Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 6.4e-263 910.2 461 100.0
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.8e-161 573.2 441 64.2
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.2e-157 560.5 437 62.7
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 1.6e-157 560.1 447 63.8
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 3.6e-157 558.9 447 63.1
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 3.6e-157 558.9 460 62.4
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 4.7e-157 558.5 437 63.4
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 4.7e-157 558.5 456 60.3
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 8.0e-157 557.8 457 61.7
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.0e-156 557.4 465 60.9
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 1.0e-156 557.4 447 64.0
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 1.0e-156 557.4 447 63.5
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 3.0e-156 555.8 455 62.0
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 3.0e-156 555.8 434 63.4
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 4.0e-156 555.4 450 62.4
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 5.2e-156 555.1 452 63.3
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 8.9e-156 554.3 429 65.0
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 1.2e-155 553.9 425 65.2
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 1.2e-155 553.9 452 63.1
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 1.5e-155 553.5 456 61.8
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 5.7e-155 551.6 457 61.3
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 5.7e-155 551.6 449 62.4
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 7.5e-155 551.2 444 62.4
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 9.8e-155 550.8 445 62.5
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 9.8e-155 550.8 453 61.1
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.3e-154 550.4 453 63.1
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 1.3e-154 550.4 456 61.6
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 2.2e-154 549.7 434 64.5
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 3.7e-154 548.9 446 61.9
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 4.9e-154 548.5 456 62.7
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 4.9e-154 548.5 447 61.7
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 8.3e-154 547.7 444 62.4
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 8.3e-154 547.7 456 61.2
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.4e-153 547.0 459 61.2
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 1.8e-153 546.6 449 62.6
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.4e-153 546.2 459 60.1
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 3.2e-153 545.8 456 61.2
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 5.4e-153 545.0 460 61.7
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 5.4e-153 545.0 460 61.7
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 7.0e-153 544.7 433 62.1
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 9.2e-153 544.3 459 60.3
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 2.0e-152 543.1 446 61.7
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 2.7e-152 542.7 449 61.7
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 4.6e-152 542.0 439 62.0
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.6e-152 542.0 459 60.3
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 4.6e-152 542.0 459 61.4
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 7.8e-152 541.2 459 60.1
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 1.0e-151 540.8 434 62.2
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 1.3e-151 540.4 459 61.0
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 1.3e-151 540.4 459 61.0
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 1.7e-151 540.0 467 59.3
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.0e-151 539.3 439 61.7
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 3.0e-151 539.3 449 60.6
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 3.9e-151 538.9 450 61.3
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 5.0e-151 538.5 456 59.9
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 8.6e-151 537.7 459 59.9
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 1.1e-150 537.3 431 62.2
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 1.1e-150 537.3 454 61.0
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.5e-150 537.0 455 59.1
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 3.3e-150 535.8 468 60.0
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 3.3e-150 535.8 434 61.5
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 4.3e-150 535.4 462 58.7
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 4.3e-150 535.4 459 60.6
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 7.3e-150 534.6 440 62.3
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 1.6e-149 533.5 451 60.3
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.6e-149 533.5 456 60.7
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 1.6e-149 533.5 459 60.1
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 2.1e-149 533.1 456 59.4
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 2.8e-149 532.7 453 60.7
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 2.8e-149 532.7 453 60.7
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.6e-149 532.3 465 58.7
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 3.6e-149 532.3 462 60.6
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 3.6e-149 532.3 452 60.2
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 4.7e-149 531.9 459 59.9
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 6.2e-149 531.6 455 58.9
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 1.0e-148 530.8 483 58.0
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 1.8e-148 530.0 424 62.0
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 3.1e-148 529.3 460 57.8
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 3.1e-148 529.3 490 56.3
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 3.1e-148 529.3 455 58.0
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 5.2e-148 528.5 460 57.4
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 8.9e-148 527.7 456 58.3
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.5e-147 526.9 425 62.4
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.5e-147 526.9 468 58.3
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 1.5e-147 526.9 452 60.2
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 7.5e-147 524.6 455 59.1
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 7.5e-147 524.6 456 59.9
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 7.5e-147 524.6 464 59.3
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 4.1e-145 518.8 478 55.4
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 7.0e-145 518.1 510 55.7
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.7e-144 516.2 485 55.7
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.7e-144 516.2 462 57.6
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 2.7e-144 516.2 445 60.9
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.3e-143 513.1 459 58.0
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 1.5e-142 510.4 459 58.4
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 1.9e-142 510.0 444 58.1
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 3.6e-141 505.8 542 51.3
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 1.8e-140 503.4 444 57.9
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 4.1e-137 492.3 459 56.6
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 5.4e-137 491.9 439 57.9
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 2.7e-136 489.6 599 45.9
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 1.9e-134 483.4 444 54.5
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 1.7e-130 470.3 374 62.8
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 6.0e-128 461.8 385 61.3
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 1.0e-127 461.1 376 60.9
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 3.0e-127 459.5 361 63.7
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.4e-124 449.9 360 63.3
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 2.9e-114 416.4 462 50.9
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 2.1e-109 400.2 408 55.4
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 3.1e-108 396.4 396 55.1
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 6.0e-104 382.1 472 46.8
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 5.6e-102 375.6 511 43.2
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 6.0e-96 355.5 499 43.1
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 3.9e-95 352.8 272 62.1
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 1.9e-94 350.5 429 47.1
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 5.7e-94 349.0 461 45.6
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 2.4e-92 343.6 279 61.3
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 2.5e-89 333.6 461 39.5
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 9.3e-89 331.6 286 59.8
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 8.7e-87 325.1 255 64.7
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 3.6e-80 303.1 253 56.5
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.8e-71 274.2 243 60.1
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 2.2e-58 230.7 243 53.5
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.9e-58 230.3 243 53.1
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 4.7e-56 223.0 237 53.2
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 2.7e-51 207.2 204 58.8
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 8.3e-45 185.7 136 68.4
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 4.5e-43 179.9 160 56.9
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 7.8e-43 179.1 180 48.9
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.3e-42 177.6 159 56.6
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 4.3e-41 173.3 180 54.4
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 5.6e-41 172.9 237 45.1
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.6e-32 144.8 129 56.6
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.8e-32 144.1 106 68.9
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.8e-32 144.1 112 67.0
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 8.0e-32 142.5 112 67.9
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 3.4e-30 137.1 108 65.7
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 2.2e-29 134.4 106 68.9
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 1.2e-27 128.6 90 71.1
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 6.6e-26 122.9 124 50.0
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 8.6e-18 95.9 102 52.0
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 1.9e-17 94.7 71 70.4
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 1.9e-17 94.7 71 70.4
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 1.9e-17 94.7 71 70.4
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 4.3e-17 93.6 99 48.5
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 6.2e-16 89.7 97 52.6
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.8e-15 88.2 90 50.0
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 3.8e-13 80.5 44 86.4
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 3.8e-13 80.5 315 27.0
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 4.9e-13 80.1 97 48.5
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 1.0e-10 72.4 68 55.9
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 3.9e-10 70.5 177 33.9
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 1.9e-09 68.2 38 81.6
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 3.3e-09 67.4 70 51.4
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 1.1e-07 62.4 149 35.6
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 1.4e-07 62.0 224 27.7
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 6.9e-07 59.7 242 25.6
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.2e-06 58.9 37 75.7
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 3.4e-06 57.4 37 73.0


User provided reference genes

Program Settings