Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 5.0e-205 717.6 378 100.0
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 3.4e-97 359.4 318 60.1
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 7.6e-97 358.2 314 59.6
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 3.7e-91 339.3 319 56.4
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 3.7e-91 339.3 320 58.1
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 2.0e-89 333.6 313 58.1
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 2.6e-89 333.2 313 58.8
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 5.9e-89 332.0 312 58.7
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 1.0e-88 331.3 313 57.5
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 2.2e-88 330.1 312 58.3
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 2.2e-88 330.1 318 55.7
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 2.2e-88 330.1 313 57.5
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 2.9e-88 329.7 313 57.2
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 2.9e-88 329.7 312 58.0
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 3.8e-88 329.3 313 57.2
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 3.8e-88 329.3 313 57.2
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 4.2e-87 325.9 306 58.2
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 6.1e-86 322.0 313 56.5
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 5.1e-85 318.9 306 56.9
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 1.1e-84 317.8 305 55.7
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.3e-83 314.3 301 58.1
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 2.2e-83 313.5 302 57.6
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.2e-83 313.5 300 57.7
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 2.2e-83 313.5 300 57.7
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 8.2e-83 311.6 302 56.6
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.4e-82 310.8 301 57.1
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 5.3e-82 308.9 301 57.1
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 7.7e-81 305.1 309 57.3
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 1.0e-80 304.7 302 56.0
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 1.3e-80 304.3 303 56.4
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.3e-80 304.3 302 56.0
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.1e-79 301.2 299 57.5
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.4e-79 300.8 297 55.9
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 1.9e-79 300.4 329 54.1
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 1.9e-79 300.4 295 56.9
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 3.2e-79 299.7 298 56.0
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.2e-79 299.3 297 54.5
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 4.2e-79 299.3 295 54.6
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 7.2e-79 298.5 296 55.1
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 9.4e-79 298.1 300 55.7
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 1.2e-78 297.7 300 55.7
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 3.6e-78 296.2 303 55.4
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 4.7e-78 295.8 294 56.5
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.4e-77 294.3 293 54.9
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.8e-77 293.9 293 54.6
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.8e-77 293.9 293 57.3
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 1.8e-77 293.9 293 56.7
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 2.3e-77 293.5 293 55.6
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 2.3e-77 293.5 302 57.3
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 2.3e-77 293.5 294 56.1
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 3.0e-77 293.1 295 56.9
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.9e-77 292.7 295 56.6
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.9e-77 292.7 295 56.6
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 3.9e-77 292.7 293 57.3
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 6.7e-77 292.0 295 56.9
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 6.7e-77 292.0 295 55.3
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 6.7e-77 292.0 297 56.2
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.8e-77 291.6 295 56.6
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.8e-77 291.6 295 56.6
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.1e-76 291.2 296 55.4
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 1.1e-76 291.2 302 54.3
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 1.1e-76 291.2 293 56.0
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 1.5e-76 290.8 294 54.4
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 2.6e-76 290.0 295 55.9
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 3.3e-76 289.7 300 55.0
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 3.3e-76 289.7 294 55.4
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 5.7e-76 288.9 317 52.4
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 5.7e-76 288.9 293 54.9
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 9.7e-76 288.1 294 54.8
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 1.3e-75 287.7 295 54.2
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 1.7e-75 287.3 298 54.7
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 2.2e-75 287.0 300 54.3
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 4.8e-75 285.8 294 55.1
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 6.3e-75 285.4 300 54.0
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 1.1e-74 284.6 294 55.4
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 1.1e-74 284.6 295 54.2
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.1e-74 284.6 293 55.3
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 4.1e-74 282.7 295 53.9
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 7.0e-74 282.0 303 52.5
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 7.0e-74 282.0 293 55.3
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.6e-73 280.8 294 54.8
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 2.0e-73 280.4 295 53.9
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 2.6e-73 280.0 294 53.1
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 2.6e-73 280.0 311 52.4
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 3.5e-73 279.6 315 52.4
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 7.7e-73 278.5 295 53.2
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 7.7e-73 278.5 295 54.2
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 1.3e-72 277.7 295 52.9
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.7e-72 277.3 323 51.4
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 2.2e-72 276.9 287 55.1
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 3.8e-72 276.2 295 53.6
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 7.2e-71 271.9 293 53.6
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 1.6e-70 270.8 296 52.0
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 3.6e-70 269.6 293 54.3
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 5.2e-69 265.8 298 51.0
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 5.7e-68 262.3 300 50.7
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 7.5e-68 261.9 337 48.4
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 9.7e-68 261.5 293 52.6
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 6.3e-67 258.8 269 51.3
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 3.2e-63 246.5 300 49.0
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.6e-62 244.2 247 56.3
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 4.5e-57 226.1 245 52.7
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 6.5e-56 222.2 300 47.0
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 1.3e-51 208.0 328 43.9
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 5.4e-42 176.0 206 50.5
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 2.7e-41 173.7 185 49.2
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 1.1e-39 168.3 345 34.8
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 2.8e-38 163.7 308 38.0
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 3.6e-38 163.3 457 28.7
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 6.8e-37 159.1 301 38.2
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 3.4e-36 156.8 330 34.8
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 1.0e-32 145.2 190 46.8
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 2.3e-32 144.1 296 37.8
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 2.3e-32 144.1 329 34.0
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 1.1e-31 141.7 190 46.3
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 4.3e-31 139.8 127 60.6
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 3.6e-30 136.7 124 60.5
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 8.1e-30 135.6 245 39.2
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 2.9e-27 127.1 86 74.4
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 3.5e-25 120.2 104 60.6
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.3e-24 117.5 97 63.9
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 1.7e-19 101.3 167 38.9
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.8e-19 100.1 93 59.1
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 1.4e-18 98.2 69 69.6
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.2e-18 97.1 154 39.6
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 5.1e-16 89.7 68 66.2
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 1.1e-15 88.6 170 38.8
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 3.3e-15 87.0 217 32.7
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 4.3e-15 86.7 110 46.4
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 5.8e-12 76.3 120 40.0
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 1.7e-11 74.7 74 52.7
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 1.1e-10 72.0 93 44.1
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 4.6e-09 66.6 81 51.9
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 1.1e-07 62.0 151 31.8
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 2.1e-06 57.8 38 73.7
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.8e-06 57.4 71 46.5
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 3.6e-06 57.0 64 45.3


User provided reference genes

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