Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 0.0e+00 1351.3 730 100.0
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 4.4e-157 559.3 655 50.7
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.1e-147 528.1 598 47.8
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 5.4e-131 472.6 732 42.5
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 2.0e-130 470.7 732 41.8
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 2.0e-130 470.7 684 44.3
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 3.5e-130 469.9 601 45.1
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 6.6e-129 465.7 614 45.4
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 4.3e-128 463.0 686 44.0
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 5.6e-128 462.6 607 45.0
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 9.5e-128 461.8 705 42.6
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.2e-127 461.5 676 43.5
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 2.1e-127 460.7 692 42.8
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 8.0e-127 458.8 664 42.6
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 8.0e-127 458.8 645 43.4
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.0e-126 458.4 664 42.0
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.4e-126 458.0 681 45.1
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 3.1e-126 456.8 675 41.8
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 5.2e-126 456.1 658 43.5
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 6.8e-126 455.7 678 42.6
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 8.9e-126 455.3 648 42.1
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 1.5e-125 454.5 629 43.2
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.0e-125 454.1 633 44.1
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 3.4e-125 453.4 651 44.2
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 4.4e-125 453.0 633 44.1
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 9.8e-125 451.8 635 43.8
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.3e-124 451.4 671 42.0
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.7e-124 451.1 705 44.0
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.7e-124 451.1 675 43.4
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.7e-124 451.1 678 42.0
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.2e-124 450.7 682 41.6
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 4.9e-124 449.5 675 43.6
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 4.9e-124 449.5 675 43.4
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 6.4e-124 449.1 658 43.9
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 8.3e-124 448.7 675 43.0
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 1.9e-123 447.6 674 41.8
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 4.1e-123 446.4 677 41.4
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 9.2e-123 445.3 654 43.4
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 9.2e-123 445.3 725 41.0
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 2.7e-122 443.7 659 42.3
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 2.7e-122 443.7 653 43.3
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 2.7e-122 443.7 597 44.2
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 6.0e-122 442.6 679 43.9
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 7.8e-122 442.2 657 41.1
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 1.0e-121 441.8 653 43.2
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 1.3e-121 441.4 667 40.5
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 1.7e-121 441.0 679 40.2
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 2.3e-121 440.7 679 40.2
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 2.3e-121 440.7 656 41.6
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 2.3e-121 440.7 591 43.7
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 2.3e-121 440.7 662 41.8
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 3.0e-121 440.3 616 43.2
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 3.0e-121 440.3 646 41.5
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 3.9e-121 439.9 677 41.9
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 5.0e-121 439.5 692 42.2
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.1e-120 438.3 678 40.1
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.1e-120 438.3 678 41.2
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 1.5e-120 438.0 696 42.1
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 2.5e-120 437.2 689 40.5
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 3.3e-120 436.8 680 40.9
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 3.3e-120 436.8 674 40.7
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 4.3e-120 436.4 661 42.5
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 9.5e-120 435.3 651 42.1
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 2.8e-119 433.7 653 43.2
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 8.0e-119 432.2 656 42.2
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 1.1e-118 431.8 632 43.2
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.1e-118 431.8 696 42.2
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.4e-118 431.4 667 41.5
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 5.2e-118 429.5 686 40.8
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.2e-117 428.3 584 46.4
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 1.5e-117 427.9 701 40.5
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 1.5e-117 427.9 671 41.7
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 1.5e-117 427.9 654 40.5
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 2.6e-117 427.2 667 40.9
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 7.5e-117 425.6 711 38.4
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 9.8e-117 425.2 649 42.4
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 1.3e-116 424.9 644 41.5
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 2.2e-116 424.1 679 40.1
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 2.9e-116 423.7 632 43.2
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 1.4e-115 421.4 673 41.5
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 2.4e-115 420.6 694 40.5
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 2.7e-114 417.2 699 41.1
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.5e-112 410.6 675 40.4
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.5e-112 410.6 568 43.5
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.6e-111 407.9 681 40.4
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 1.4e-110 404.8 687 40.9
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 1.8e-110 404.4 687 40.9
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 2.6e-109 400.6 699 38.5
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 9.9e-109 398.7 700 38.9
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 9.9e-109 398.7 539 45.3
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 2.9e-108 397.1 648 39.5
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.9e-108 396.4 648 40.0
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 6.4e-108 396.0 674 39.5
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.4e-107 394.8 627 39.4
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 3.9e-105 386.7 646 37.2
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 6.6e-105 386.0 662 38.7
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 4.3e-104 383.3 642 40.0
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.4e-99 368.2 664 38.0
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 1.4e-99 368.2 682 37.1
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.9e-99 367.9 620 43.4
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 8.7e-97 359.0 651 37.6
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.4e-94 350.9 633 38.7
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 5.3e-94 349.7 600 40.0
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.5e-93 348.2 652 38.0
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.3e-84 318.5 402 46.8
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 9.3e-83 312.4 683 37.0
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 4.6e-82 310.1 672 36.6
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 3.1e-78 297.4 348 48.0
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 2.2e-68 264.6 737 31.9
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 7.1e-67 259.6 420 41.7
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.6e-66 258.5 646 30.8
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.5e-61 240.4 241 52.7
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 1.2e-58 232.3 635 31.5
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 1.7e-55 221.9 565 30.6
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 1.0e-52 212.6 640 28.6
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 1.4e-51 208.8 337 39.8
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 2.5e-51 208.0 304 37.2
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 5.1e-49 200.3 340 38.5
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.1e-43 182.6 319 39.5
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 4.8e-39 167.2 448 30.8
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 5.3e-30 137.1 242 40.5
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.5e-27 129.0 411 27.7
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 4.7e-26 124.0 95 57.9
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 2.6e-24 118.2 175 40.0
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.4e-24 117.5 157 42.0
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 1.0e-20 106.3 95 57.9
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 1.0e-17 96.3 266 29.7
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 1.8e-17 95.5 274 29.2
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 2.7e-13 81.6 116 42.2
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 3.5e-13 81.3 128 35.2
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 2.3e-12 78.6 128 34.4
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 3.9e-12 77.8 154 35.1
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 1.5e-11 75.9 137 35.0
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 1.2e-10 72.8 89 44.9
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.0e-09 69.7 163 33.1
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 1.4e-09 69.3 88 42.0
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.1e-09 68.2 197 33.5
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 5.4e-06 57.4 44 56.8
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 5.4e-06 57.4 46 58.7


User provided reference genes

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