 56.1
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.0e-98 364.4 353 56.1
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.4e-98 364.0 324 57.7
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.4e-98 364.0 353 54.1
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.4e-98 364.0 345 54.8
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.4e-98 364.0 351 54.1
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.8e-98 363.6 344 56.1
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.8e-98 363.6 353 55.2
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.3e-98 363.2 348 55.2
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.0e-98 362.8 351 55.3
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.0e-98 362.8 350 54.9
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 3.0e-98 362.8 350 55.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 6.8e-98 361.7 346 54.6
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 6.8e-98 361.7 345 54.5
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.8e-98 361.3 343 55.7
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 8.8e-98 361.3 351 55.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 8.8e-98 361.3 351 55.3
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.2e-97 360.9 353 54.1
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.5e-97 360.5 350 55.1
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 2.0e-97 360.1 351 55.0
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.4e-97 359.4 406 49.8
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.4e-97 359.4 345 53.9
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.4e-97 359.0 344 56.1
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 4.4e-97 359.0 351 54.7
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 4.4e-97 359.0 351 55.6
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 5.7e-97 358.6 348 54.6
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 7.5e-97 358.2 344 56.1
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 7.5e-97 358.2 345 55.4
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.7e-96 357.1 355 53.8
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.7e-96 357.1 352 54.8
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.9e-96 355.5 353 53.8
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 6.3e-96 355.1 350 53.7
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 8.3e-96 354.8 354 54.2
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.1e-95 354.4 373 51.7
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.1e-95 354.4 336 54.5
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.8e-95 353.6 352 54.5
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.4e-95 353.2 317 58.0
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 2.4e-95 353.2 348 53.7
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 5.4e-95 352.1 323 56.0
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 5.4e-95 352.1 351 54.1
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.4e-95 352.1 321 56.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 5.4e-95 352.1 347 53.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.6e-94 350.5 331 54.7
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.0e-94 350.1 324 56.8
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.7e-94 349.7 352 53.7
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.7e-94 349.7 332 54.8
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.5e-94 349.4 325 56.3
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 3.5e-94 349.4 320 56.9
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 7.7e-94 348.2 319 54.9
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.0e-93 347.8 332 55.7
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.7e-93 347.1 325 57.8
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.8e-93 345.9 346 54.6
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 5.0e-93 345.5 342 53.5
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 5.0e-93 345.5 365 52.6
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 6.6e-93 345.1 302 59.6
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 6.6e-93 345.1 285 60.0
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.1e-92 344.4 352 52.6
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.1e-92 344.4 334 55.1
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.9e-92 343.6 317 56.5
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 3.3e-92 342.8 325 55.7
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 3.3e-92 342.8 326 53.4
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.2e-92 342.4 334 55.1
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 5.6e-92 342.0 327 55.0
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 5.6e-92 342.0 341 53.7
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 7.2e-92 341.7 352 52.0
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.2e-92 341.7 349 52.1
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 7.2e-92 341.7 378 50.8
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 7.2e-92 341.7 319 55.8
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 9.5e-92 341.3 373 50.9
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.6e-91 340.5 330 54.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.8e-91 339.7 332 55.1
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.6e-91 339.3 326 54.0
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.1e-91 338.6 316 55.4
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.0e-90 337.8 316 55.1
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.3e-90 336.7 330 54.5
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 2.3e-90 336.7 327 53.5
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 4.0e-90 335.9 337 52.8
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.5e-89 334.0 351 52.1
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 2.0e-89 333.6 355 51.5
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.6e-89 333.2 317 55.2
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 3.4e-89 332.8 322 54.7
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 7.5e-89 331.6 335 51.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 9.8e-89 331.3 317 54.6
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.7e-88 330.5 329 54.7
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.7e-88 330.5 318 56.0
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.9e-88 329.7 375 50.7
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 3.7e-88 329.3 326 54.9
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 4.9e-88 328.9 318 55.0
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 6.4e-88 328.6 318 55.3
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 8.3e-88 328.2 331 53.2
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.4e-87 326.6 347 51.9
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.1e-87 325.9 305 54.1
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 9.2e-87 324.7 332 52.7
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.0e-86 323.6 332 53.0
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 2.7e-86 323.2 332 53.0
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 2.7e-86 323.2 319 51.7
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.9e-85 319.7 339 52.5
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 2.9e-85 319.7 266 59.8
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 5.0e-85 318.9 329 50.2
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 3.3e-84 316.2 318 52.8
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.3e-84 315.8 350 50.0
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 9.5e-84 314.7 311 53.1
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.2e-83 314.3 309 52.8
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 6.2e-83 312.0 326 51.8
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.8e-82 310.5 343 51.9
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.6e-81 306.6 351 49.3
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.6e-81 306.6 288 57.3
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 6.4e-80 302.0 322 53.7
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 2.7e-78 296.6 350 48.0
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 6.0e-78 295.4 278 57.2
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.5e-76 290.8 266 57.1
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 3.4e-73 279.6 228 60.5
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 9.2e-71 271.6 537 34.1
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.3e-69 267.7 403 40.0
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 6.6e-69 265.4 318 49.4
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 4.1e-63 246.1 281 48.4
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.1e-58 231.5 194 58.2
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.8e-58 230.7 230 55.2
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 6.8e-58 228.8 268 47.4
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.2e-57 228.0 190 61.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.6e-57 226.9 207 59.4
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.6e-54 217.6 239 51.9
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 9.0e-50 201.8 280 46.4
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 9.0e-50 201.8 331 41.4
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.0e-49 200.7 163 62.0
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.2e-46 191.4 189 54.5
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.8e-42 177.6 167 52.1
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.4e-40 169.1 155 54.8
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.9e-39 167.5 212 42.9
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.1e-38 164.1 186 50.0
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 5.1e-37 159.5 161 55.9
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 7.1e-31 139.0 374 32.6
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.7e-30 137.1 286 33.2
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 8.7e-29 132.1 193 41.5
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 8.4e-24 115.5 140 51.4
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.2e-23 113.6 105 56.2
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 7.2e-23 112.5 274 31.4
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 2.0e-17 94.4 72 68.1
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.9e-15 87.8 121 40.5
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.4e-12 75.9 127 38.6
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 6.3e-11 72.8 56 62.5
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.4e-10 71.6 63 49.2
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.6e-09 67.4 61 57.4
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.1e-07 62.0 56 50.0


User provided reference genes

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