Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0122s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 0.0e+00 1255.7 1041 100.0
Mapoly0122s0002 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.6e-216 757.3 1042 73.6
Mapoly0363s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.9e-193 680.6 1086 69.7
Mapoly0137s0035 Marchantia polymorpha HOM05D009562 ORTHO05D010783 3.0e-151 540.4 1089 53.0
Mapoly1649s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.9e-150 537.7 1031 67.1
Mapoly0023s0113 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.0e-148 530.0 1023 63.1
Mapoly1037s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.3e-142 510.0 967 68.9
Mapoly0268s0002 Marchantia polymorpha HOM05D009562 ORTHO05D010783 5.9e-139 499.6 1047 65.0
Mapoly0015s0130 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.3e-135 488.4 1042 65.8
Mapoly2524s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.3e-134 483.4 945 67.1
Mapoly0129s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.3e-126 456.8 1006 68.1
Mapoly0090s0013 Marchantia polymorpha HOM05D009562 ORTHO05D010783 5.5e-121 439.9 556 67.8
Mapoly0160s0033 Marchantia polymorpha HOM05D009562 ORTHO05D010783 8.8e-119 432.6 1072 62.5
Mapoly0115s0072 Marchantia polymorpha HOM05D009562 ORTHO05D010783 9.5e-97 359.4 549 59.9
Mapoly0023s0110 Marchantia polymorpha HOM05D009562 ORTHO05D010783 6.1e-88 330.1 1009 55.8
Mapoly1594s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.6e-75 288.9 659 71.9
Mapoly2608s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.2e-72 279.3 1051 36.3
Mapoly0647s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 7.8e-67 260.0 364 56.0
Mapoly3096s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.1e-65 256.1 364 65.1
Mapoly2877s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 2.1e-64 251.9 315 61.9
Mapoly1470s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 2.8e-64 251.5 445 67.4
Mapoly0211s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.1e-51 208.8 970 53.8
Mapoly1470s0002 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.3e-50 206.1 293 52.6
Mapoly0118s0002 Marchantia polymorpha HOM05D009352 ORTHO05D010783 4.6e-43 181.0 969 52.8
Mapoly0327s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 8.7e-42 176.8 961 53.1
Mapoly0066s0077 Marchantia polymorpha HOM05D009352 ORTHO05D010783 4.2e-36 157.9 319 57.4
Mapoly0158s0040 Marchantia polymorpha HOM05D009352 ORTHO05D010783 3.0e-34 151.8 913 52.9
Mapoly0049s0035 Marchantia polymorpha HOM05D009352 ORTHO05D010783 6.2e-32 144.1 469 49.5
Mapoly0083s0098 Marchantia polymorpha HOM05D009352 ORTHO05D010783 3.1e-31 141.7 323 57.3
Mapoly0006s0310 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.6e-30 138.7 322 53.1
Mapoly0056s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.0e-29 136.7 400 48.8
Mapoly0048s0054 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.7e-29 136.0 400 54.8
Mapoly3765s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 8.4e-29 133.7 405 56.5
Mapoly0158s0041 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.2e-22 113.2 311 41.5
Mapoly0263s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 3.3e-17 95.1 302 44.7
Mapoly0006s0272 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.8e-16 92.0 319 56.1
Mapoly0009s0035 Marchantia polymorpha HOM05D009352 ORTHO05D010783 6.3e-16 90.9 96 49.0
Mapoly0633s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 6.3e-16 90.9 308 42.9
Mapoly0118s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.4e-15 89.7 72 59.7
Mapoly0580s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.4e-15 89.7 310 45.5
Mapoly1854s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.9e-13 82.0 271 48.3
Mapoly2142s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.1e-09 70.1 289 41.5
Mapoly0056s0002 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.6e-09 68.9 142 33.1
CARHR175480 Cardamine hirsuta HOM05D000021 ORTHO05D000010 4.4e-09 68.2 81 42.0
Thhalv10000746m.g Eutrema salsugineum HOM05D000021 ORTHO05D000010 9.7e-09 67.0 81 42.0
Mapoly0693s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.3e-08 66.6 295 43.1
BraA09t37828Z Brassica rapa HOM05D000021 ORTHO05D000010 1.7e-08 66.2 81 40.7
BcaC04g21710 Brassica carinata HOM05D000021 ORTHO05D000010 3.7e-08 65.1 72 40.3
A09p22240 Brassica napus HOM05D000021 ORTHO05D000010 3.7e-08 65.1 81 39.5
C09p28410 Brassica napus HOM05D000021 ORTHO05D000010 3.7e-08 65.1 72 40.3
BolC2t10770H Brassica oleracea HOM05D000021 ORTHO05D000010 3.7e-08 65.1 86 38.4
BolC9t55719H Brassica oleracea HOM05D000021 ORTHO05D000010 3.7e-08 65.1 72 40.3
BcaB07g30842 Brassica carinata HOM05D000021 ORTHO05D000010 4.8e-08 64.7 72 40.3
BcaC03g16847 Brassica carinata HOM05D000021 ORTHO05D000010 4.8e-08 64.7 81 39.5
Pp3c20_20430 Physcomitrium patens HOM05D009352 ORTHO05D017073 6.3e-08 64.3 257 31.9
SMO228G0161 Selaginella moellendorffii HOM05D000053 ORTHO05D000035 6.3e-08 64.3 111 44.1
A02p29860 Brassica napus HOM05D000021 ORTHO05D000010 1.1e-07 63.5 77 37.7
BraA02t08007Z Brassica rapa HOM05D000021 ORTHO05D000010 1.1e-07 63.5 77 37.7
AT5G46330 Arabidopsis thaliana HOM05D000021 ORTHO05D000010 1.4e-07 63.2 82 39.0
Rhsim10G0084900 Rhododendron simsii HOM05D000029 ORTHO05D008832 1.8e-07 62.8 72 43.1
THA.LOC104805973 Tarenaya hassleriana HOM05D000033 ORTHO05D001688 1.8e-07 62.8 81 40.7
Haze_19921 Corylus avellana HOM05D000029 ORTHO05D008567 2.4e-07 62.4 84 39.3
MELO3C007675.2 Cucumis melo HOM05D000029 ORTHO05D000854 2.4e-07 62.4 69 43.5
TPR.G4214 Trifolium pratense HOM05D000517 ORTHO05D003374 3.1e-07 62.0 191 30.4
CAN.G787.16 Capsicum annuum HOM05D000021 ORTHO05D000010 4.1e-07 61.6 85 42.4
HanXRQChr07g0200541 Helianthus annuus HOM05D000021 ORTHO05D000010 4.1e-07 61.6 70 47.1
LjContig00357g0014932 Lotus japonicus HOM05D000021 ORTHO05D000010 4.1e-07 61.6 82 42.7
Hund19173 Selenicereus undatus HOM05D000029 ORTHO05D008567 4.1e-07 61.6 80 41.2
BcaB01g00878 Brassica carinata HOM05D000053 ORTHO05D000035 5.3e-07 61.2 266 24.8
CSS0012325 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 5.3e-07 61.2 82 37.8
Mapoly0008s0173 Marchantia polymorpha HOM05D009352 ORTHO05D000035 5.3e-07 61.2 117 30.8
Aa31sc309G10 Aethionema arabicum HOM05D000021 ORTHO05D000010 6.9e-07 60.8 81 40.7
CAN.G186.54 Capsicum annuum HOM05D000021 ORTHO05D000010 6.9e-07 60.8 84 47.6
Ciclev10024610m.g Citrus clementina HOM05D000021 ORTHO05D000010 6.9e-07 60.8 74 41.9
Sed0019229 Sechium edule HOM05D009562 ORTHO05D008832 6.9e-07 60.8 72 44.4
CiPaw.09G034100 Carya illinoinensis HOM05D000029 ORTHO05D008567 9.1e-07 60.5 81 38.3
CsaV3_6G044530 Cucumis sativus L. HOM05D000029 ORTHO05D000854 9.1e-07 60.5 69 42.0
Nitab4.5_0004219g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 9.1e-07 60.5 65 40.0
Sed0014573 Sechium edule HOM05D000029 ORTHO05D000854 9.1e-07 60.5 73 42.5
SMO147G0088 Selaginella moellendorffii HOM05D025607 ORTHO05D008832 9.1e-07 60.5 72 41.7
AL8G12090 Arabidopsis lyrata HOM05D000021 ORTHO05D000010 1.2e-06 60.1 72 38.9
RcHm_v2.0_Chr2g0109581 Rosa chinensis HOM05D000029 ORTHO05D000854 1.2e-06 60.1 90 37.8
SpUn0734_0010 Schrenkiella parvula HOM05D000021 ORTHO05D018350 1.2e-06 60.1 81 38.3
THA.LOC104827727 Tarenaya hassleriana HOM05D000021 ORTHO05D000010 1.2e-06 60.1 87 36.8
arahy.Tifrunner.gnm1.ann1.IR5FBL Arachis hypogaea HOM05D000021 ORTHO05D000010 1.5e-06 59.7 85 41.2
DCAR_010771 Daucus carota HOM05D000029 ORTHO05D000854 1.5e-06 59.7 72 38.9
PSO732G0269 Papaver somniferum HOM05D000021 ORTHO05D000010 1.5e-06 59.7 70 47.1
Sabra16G0055300 Salix brachista HOM05D000029 ORTHO05D008567 1.5e-06 59.7 75 40.0
Cfa016875 Carpinus fangiana HOM05D000029 ORTHO05D008567 2.0e-06 59.3 81 38.3
Mapoly0089s0004 Marchantia polymorpha HOM05D000029 ORTHO05D002586 2.0e-06 59.3 74 48.6
Phvul.001G137300 Phaseolus vulgaris HOM05D000029 ORTHO05D008567 2.0e-06 59.3 87 39.1
PGSC0003DMG400012926 Solanum tuberosum HOM05D000029 ORTHO05D008567 2.0e-06 59.3 85 36.5
CANSAT01G3133 Cannabis sativa HOM05D000029 ORTHO05D000854 2.6e-06 58.9 78 39.7
Cfa002635 Carpinus fangiana HOM05D000168 ORTHO05D001942 2.6e-06 58.9 72 41.7
Glyma.03G140700 Glycine max HOM05D000029 ORTHO05D008567 2.6e-06 58.9 80 41.2
PGSC0003DMG400006065 Solanum tuberosum HOM05D000021 ORTHO05D000010 2.6e-06 58.9 83 39.8
AagrBONN_evm.TU.Sc2ySwM_362.1480 Anthoceros agrestis HOM05D012062 ORTHO05D000010 3.4e-06 58.5 120 39.2
arahy.Tifrunner.gnm1.ann1.J6FSGL Arachis hypogaea HOM05D000021 ORTHO05D000010 3.4e-06 58.5 83 39.8
Eucgr.C00631 Eucalyptus grandis HOM05D000021 ORTHO05D000010 3.4e-06 58.5 85 38.8
Eucgr.L01229 Eucalyptus grandis HOM05D000021 ORTHO05D000010 3.4e-06 58.5 70 47.1
HanXRQChr02g0057531 Helianthus annuus HOM05D000071 ORTHO05D000029 3.4e-06 58.5 74 45.9
PSO423G0110 Papaver somniferum HOM05D000021 ORTHO05D000010 3.4e-06 58.5 72 44.4
PSO596G0038 Papaver somniferum HOM05D000021 ORTHO05D000010 3.4e-06 58.5 72 44.4
PGSC0003DMG402005482 Solanum tuberosum HOM05D000021 ORTHO05D000010 3.4e-06 58.5 87 40.2
Ah.02g124560 Amaranthus hybridus HOM05D002919 ORTHO05D003327 4.5e-06 58.2 73 42.5
Carub.0008s0158 Capsella rubella HOM05D000021 ORTHO05D000010 4.5e-06 58.2 72 38.9
Ca_08488_v3 Cicer arietinum L. HOM05D000029 ORTHO05D008567 4.5e-06 58.2 78 38.5
Dinv30711 Davidia involucrata HOM05D000021 ORTHO05D000010 4.5e-06 58.2 82 37.8
Migut.J01792 Erythranthe guttata HOM05D000029 ORTHO05D008567 4.5e-06 58.2 87 37.9
Glyma.19G143300 Glycine max HOM05D000029 ORTHO05D008567 4.5e-06 58.2 80 40.0
HanXRQChr02g0057651 Helianthus annuus HOM05D001705 ORTHO05D002725 4.5e-06 58.2 74 44.6
HanXRQChr02g0057931 Helianthus annuus HOM05D000071 ORTHO05D000029 4.5e-06 58.2 69 47.8
Medtr4g097880 Medicago truncatula HOM05D000029 ORTHO05D000854 4.5e-06 58.2 72 43.1
Nitab4.5_0000057g0030 Nicotiana tabacum HOM05D000021 ORTHO05D000010 4.5e-06 58.2 83 38.6
Nitab4.5_0005800g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 4.5e-06 58.2 83 38.6
Prupe.6G212200 Prunus persica HOM05D000029 ORTHO05D000854 4.5e-06 58.2 77 39.0
Solyc07g015990.2 Solanum lycopersicum HOM05D000021 ORTHO05D000010 4.5e-06 58.2 86 40.7
PGSC0003DMG400023639 Solanum tuberosum HOM05D000021 ORTHO05D000010 4.5e-06 58.2 83 39.8
PGSC0003DMG401023640 Solanum tuberosum HOM05D000021 ORTHO05D000010 4.5e-06 58.2 85 40.0
TPR.G26012 Trifolium pratense HOM05D000029 ORTHO05D000854 4.5e-06 58.2 79 39.2
HPP92_018942 Vanilla planifolia HOM05D000021 ORTHO05D000010 4.5e-06 58.2 90 42.2
Ah.04g150790 Amaranthus hybridus HOM05D000021 ORTHO05D000010 5.9e-06 57.8 71 42.3
CARHR206210 Cardamine hirsuta HOM05D000029 ORTHO05D008567 5.9e-06 57.8 80 38.8
Nitab4.5_0000057g0040 Nicotiana tabacum HOM05D000021 ORTHO05D000010 5.9e-06 57.8 85 41.2
SalBow7G0526 Salvia bowleyana HOM05D000021 ORTHO05D000010 5.9e-06 57.8 76 44.7
SalBow7G0737 Salvia bowleyana HOM05D000021 ORTHO05D000010 5.9e-06 57.8 76 44.7
TAR633G2674 Trochodendron aralioides HOM05D000021 ORTHO05D000010 5.9e-06 57.8 85 42.4
CAN.G525.61 Capsicum annuum HOM05D000021 ORTHO05D000010 7.7e-06 57.4 85 40.0
ClCG01G018010 Citrullus lanatus HOM05D000029 ORTHO05D000854 7.7e-06 57.4 69 42.0
Ciclev10027688m.g Citrus clementina HOM05D000021 ORTHO05D000010 7.7e-06 57.4 84 39.3
Haze_24902 Corylus avellana HOM05D000168 ORTHO05D001942 7.7e-06 57.4 72 41.7
Os04g0122200 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 7.7e-06 57.4 84 34.5
PSO478G4958 Papaver somniferum HOM05D000029 ORTHO05D002544 7.7e-06 57.4 74 40.5
Pp3c2_18570 Physcomitrium patens HOM05D000029 ORTHO05D002586 7.7e-06 57.4 83 41.0
Potri.016G029900 Populus trichocarpa HOM05D000021 ORTHO05D000010 7.7e-06 57.4 84 36.9
Potri.016G051600 Populus trichocarpa HOM05D000029 ORTHO05D008567 7.7e-06 57.4 75 37.3
Prupe.7G069000 Prunus persica HOM05D000029 ORTHO05D008567 7.7e-06 57.4 81 35.8
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 7.7e-06 57.4 84 34.5
SMO273G0034 Selaginella moellendorffii HOM05D009562 ORTHO05D002063 7.7e-06 57.4 80 38.8
Hund15894 Selenicereus undatus HOM05D000761 ORTHO05D001062 7.7e-06 57.4 87 34.5
SEGI_31013 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 7.7e-06 57.4 75 37.3
vmacro09201 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 7.7e-06 57.4 83 41.0
vmacro09202 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 7.7e-06 57.4 84 39.3


User provided reference genes

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