Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0109s0030 Marchantia polymorpha HOM05D006435 ORTHO05D008262 1.3e-177 626.3 314 100.0
SEGI_13627 Sequoiadendron giganteum HOM05D006435 ORTHO05D008262 1.1e-75 287.7 219 65.8
Pp3c15_3110 Physcomitrium patens HOM05D006435 ORTHO05D008262 3.4e-74 282.7 203 70.0
Nn2g11721 Nelumbo nucifera HOM05D006435 ORTHO05D008262 7.6e-74 281.6 242 62.4
SGA_v2.0_scaffold280G46829 Striga asiatica HOM05D006435 ORTHO05D008262 4.9e-73 278.9 202 70.3
AagrBONN_evm.TU.Sc2ySwM_117.700 Anthoceros agrestis HOM05D006435 ORTHO05D008262 1.2e-71 274.2 220 65.5
DCAR_007705 Daucus carota HOM05D006435 ORTHO05D008262 1.2e-71 274.2 210 66.7
MSTRG.11716 Avicennia marina HOM05D006435 ORTHO05D008262 1.6e-71 273.9 214 66.4
TPR.G12017 Trifolium pratense HOM05D006435 ORTHO05D008262 1.6e-71 273.9 192 71.9
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 2.7e-71 273.1 214 65.4
Migut.A00245 Erythranthe guttata HOM05D006435 ORTHO05D008262 2.7e-71 273.1 251 60.2
CsaV3_3G047410 Cucumis sativus L. HOM05D006435 ORTHO05D008262 4.6e-71 272.3 198 68.7
CSS0040195 Camellia sinensis var. sinensis HOM05D006435 ORTHO05D008262 7.8e-71 271.6 220 66.4
HanXRQChr02g0048091 Helianthus annuus HOM05D006435 ORTHO05D008262 7.8e-71 271.6 215 65.1
Duzib187G0700 Durio zibethinus HOM05D006435 ORTHO05D008262 1.3e-70 270.8 213 66.2
Glyma.17G190400 Glycine max HOM05D006435 ORTHO05D008262 1.3e-70 270.8 220 65.0
Oeu063249.1 Olea europaea HOM05D006435 ORTHO05D008262 1.3e-70 270.8 222 64.4
MD15G1097700 Malus domestica HOM05D006435 ORTHO05D008262 1.7e-70 270.4 219 63.5
PSO782G5114 Papaver somniferum HOM05D006435 ORTHO05D008262 1.7e-70 270.4 224 63.8
Phvul.001G078600 Phaseolus vulgaris HOM05D006435 ORTHO05D008262 1.7e-70 270.4 198 69.7
PSO832G3386 Papaver somniferum HOM05D006435 ORTHO05D008262 2.3e-70 270.0 224 63.8
Lalb_Chr22g0360991 Lupinus albus HOM05D006435 ORTHO05D008262 3.9e-70 269.2 213 66.7
arahy.Tifrunner.gnm1.ann1.W16L9Q Arachis hypogaea HOM05D006435 ORTHO05D008262 6.6e-70 268.5 220 64.5
CiPaw.07G207200 Carya illinoinensis HOM05D006435 ORTHO05D008262 6.6e-70 268.5 198 68.2
MELO3C003582.2 Cucumis melo HOM05D006435 ORTHO05D008262 8.6e-70 268.1 212 65.1
Medtr1g008300 Medicago truncatula HOM05D006435 ORTHO05D008262 8.6e-70 268.1 223 63.7
CANSAT80G2129 Cannabis sativa HOM05D006435 ORTHO05D008262 1.1e-69 267.7 188 72.3
SalBow4G2069 Salvia bowleyana HOM05D006435 ORTHO05D008262 1.1e-69 267.7 197 69.0
VMungo0647G0379 Vigna mungo HOM05D006435 ORTHO05D008262 1.1e-69 267.7 221 63.8
Ah.16g105260 Amaranthus hybridus HOM05D006435 ORTHO05D008262 1.5e-69 267.3 219 63.5
arahy.Tifrunner.gnm1.ann1.463B8J Arachis hypogaea HOM05D006435 ORTHO05D008262 1.5e-69 267.3 220 64.5
Cfa013344 Carpinus fangiana HOM05D006435 ORTHO05D008262 1.5e-69 267.3 189 70.9
FvH4_2g36120 Fragaria vesca HOM05D006435 ORTHO05D008262 1.5e-69 267.3 192 67.2
TWI32G0701 Tripterygium wilfordii HOM05D006435 ORTHO05D008262 1.5e-69 267.3 203 67.5
ATR0315G035 Amborella trichopoda HOM05D006435 ORTHO05D008262 1.9e-69 266.9 216 62.5
FAN27G2865 Fragaria x ananassa HOM05D006435 ORTHO05D008262 1.9e-69 266.9 192 66.7
Sed0025420 Sechium edule HOM05D006435 ORTHO05D008262 1.9e-69 266.9 207 64.7
Thecc.09G039800 Theobroma cacao HOM05D006435 ORTHO05D008262 1.9e-69 266.9 213 63.8
CDE05G2477 Ceratophyllum demersum HOM05D006435 ORTHO05D008262 2.5e-69 266.5 218 62.4
Cc00_g17690 Coffea canephora HOM05D006435 ORTHO05D008262 3.3e-69 266.2 217 65.9
Eucgr.C01580 Eucalyptus grandis HOM05D006435 ORTHO05D008262 3.3e-69 266.2 214 65.0
QL12p026394 Quercus lobata HOM05D006435 ORTHO05D008262 3.3e-69 266.2 198 68.2
Gohir.D05G050300 Gossypium hirsutum HOM05D006435 ORTHO05D008262 4.3e-69 265.8 211 63.5
Gorai.009G051800 Gossypium raimondii HOM05D006435 ORTHO05D008262 4.3e-69 265.8 212 64.6
Thhalv10004692m.g Eutrema salsugineum HOM05D006435 ORTHO05D008262 5.6e-69 265.4 194 68.6
Lj8C603T5 Lonicera japonica HOM05D006435 ORTHO05D008262 5.6e-69 265.4 199 68.3
Hma1.2p1_0140F.1_g063520 Hydrangea macrophylla HOM05D006435 ORTHO05D008262 7.3e-69 265.0 193 69.4
vmacro11085 Vaccinium macrocarpon HOM05D006435 ORTHO05D008262 7.3e-69 265.0 216 63.4
AL6G37530 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 9.6e-69 264.6 194 68.6
AUR62023016 Chenopodium quinoa HOM05D006435 ORTHO05D008262 9.6e-69 264.6 212 66.0
MBI01_g28042_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 9.6e-69 264.6 218 62.8
THA.LOC104815054 Tarenaya hassleriana HOM05D006435 ORTHO05D008262 9.6e-69 264.6 200 68.0
Aa31LG11G4730 Aethionema arabicum HOM05D006435 ORTHO05D008262 1.2e-68 264.2 194 68.6
CARHR187680 Cardamine hirsuta HOM05D006435 ORTHO05D008262 1.2e-68 264.2 193 68.4
BcaC03g17897 Brassica carinata HOM05D006435 ORTHO05D008262 1.6e-68 263.8 210 64.3
C02p59390 Brassica napus HOM05D006435 ORTHO05D008262 1.6e-68 263.8 210 64.3
Carub.0006s2947 Capsella rubella HOM05D006435 ORTHO05D008262 1.6e-68 263.8 194 68.6
AUR62009330 Chenopodium quinoa HOM05D006435 ORTHO05D008262 1.6e-68 263.8 215 65.6
Lsat_1_v5_gn_6_10980 Lactuca sativa HOM05D006435 ORTHO05D008262 1.6e-68 263.8 256 58.6
GSVIVG01035670001 Vitis vinifera HOM05D006435 ORTHO05D008262 1.6e-68 263.8 197 68.5
Rhsim02G0182200 Rhododendron simsii HOM05D006435 ORTHO05D008262 2.1e-68 263.5 203 67.0
BraA02t08928Z Brassica rapa HOM05D006435 ORTHO05D008262 2.8e-68 263.1 209 64.6
Ciclev10009372m.g Citrus clementina HOM05D006435 ORTHO05D008262 2.8e-68 263.1 200 68.0
SMO116G0425 Selaginella moellendorffii HOM05D006435 ORTHO05D008262 2.8e-68 263.1 239 54.8
Hund19545 Selenicereus undatus HOM05D006435 ORTHO05D008262 2.8e-68 263.1 276 54.7
BcaB07g29986 Brassica carinata HOM05D006435 ORTHO05D008262 3.6e-68 262.7 194 67.5
RcHm_v2.0_Chr6g0305751 Rosa chinensis HOM05D006435 ORTHO05D008262 3.6e-68 262.7 192 66.7
Sp2g21890 Schrenkiella parvula HOM05D006435 ORTHO05D008262 3.6e-68 262.7 188 70.2
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 3.6e-68 262.7 231 61.0
Prupe.1G452600 Prunus persica HOM05D006435 ORTHO05D008262 4.7e-68 262.3 191 69.6
Cpa.g.sc78.80 Carica papaya HOM05D006435 ORTHO05D008262 6.2e-68 261.9 200 65.5
Lj1g0009240 Lotus japonicus HOM05D006435 ORTHO05D008262 6.2e-68 261.9 220 63.2
Solyc08g068270.3 Solanum lycopersicum HOM05D006435 ORTHO05D008262 8.1e-68 261.5 209 64.1
Atru.chr7.2160 Acer truncatum HOM05D006435 ORTHO05D008262 1.1e-67 261.2 191 69.1
EL10Ac2g04073 Beta vulgaris HOM05D006435 ORTHO05D008262 1.1e-67 261.2 194 68.0
Gohir.A05G048400 Gossypium hirsutum HOM05D006435 ORTHO05D008262 1.4e-67 260.8 198 65.2
HPP92_001799 Vanilla planifolia HOM05D006435 ORTHO05D008262 1.4e-67 260.8 221 62.0
Sopen08g022120 Solanum pennellii HOM05D006435 ORTHO05D008262 1.8e-67 260.4 209 64.1
Manes.03G062800 Manihot esculenta HOM05D006435 ORTHO05D008262 3.1e-67 259.6 195 67.2
Actinidia31221 Actinidia chinensis HOM05D006435 ORTHO05D008262 5.2e-67 258.8 198 63.6
Potri.018G037300 Populus trichocarpa HOM05D006435 ORTHO05D008262 6.8e-67 258.5 197 66.5
PGSC0003DMG400014515 Solanum tuberosum HOM05D006435 ORTHO05D008262 6.8e-67 258.5 212 63.7
CAN.G797.1 Capsicum annuum HOM05D006435 ORTHO05D008262 2.0e-66 256.9 218 59.6
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 2.0e-66 256.9 204 65.7
ECA233G4084 Erigeron canadensis HOM05D006435 ORTHO05D008262 3.8e-65 252.7 201 65.2
Nitab4.5_0003338g0080 Nicotiana tabacum HOM05D006435 ORTHO05D008262 3.8e-65 252.7 194 65.5
Haze_21849 Corylus avellana HOM05D006435 ORTHO05D008262 7.1e-64 248.4 165 73.9
Os05g0220600 Oryza sativa ssp. japonica HOM05D006435 ORTHO05D008262 1.2e-63 247.7 194 63.4
FAN20G0337 Fragaria x ananassa HOM05D006435 ORTHO05D008262 5.1e-62 242.3 192 63.5
Zm00001eb350490 Zea mays HOM05D006435 ORTHO05D008262 5.1e-62 242.3 222 56.8
Sc09g0009090 Simmondsia chinensis HOM05D006435 ORTHO05D008262 8.7e-62 241.5 194 63.4
TAR624G0864 Trochodendron aralioides HOM05D006435 ORTHO05D008262 8.7e-62 241.5 160 74.4
VMungo1215G1854 Vigna mungo HOM05D006435 ORTHO05D008262 2.5e-61 240.0 200 64.0
COL.COLO4_18696 Corchorus olitorius HOM05D006435 ORTHO05D008262 4.6e-55 219.2 197 60.4
Psat6g034280 Pisum sativum HOM05D006435 ORTHO05D008262 4.6e-55 219.2 166 66.3
AL6G37520 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 5.1e-54 215.7 209 55.0
PGR031G0325 Punica granatum HOM05D006435 ORTHO05D008262 2.5e-53 213.4 161 65.8
Eucgr.L02138 Eucalyptus grandis HOM05D006435 ORTHO05D008262 7.4e-53 211.8 214 56.5
AT5G25640 Arabidopsis thaliana HOM05D006435 ORTHO05D008262 6.2e-52 208.8 238 50.0
Carub.0006s2351 Capsella rubella HOM05D006435 ORTHO05D008262 1.4e-51 207.6 222 51.4
Solyc10g012245.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 1.3e-49 201.1 158 62.7
Ciclev10010273m.g Citrus clementina HOM05D006435 ORTHO05D008262 4.3e-45 186.0 158 62.0
ClCG11G014010 Citrullus lanatus HOM05D006435 ORTHO05D008262 1.6e-44 184.1 130 72.3
Ca_12811_v3 Cicer arietinum L. HOM05D006435 ORTHO05D008262 4.0e-43 179.5 143 65.7
Nitab4.5_0000052g0140 Nicotiana tabacum HOM05D006435 ORTHO05D008262 3.2e-40 169.9 226 46.0
PRCOL_00005434 Prasinoderma coloniale HOM05D006435 ORTHO05D008262 3.2e-40 169.9 183 47.5
Peaxi162Scf00523g00529 Petunia axillaris HOM05D006435 ORTHO05D008262 4.2e-40 169.5 131 66.4
PSO782G5630 Papaver somniferum HOM05D006435 ORTHO05D008262 5.5e-40 169.1 191 47.1
Glyma.14G141900 Glycine max HOM05D006435 ORTHO05D008262 2.7e-39 166.8 100 81.0
Cre16.g664801 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D008262 1.8e-38 164.1 190 45.3
MBI01_g28043_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 9.6e-37 158.3 193 50.8
PSO782G2728 Papaver somniferum HOM05D006435 ORTHO05D008262 5.5e-32 142.5 186 43.0
Sabra18G0038100 Salix brachista HOM05D006435 ORTHO05D008262 6.1e-31 139.0 110 66.4
Solyc10g012295.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 1.0e-22 111.7 91 62.6
PSO832G3154 Papaver somniferum HOM05D006435 ORTHO05D008262 1.5e-18 97.8 196 35.2
FAN15G2703 Fragaria x ananassa HOM05D006435 ORTHO05D008262 1.0e-17 95.1 65 63.1
MD08G1118500 Malus domestica HOM05D006435 ORTHO05D008262 1.3e-17 94.7 77 61.0
Peaxi162Scf00523g00528 Petunia axillaris HOM05D006435 ORTHO05D008262 1.3e-17 94.7 80 57.5
A02p39610 Brassica napus HOM05D006435 ORTHO05D008262 2.9e-17 93.6 81 55.6
MBI01_g46977_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 2.6e-13 80.5 94 52.1
Cre11.g467648 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D143948 3.8e-09 66.6 90 37.8
Cre12.g546200 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D146483 1.5e-08 64.7 161 29.2
Lalb_Chr14g0373771 Lupinus albus HOM05D000659 ORTHO05D000505 4.7e-07 59.7 157 32.5
Os04g0569300 Oryza sativa ssp. japonica HOM05D000659 ORTHO05D000505 8.0e-07 58.9 93 35.5
Hund04948 Selenicereus undatus HOM05D000659 ORTHO05D000505 1.8e-06 57.8 150 30.7
Lalb_Chr22g0350911 Lupinus albus HOM05D000659 ORTHO05D000505 3.0e-06 57.0 163 31.3
Zm00001eb164560 Zea mays HOM05D000659 ORTHO05D000505 4.0e-06 56.6 144 29.9
Os11g0704800 Oryza sativa ssp. japonica HOM05D000659 ORTHO05D000505 5.2e-06 56.2 150 32.7
AT1G12750 Arabidopsis thaliana HOM05D000659 ORTHO05D000505 6.7e-06 55.8 89 39.3
Nitab4.5_0004843g0020 Nicotiana tabacum HOM05D000659 ORTHO05D000505 6.7e-06 55.8 150 30.7
HPP92_026923 Vanilla planifolia HOM05D000659 ORTHO05D000505 6.7e-06 55.8 146 31.5
Nitab4.5_0002107g0030 Nicotiana tabacum HOM05D000659 ORTHO05D000505 8.8e-06 55.5 150 30.7
vmacro08649 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 8.8e-06 55.5 142 30.3


User provided reference genes

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