Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 3.6e-269 931.0 476 100.0
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 2.5e-105 386.7 299 62.9
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 1.6e-104 384.0 342 56.4
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 2.3e-90 337.0 285 55.8
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.1e-88 330.5 338 48.2
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 3.7e-88 329.7 333 48.3
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.1e-87 328.2 342 47.4
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 2.4e-87 327.0 325 47.7
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 3.1e-87 326.6 333 47.7
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 9.0e-87 325.1 337 46.6
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 2.0e-86 323.9 337 46.6
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 2.6e-86 323.6 338 46.2
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 4.5e-86 322.8 337 46.6
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 5.9e-86 322.4 277 54.2
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 5.9e-86 322.4 325 45.8
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 7.6e-86 322.0 351 46.7
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.3e-85 321.2 288 52.4
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 2.2e-85 320.5 340 46.5
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 2.9e-85 320.1 326 46.6
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.8e-85 319.7 332 48.2
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 3.8e-85 319.7 339 46.6
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 5.0e-85 319.3 339 46.3
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 5.0e-85 319.3 336 45.5
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 6.5e-85 318.9 324 46.9
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 8.5e-85 318.5 338 45.6
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 1.1e-84 318.2 340 46.2
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 1.1e-84 318.2 326 46.9
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 1.9e-84 317.4 340 45.6
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.9e-84 317.4 330 46.7
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 1.9e-84 317.4 278 52.2
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 2.5e-84 317.0 340 46.2
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.5e-84 317.0 324 47.5
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 4.2e-84 316.2 327 47.1
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 5.5e-84 315.8 339 46.3
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 7.2e-84 315.5 324 46.9
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 9.3e-84 315.1 328 47.6
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.2e-83 314.7 340 45.9
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 2.1e-83 313.9 329 46.5
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 2.1e-83 313.9 340 46.2
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 3.6e-83 313.2 327 46.8
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 6.1e-83 312.4 288 52.4
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 7.9e-83 312.0 328 45.4
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 7.9e-83 312.0 337 44.8
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 7.9e-83 312.0 326 46.0
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.0e-82 311.6 323 46.1
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.8e-82 310.8 327 45.6
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 1.8e-82 310.8 367 44.4
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 2.3e-82 310.5 333 46.5
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 3.0e-82 310.1 327 45.9
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 3.9e-82 309.7 312 50.0
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 3.9e-82 309.7 326 46.0
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 5.1e-82 309.3 333 46.2
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 5.1e-82 309.3 324 46.0
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 5.1e-82 309.3 277 52.0
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 5.1e-82 309.3 325 47.4
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 8.7e-82 308.5 323 46.1
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 8.7e-82 308.5 324 47.2
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 1.1e-81 308.1 334 44.6
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 1.5e-81 307.8 321 46.1
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 1.5e-81 307.8 323 47.1
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.9e-81 307.4 321 45.2
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 2.5e-81 307.0 322 46.6
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 4.3e-81 306.2 277 51.6
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 5.7e-81 305.8 350 45.1
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 5.7e-81 305.8 274 51.1
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 5.7e-81 305.8 332 46.7
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 5.7e-81 305.8 332 46.4
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 5.7e-81 305.8 333 45.9
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 5.7e-81 305.8 334 44.3
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 5.7e-81 305.8 277 52.0
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 1.3e-80 304.7 327 45.6
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 1.3e-80 304.7 337 43.0
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 1.6e-80 304.3 358 43.6
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 4.8e-80 302.8 333 45.0
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 6.3e-80 302.4 325 48.0
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 6.3e-80 302.4 309 46.9
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 8.2e-80 302.0 324 45.4
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 1.1e-79 301.6 326 44.8
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 1.4e-79 301.2 327 45.0
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.8e-79 300.8 312 46.8
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.4e-79 300.4 327 44.0
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 2.4e-79 300.4 330 44.8
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.3e-79 299.3 311 45.3
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 6.9e-79 298.9 321 45.2
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 1.5e-78 297.7 314 46.2
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 3.4e-78 296.6 317 47.0
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 4.5e-78 296.2 329 44.1
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 4.5e-78 296.2 325 44.0
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 5.9e-78 295.8 280 50.4
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 1.0e-77 295.0 324 45.4
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.7e-77 294.3 316 44.6
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 2.2e-77 293.9 337 44.8
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 2.9e-77 293.5 313 43.8
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.4e-76 291.2 323 44.0
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.4e-76 291.2 261 51.0
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 5.5e-76 289.3 240 54.6
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 2.7e-75 287.0 333 43.5
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 2.3e-74 283.9 343 42.0
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 3.3e-73 280.0 317 44.2
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 6.9e-71 272.3 324 42.6
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 3.4e-70 270.0 260 48.5
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 7.7e-70 268.9 309 43.7
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 5.0e-69 266.2 248 53.2
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 1.9e-68 264.2 273 48.4
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 2.5e-68 263.8 358 41.1
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 2.5e-68 263.8 278 43.9
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 5.5e-68 262.7 275 45.5
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 7.2e-68 262.3 265 47.2
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 7.2e-68 262.3 265 47.2
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.2e-67 261.5 277 43.7
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.4e-66 258.1 261 47.1
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 3.9e-66 256.5 260 46.2
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 6.7e-66 255.8 275 45.1
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.6e-65 253.8 320 40.9
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 3.3e-65 253.4 284 43.3
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 9.7e-65 251.9 335 42.4
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 9.7e-65 251.9 261 47.1
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 7.0e-63 245.7 350 38.3
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 5.9e-62 242.7 274 43.1
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 3.8e-61 240.0 326 39.9
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 2.1e-59 234.2 281 43.4
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 6.7e-58 229.2 257 47.1
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 2.4e-55 220.7 256 43.4
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.0e-54 217.6 206 51.0
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 5.9e-54 216.1 200 52.5
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 1.9e-52 211.1 242 41.3
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 7.2e-52 209.1 289 37.7
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.5e-49 199.1 306 39.5
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 7.0e-47 192.6 155 55.5
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.3e-45 187.6 143 58.0
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 6.5e-45 186.0 185 46.5
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 5.2e-42 176.4 174 47.1
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 3.7e-40 170.2 287 36.9
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 5.0e-37 159.8 346 32.1
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 6.1e-35 152.9 139 50.4
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 1.8e-34 151.4 209 41.1
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 8.9e-34 149.1 207 40.6
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.4e-33 147.1 213 41.3
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.2e-31 140.6 168 42.9
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.9e-28 131.3 131 48.1
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 4.4e-25 120.2 283 30.7
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 5.8e-25 119.8 222 35.6
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 3.7e-16 90.5 79 53.2
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 1.0e-13 82.4 126 32.5
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 7.3e-12 76.3 114 36.0
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 2.0e-09 68.2 53 54.7
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 4.1e-07 60.5 71 38.0


User provided reference genes

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