Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 1.8e-117 426.0 222 100.0
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 7.7e-81 304.3 227 70.0
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.6e-78 295.4 228 69.3
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 2.3e-77 292.7 211 72.5
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.0e-76 289.7 228 68.0
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 2.6e-76 289.3 210 71.4
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 3.3e-76 288.9 221 69.2
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 4.4e-76 288.5 192 75.5
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 5.7e-76 288.1 220 69.5
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 7.5e-76 287.7 173 79.2
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 7.5e-76 287.7 192 76.6
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 1.3e-75 287.0 192 75.5
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 2.2e-75 286.2 192 73.4
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 2.8e-75 285.8 202 71.3
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.8e-75 285.8 211 71.6
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 6.3e-75 284.6 203 71.4
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 6.3e-75 284.6 226 67.3
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 8.2e-75 284.3 225 68.4
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 8.2e-75 284.3 225 68.4
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 1.1e-74 283.9 211 68.2
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.1e-74 283.9 225 68.4
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.4e-74 283.5 225 65.8
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.4e-74 282.7 203 70.4
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 2.4e-74 282.7 186 75.8
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 4.1e-74 282.0 223 67.7
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 4.1e-74 282.0 174 78.2
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 7.0e-74 281.2 192 74.0
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 7.0e-74 281.2 219 67.6
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 7.0e-74 281.2 192 74.5
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 9.1e-74 280.8 203 70.4
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 9.1e-74 280.8 211 67.3
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 9.1e-74 280.8 208 67.3
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 9.1e-74 280.8 224 66.5
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 1.2e-73 280.4 211 69.7
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 1.2e-73 280.4 192 73.4
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 1.6e-73 280.0 208 66.8
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 1.6e-73 280.0 223 66.4
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 1.6e-73 280.0 209 69.9
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 2.0e-73 279.6 223 67.3
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 2.7e-73 279.3 192 71.4
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 2.7e-73 279.3 192 72.9
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.7e-73 279.3 225 64.9
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 2.7e-73 279.3 192 72.9
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 2.7e-73 279.3 192 72.4
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 2.7e-73 279.3 192 72.4
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 2.7e-73 279.3 222 66.7
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.7e-73 279.3 182 74.7
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 3.5e-73 278.9 212 68.4
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 4.5e-73 278.5 177 75.7
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 4.5e-73 278.5 173 78.6
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 4.5e-73 278.5 223 66.4
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 5.9e-73 278.1 177 76.3
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 5.9e-73 278.1 173 78.0
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 5.9e-73 278.1 177 76.3
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 5.9e-73 278.1 177 76.3
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 5.9e-73 278.1 177 76.3
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 5.9e-73 278.1 223 66.4
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.9e-73 278.1 223 65.0
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.9e-73 278.1 192 70.3
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 5.9e-73 278.1 223 65.0
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 5.9e-73 278.1 210 68.6
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 5.9e-73 278.1 173 76.9
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 7.7e-73 277.7 223 67.3
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 7.7e-73 277.7 223 66.4
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 1.0e-72 277.3 173 78.0
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 1.0e-72 277.3 173 78.0
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 1.0e-72 277.3 224 65.2
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.3e-72 276.9 192 71.9
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 1.3e-72 276.9 223 66.4
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 1.7e-72 276.6 192 72.4
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 1.7e-72 276.6 208 67.3
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 1.7e-72 276.6 208 67.3
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 2.2e-72 276.2 175 77.1
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 2.2e-72 276.2 223 66.4
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 2.2e-72 276.2 209 68.9
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 2.2e-72 276.2 211 65.9
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 2.9e-72 275.8 173 77.5
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 2.9e-72 275.8 192 71.4
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 2.9e-72 275.8 221 66.1
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 3.8e-72 275.4 225 66.7
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 3.8e-72 275.4 192 71.9
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 3.8e-72 275.4 173 76.3
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 3.8e-72 275.4 211 67.8
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 5.0e-72 275.0 210 67.6
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 6.5e-72 274.6 192 72.4
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 6.5e-72 274.6 236 62.3
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 6.5e-72 274.6 186 73.1
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 8.5e-72 274.2 225 66.7
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 8.5e-72 274.2 210 67.6
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 8.5e-72 274.2 225 65.3
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 8.5e-72 274.2 162 81.5
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 8.5e-72 274.2 222 66.2
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.1e-71 273.9 223 65.9
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.1e-71 273.9 222 64.9
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 1.5e-71 273.5 221 65.2
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.9e-71 273.1 222 65.8
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.9e-71 273.1 222 65.8
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.9e-71 273.1 222 63.1
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 2.5e-71 272.7 222 64.9
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 3.2e-71 272.3 210 65.7
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 3.2e-71 272.3 209 65.1
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 3.2e-71 272.3 173 78.0
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 3.2e-71 272.3 192 70.8
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 4.2e-71 271.9 223 66.4
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 4.2e-71 271.9 173 74.6
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 4.2e-71 271.9 222 65.8
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 4.2e-71 271.9 184 72.3
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 5.5e-71 271.6 223 65.9
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 5.5e-71 271.6 173 76.9
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 5.5e-71 271.6 173 76.9
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 7.2e-71 271.2 173 74.6
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 7.2e-71 271.2 222 64.4
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 9.4e-71 270.8 225 65.3
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 9.4e-71 270.8 225 67.1
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 1.2e-70 270.4 231 64.5
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 1.6e-70 270.0 173 75.1
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.6e-70 270.0 218 63.3
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 2.1e-70 269.6 205 65.4
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 2.1e-70 269.6 225 65.3
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 2.1e-70 269.6 165 78.2
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 2.7e-70 269.2 205 69.3
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 4.7e-70 268.5 226 65.9
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 6.1e-70 268.1 226 65.5
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 6.1e-70 268.1 208 65.9
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 8.0e-70 267.7 188 71.3
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 8.0e-70 267.7 225 64.9
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 5.2e-69 265.0 222 64.4
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 1.2e-68 263.8 225 63.6
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 1.2e-68 263.8 222 63.1
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 2.0e-68 263.1 192 70.8
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.8e-64 248.8 162 74.7
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 7.2e-63 244.6 186 67.2
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 8.3e-59 231.1 191 63.9
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 2.8e-46 189.5 219 49.3
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 4.0e-45 185.7 177 56.5
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.3e-43 180.6 150 59.3
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.0e-40 171.0 209 48.8
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 2.3e-40 169.9 192 51.6
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 4.7e-38 162.2 127 64.6
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.1e-30 136.7 142 57.0
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 1.8e-29 133.7 87 74.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 2.4e-13 80.1 58 69.0
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.3e-13 79.0 56 66.1
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 5.3e-13 79.0 56 66.1


User provided reference genes

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