Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0122s0002 Marchantia polymorpha HOM05D009562 ORTHO05D010783 0.0e+00 1228.4 1041 100.0
Mapoly0122s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.0e-215 754.6 1042 73.6
Mapoly0363s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 3.8e-215 752.7 1090 74.5
Mapoly1649s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.2e-161 573.2 1030 68.9
Mapoly0023s0113 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.6e-157 561.2 1022 64.3
Mapoly0137s0035 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.6e-152 543.1 1063 53.9
Mapoly2524s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.3e-150 536.6 945 73.4
Mapoly1037s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.5e-147 528.1 1044 67.4
Mapoly0015s0130 Marchantia polymorpha HOM05D009562 ORTHO05D010783 2.0e-147 527.7 1047 67.4
Mapoly0268s0002 Marchantia polymorpha HOM05D009562 ORTHO05D010783 6.7e-143 512.7 1043 66.1
Mapoly0129s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 2.5e-121 441.0 1006 67.3
Mapoly0090s0013 Marchantia polymorpha HOM05D009562 ORTHO05D010783 3.6e-120 437.2 554 70.8
Mapoly0160s0033 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.6e-115 421.8 1072 63.4
Mapoly0023s0110 Marchantia polymorpha HOM05D009562 ORTHO05D010783 6.1e-104 383.3 1009 60.2
Mapoly0115s0072 Marchantia polymorpha HOM05D009562 ORTHO05D010783 3.7e-101 374.0 551 63.5
Mapoly2608s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 2.7e-91 341.3 1050 41.9
Mapoly1594s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.9e-76 292.0 659 76.0
Mapoly0647s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 3.3e-73 281.2 317 65.6
Mapoly3096s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.6e-72 278.9 314 65.9
Mapoly2877s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.7e-72 277.3 317 65.9
Mapoly1470s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 2.7e-67 261.5 448 70.1
Mapoly1470s0002 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.2e-62 246.1 270 62.6
Mapoly0118s0002 Marchantia polymorpha HOM05D009352 ORTHO05D010783 6.9e-47 193.7 975 55.4
Mapoly0327s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 8.4e-45 186.8 988 53.8
Mapoly0211s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 5.4e-44 184.1 977 52.1
Mapoly0066s0077 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.3e-40 172.9 993 50.4
Mapoly0158s0040 Marchantia polymorpha HOM05D009352 ORTHO05D010783 6.4e-37 160.6 917 55.4
Mapoly0049s0035 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.9e-33 149.1 318 62.9
Mapoly0048s0054 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.3e-32 146.4 318 62.3
Mapoly3765s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.1e-31 143.3 318 65.7
Mapoly0006s0310 Marchantia polymorpha HOM05D009352 ORTHO05D010783 5.8e-30 137.5 212 57.5
Mapoly0083s0098 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.3e-29 136.3 318 58.8
Mapoly0056s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 9.3e-28 130.2 215 51.2
Mapoly0263s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 3.9e-26 124.8 310 48.4
Mapoly0006s0272 Marchantia polymorpha HOM05D009352 ORTHO05D010783 8.7e-26 123.6 317 64.4
Mapoly0633s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.5e-25 122.9 318 47.5
Mapoly0158s0041 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.6e-22 112.1 923 33.9
Mapoly0009s0035 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.3e-21 109.8 291 44.0
Mapoly2142s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 3.6e-19 101.7 299 45.8
Mapoly0580s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 4.6e-19 101.3 316 43.4
Mapoly0118s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.5e-17 95.5 82 58.5
Mapoly1854s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.4e-15 89.0 270 46.3
Mapoly0693s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 5.3e-15 87.8 295 43.4
Mapoly0008s0173 Marchantia polymorpha HOM05D009352 ORTHO05D000035 6.5e-13 80.9 294 39.8
Pp3c20_20430 Physcomitrium patens HOM05D009352 ORTHO05D017073 1.0e-10 73.6 256 36.7
Mapoly0125s0050 Marchantia polymorpha HOM05D009562 ORTHO05D048722 5.1e-10 71.2 56 60.7
Mapoly0044s0108 Marchantia polymorpha HOM05D009352 ORTHO05D000010 8.8e-10 70.5 307 41.0
Mapoly1150s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.6e-09 68.9 266 44.7
CARHR175480 Cardamine hirsuta HOM05D000021 ORTHO05D000010 7.4e-09 67.4 91 39.6
Thhalv10000746m.g Eutrema salsugineum HOM05D000021 ORTHO05D000010 2.2e-08 65.9 96 38.5
Hma1.2p1_2569F.1_g324605 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 2.8e-08 65.5 118 34.7
Sed0014573 Sechium edule HOM05D000029 ORTHO05D000854 3.7e-08 65.1 77 40.3
A10p29440 Brassica napus HOM05D000029 ORTHO05D008567 4.8e-08 64.7 80 38.8
Medtr0087s0070 Medicago truncatula HOM05D000071 ORTHO05D000029 4.8e-08 64.7 146 36.3
Sabra16G0055300 Salix brachista HOM05D000029 ORTHO05D008567 4.8e-08 64.7 80 42.5
SEGI_22444 Sequoiadendron giganteum HOM05D010421 ORTHO05D000029 4.8e-08 64.7 106 36.8
Thecc.10G091500 Theobroma cacao HOM05D000071 ORTHO05D000029 6.3e-08 64.3 113 35.4
BcaB07g30842 Brassica carinata HOM05D000021 ORTHO05D000010 8.2e-08 63.9 93 37.6
BolC9t55719H Brassica oleracea HOM05D000021 ORTHO05D000010 8.2e-08 63.9 82 37.8
CARHR206210 Cardamine hirsuta HOM05D000029 ORTHO05D008567 8.2e-08 63.9 80 40.0
Gohir.D11G308300 Gossypium hirsutum HOM05D000071 ORTHO05D000029 8.2e-08 63.9 122 40.2
Medtr6g016130 Medicago truncatula HOM05D000071 ORTHO05D000029 8.2e-08 63.9 143 37.1
Rhsim03G0011500 Rhododendron simsii HOM05D000029 ORTHO05D008567 8.2e-08 63.9 87 39.1
SMO147G0088 Selaginella moellendorffii HOM05D025607 ORTHO05D008832 8.2e-08 63.9 84 41.7
HPP92_018942 Vanilla planifolia HOM05D000021 ORTHO05D000010 8.2e-08 63.9 87 46.0
FAN16G1677 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.1e-07 63.5 124 30.6
SMO228G0161 Selaginella moellendorffii HOM05D000053 ORTHO05D000035 1.1e-07 63.5 118 33.1
BcaC04g21710 Brassica carinata HOM05D000021 ORTHO05D000010 1.4e-07 63.2 77 39.0
C09p28410 Brassica napus HOM05D000021 ORTHO05D000010 1.4e-07 63.2 77 39.0
BraA10t44988Z Brassica rapa HOM05D000029 ORTHO05D008567 1.4e-07 63.2 80 37.5
CiPaw.09G034100 Carya illinoinensis HOM05D000029 ORTHO05D008567 1.4e-07 63.2 86 39.5
Prupe.6G212200 Prunus persica HOM05D000029 ORTHO05D000854 1.4e-07 63.2 77 40.3
GSVIVG01028817001 Vitis vinifera HOM05D000071 ORTHO05D000029 1.4e-07 63.2 121 35.5
A09p22240 Brassica napus HOM05D000021 ORTHO05D000010 1.8e-07 62.8 77 39.0
Manes.10G136600 Manihot esculenta HOM05D000071 ORTHO05D000029 2.4e-07 62.4 116 35.3
Gorai.007G338800 Gossypium raimondii HOM05D000071 ORTHO05D000029 3.1e-07 62.0 126 36.5
AT5G46330 Arabidopsis thaliana HOM05D000021 ORTHO05D000010 4.1e-07 61.6 91 37.4
BcaC06g32531 Brassica carinata HOM05D000029 ORTHO05D008567 4.1e-07 61.6 79 39.2
DCAR_029693 Daucus carota HOM05D000071 ORTHO05D000029 4.1e-07 61.6 126 32.5
Migut.J01792 Erythranthe guttata HOM05D000029 ORTHO05D008567 4.1e-07 61.6 81 38.3
Gohir.D11G308150 Gossypium hirsutum HOM05D000071 ORTHO05D000029 4.1e-07 61.6 119 35.3
Gorai.007G338400 Gossypium raimondii HOM05D000071 ORTHO05D000029 4.1e-07 61.6 120 38.3
Gorai.007G339000 Gossypium raimondii HOM05D000071 ORTHO05D000029 4.1e-07 61.6 124 35.5
Lj2g0024572 Lotus japonicus HOM05D000071 ORTHO05D000029 4.1e-07 61.6 128 34.4
Potri.006G056600 Populus trichocarpa HOM05D000029 ORTHO05D008567 4.1e-07 61.6 80 41.2
AagrBONN_evm.TU.Sc2ySwM_344.1878 Anthoceros agrestis HOM05D000029 ORTHO05D001395 5.3e-07 61.2 78 42.3
BolC2t10770H Brassica oleracea HOM05D000021 ORTHO05D000010 5.3e-07 61.2 90 37.8
BraA09t37828Z Brassica rapa HOM05D000021 ORTHO05D000010 5.3e-07 61.2 77 37.7
Carub.0006s0586 Capsella rubella HOM05D000029 ORTHO05D008567 5.3e-07 61.2 80 38.8
Lsat_1_v5_gn_6_48860 Lactuca sativa HOM05D000071 ORTHO05D000029 5.3e-07 61.2 79 45.6
Mapoly0068s0062 Marchantia polymorpha HOM05D009352 ORTHO05D253123 5.3e-07 61.2 282 41.1
Os11g0565920 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 5.3e-07 61.2 105 36.2
SEGI_31013 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 5.3e-07 61.2 81 34.6
CiPaw.05G135900 Carya illinoinensis HOM05D000021 ORTHO05D000010 6.9e-07 60.8 88 42.0
Thhalv10012646m.g Eutrema salsugineum HOM05D000029 ORTHO05D008567 6.9e-07 60.8 82 40.2
BcaC06g32408 Brassica carinata HOM05D000029 ORTHO05D008567 9.1e-07 60.5 81 39.5
CSS0020490 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 9.1e-07 60.5 123 35.0
FvH4_7g14090 Fragaria vesca HOM05D000071 ORTHO05D000029 9.1e-07 60.5 118 33.1
Aa31sc309G10 Aethionema arabicum HOM05D000021 ORTHO05D000010 1.2e-06 60.1 91 37.4
AL6G17090 Arabidopsis lyrata HOM05D000029 ORTHO05D008567 1.2e-06 60.1 80 38.8
Haze_19921 Corylus avellana HOM05D000029 ORTHO05D008567 1.2e-06 60.1 92 38.0
Gorai.007G337100 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.2e-06 60.1 127 36.2
Mapoly0015s0098 Marchantia polymorpha HOM05D009562 ORTHO05D048722 1.2e-06 60.1 49 61.2
Nn1g06211 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.2e-06 60.1 123 31.7
QL05p023770 Quercus lobata HOM05D000071 ORTHO05D000029 1.2e-06 60.1 113 35.4
SpUn0734_0010 Schrenkiella parvula HOM05D000021 ORTHO05D018350 1.2e-06 60.1 96 35.4
SEGI_20356 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.2e-06 60.1 80 36.2
Zm00001eb274000 Zea mays HOM05D000021 ORTHO05D000010 1.2e-06 60.1 77 44.2
Ah.04g150790 Amaranthus hybridus HOM05D000021 ORTHO05D000010 1.5e-06 59.7 78 38.5
AagrBONN_evm.TU.Sc2ySwM_368.1473 Anthoceros agrestis HOM05D013037 ORTHO05D017308 1.5e-06 59.7 293 38.9
BcaC03g16847 Brassica carinata HOM05D000021 ORTHO05D000010 1.5e-06 59.7 77 39.0
CAN.G787.16 Capsicum annuum HOM05D000021 ORTHO05D000010 1.5e-06 59.7 92 39.1
Eucgr.C00631 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.5e-06 59.7 92 33.7
Lsat_1_v5_gn_6_51440 Lactuca sativa HOM05D000071 ORTHO05D000029 1.5e-06 59.7 79 43.0
Manes.09G007400 Manihot esculenta HOM05D000071 ORTHO05D000029 1.5e-06 59.7 114 35.1
Manes.09G030200 Manihot esculenta HOM05D000029 ORTHO05D008567 1.5e-06 59.7 101 38.6
Hund19173 Selenicereus undatus HOM05D000029 ORTHO05D008567 1.5e-06 59.7 87 39.1
PGSC0003DMG400012926 Solanum tuberosum HOM05D000029 ORTHO05D008567 1.5e-06 59.7 89 34.8
Aa31LG9G6570 Aethionema arabicum HOM05D000021 ORTHO05D000010 2.0e-06 59.3 91 36.3
AagrBONN_evm.TU.Sc2ySwM_368.87 Anthoceros agrestis HOM05D009352 ORTHO05D010783 2.0e-06 59.3 93 38.7
MSTRG.15000 Avicennia marina HOM05D000029 ORTHO05D002162 2.0e-06 59.3 92 35.9
COL.COLO4_04589 Corchorus olitorius HOM05D000071 ORTHO05D000029 2.0e-06 59.3 123 32.5
FAN01G1144 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.0e-06 59.3 279 24.4
MD01G1212600 Malus domestica HOM05D000071 ORTHO05D000029 2.0e-06 59.3 118 38.1
Manes.10G092700 Manihot esculenta HOM05D000071 ORTHO05D000029 2.0e-06 59.3 114 32.5
Mapoly0044s0103 Marchantia polymorpha HOM05D000021 ORTHO05D000010 2.0e-06 59.3 283 36.4
Medtr0017s0270 Medicago truncatula HOM05D000071 ORTHO05D000029 2.0e-06 59.3 126 34.1
Nitab4.5_0000617g0280 Nicotiana tabacum HOM05D000071 ORTHO05D000029 2.0e-06 59.3 120 36.7
TAR628G0246 Trochodendron aralioides HOM05D000021 ORTHO05D000010 2.0e-06 59.3 75 44.0
AL8G12090 Arabidopsis lyrata HOM05D000021 ORTHO05D000010 2.6e-06 58.9 82 36.6
A02p29860 Brassica napus HOM05D000021 ORTHO05D000010 2.6e-06 58.9 77 39.0
A04p24500 Brassica napus HOM05D000053 ORTHO05D000035 2.6e-06 58.9 117 39.3
BraA02t08007Z Brassica rapa HOM05D000021 ORTHO05D000010 2.6e-06 58.9 77 39.0
CSS0019456 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 2.6e-06 58.9 77 40.3
Eucgr.A02410 Eucalyptus grandis HOM05D000029 ORTHO05D008567 2.6e-06 58.9 84 39.3
Lsat_1_v5_gn_6_48780 Lactuca sativa HOM05D000071 ORTHO05D000029 2.6e-06 58.9 79 44.3
Lj1g0017370 Lotus japonicus HOM05D000071 ORTHO05D000029 2.6e-06 58.9 130 34.6
Os01g0523100 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 2.6e-06 58.9 93 37.6
Pp3c25_4480 Physcomitrium patens HOM05D009352 ORTHO05D008567 2.6e-06 58.9 274 34.7
QL05p024087 Quercus lobata HOM05D000071 ORTHO05D000029 2.6e-06 58.9 113 36.3
Sp6g35930 Schrenkiella parvula HOM05D000029 ORTHO05D008567 2.6e-06 58.9 82 40.2
AT5G06940 Arabidopsis thaliana HOM05D000029 ORTHO05D008567 3.4e-06 58.5 80 38.8
ClCG01G004890 Citrullus lanatus HOM05D000071 ORTHO05D000029 3.4e-06 58.5 129 33.3
MELO3C007675.2 Cucumis melo HOM05D000029 ORTHO05D000854 3.4e-06 58.5 77 36.4
FAN02G3130 Fragaria x ananassa HOM05D000071 ORTHO05D000029 3.4e-06 58.5 113 36.3
Lj1g0022948 Lotus japonicus HOM05D000071 ORTHO05D000029 3.4e-06 58.5 143 33.6
Mapoly0075s0012 Marchantia polymorpha HOM05D009352 ORTHO05D010783 3.4e-06 58.5 145 62.8
Phvul.002G007600 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 3.4e-06 58.5 83 36.1
SGA_v2.0_scaffold12G06031 Striga asiatica HOM05D000168 ORTHO05D000811 3.4e-06 58.5 79 43.0
Aa31sc24G170 Aethionema arabicum HOM05D000029 ORTHO05D008567 4.5e-06 58.2 80 35.0
Gohir.D11G299800 Gossypium hirsutum HOM05D000071 ORTHO05D000029 4.5e-06 58.2 139 33.8
Lsat_1_v5_gn_6_53901 Lactuca sativa HOM05D000071 ORTHO05D000029 4.5e-06 58.2 79 44.3
PGR044G1794 Punica granatum HOM05D000021 ORTHO05D000010 4.5e-06 58.2 75 42.7
Rhsim08G0088900 Rhododendron simsii HOM05D000029 ORTHO05D000854 4.5e-06 58.2 90 35.6
Rhsim10G0084900 Rhododendron simsii HOM05D000029 ORTHO05D008832 4.5e-06 58.2 72 41.7
Zm00001eb170460 Zea mays HOM05D000021 ORTHO05D000010 4.5e-06 58.2 80 41.2
MSTRG.6170 Avicennia marina HOM05D000168 ORTHO05D000811 5.9e-06 57.8 90 41.1
C09p69820 Brassica napus HOM05D000029 ORTHO05D008567 5.9e-06 57.8 80 37.5
BolC9t59726H Brassica oleracea HOM05D000029 ORTHO05D008567 5.9e-06 57.8 80 37.5
FAN14G0510 Fragaria x ananassa HOM05D000071 ORTHO05D000029 5.9e-06 57.8 111 36.0
Lj3P710T6 Lonicera japonica HOM05D000021 ORTHO05D000010 5.9e-06 57.8 80 42.5
Medtr5g025180 Medicago truncatula HOM05D000021 ORTHO05D000010 5.9e-06 57.8 90 38.9
Nitab4.5_0000452g0160 Nicotiana tabacum HOM05D000029 ORTHO05D008567 5.9e-06 57.8 89 34.8
Phvul.001G137300 Phaseolus vulgaris HOM05D000029 ORTHO05D008567 5.9e-06 57.8 82 37.8
RcHm_v2.0_Chr2g0109581 Rosa chinensis HOM05D000029 ORTHO05D000854 5.9e-06 57.8 92 35.9
TPR.G732 Trifolium pratense HOM05D000071 ORTHO05D000029 5.9e-06 57.8 75 44.0
TAR633G2674 Trochodendron aralioides HOM05D000021 ORTHO05D000010 5.9e-06 57.8 75 41.3
AagrBONN_evm.TU.Sc2ySwM_117.3325 Anthoceros agrestis HOM05D013037 ORTHO05D017308 7.7e-06 57.4 90 37.8
Cpa.g.sc229.9 Carica papaya HOM05D000029 ORTHO05D002162 7.7e-06 57.4 75 42.7
Ciclev10030587m.g Citrus clementina HOM05D000021 ORTHO05D000010 7.7e-06 57.4 97 42.3
Lsat_1_v5_gn_0_36620 Lactuca sativa HOM05D000071 ORTHO05D000029 7.7e-06 57.4 71 46.5
Lj1g0009087 Lotus japonicus HOM05D000071 ORTHO05D000029 7.7e-06 57.4 294 40.8
Lj1g0015052 Lotus japonicus HOM05D000071 ORTHO05D000029 7.7e-06 57.4 294 40.8
Oeu038846.2 Olea europaea HOM05D000071 ORTHO05D000029 7.7e-06 57.4 103 35.0
RcHm_v2.0_Chr2g0132821 Rosa chinensis HOM05D000071 ORTHO05D000029 7.7e-06 57.4 113 36.3
SEGI_10659 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 7.7e-06 57.4 80 35.0
Thecc.10G022300 Theobroma cacao HOM05D000021 ORTHO05D000010 7.7e-06 57.4 71 47.9
TAR038G0001 Trochodendron aralioides HOM05D000132 ORTHO05D000058 7.7e-06 57.4 63 41.3
VMungo1383G2988 Vigna mungo HOM05D000029 ORTHO05D008567 7.7e-06 57.4 82 37.8


User provided reference genes

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