Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 0.0e+00 1238.4 705 100.0
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.1e-184 649.4 662 64.5
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 3.3e-170 602.8 690 59.1
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 2.0e-167 593.6 676 59.6
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 8.8e-163 578.2 661 55.7
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 8.8e-163 578.2 684 55.0
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 2.0e-162 577.0 696 57.2
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 2.2e-161 573.5 682 56.7
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 6.3e-161 572.0 711 57.7
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 6.3e-161 572.0 701 57.1
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 6.3e-161 572.0 693 56.7
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.8e-158 562.8 715 56.2
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 9.4e-157 558.1 690 56.8
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 2.7e-156 556.6 687 56.6
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 1.0e-155 554.7 688 57.4
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 1.4e-155 554.3 687 55.7
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.4e-155 554.3 687 55.7
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 1.4e-155 554.3 675 56.6
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 1.8e-155 553.9 687 55.7
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 1.8e-155 553.9 678 57.7
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.9e-155 552.7 667 59.7
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 3.9e-155 552.7 633 59.2
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 2.0e-154 550.4 675 56.4
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 3.3e-154 549.7 675 56.3
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 3.3e-154 549.7 675 56.3
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 9.7e-154 548.1 687 55.3
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.7e-153 547.4 572 64.2
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.8e-153 546.6 689 55.4
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 3.7e-153 546.2 677 57.2
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.8e-153 545.8 700 55.3
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.4e-152 544.3 698 54.4
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.8e-152 543.9 697 55.1
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 1.8e-152 543.9 692 51.2
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 2.4e-152 543.5 695 54.5
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 3.1e-152 543.1 681 54.8
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 1.2e-151 541.2 687 54.4
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.6e-151 540.8 675 55.4
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.6e-151 540.8 615 60.3
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.6e-151 540.8 694 51.2
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 2.6e-151 540.0 688 54.9
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 4.5e-151 539.3 690 56.1
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 5.9e-151 538.9 673 55.4
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 1.7e-150 537.3 677 55.5
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.7e-150 537.3 623 58.9
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 3.8e-150 536.2 673 55.1
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.8e-150 536.2 672 54.8
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 6.5e-150 535.4 711 54.6
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.1e-149 534.6 675 56.0
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 1.5e-149 534.3 702 54.7
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 7.2e-149 531.9 673 55.3
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 9.4e-149 531.6 705 53.0
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.4e-147 527.7 689 55.6
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 4.0e-147 526.2 674 56.5
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 1.5e-146 524.2 696 54.6
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 2.0e-146 523.9 675 55.9
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 2.6e-146 523.5 624 58.5
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 4.4e-146 522.7 683 55.1
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 4.4e-146 522.7 689 54.7
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 6.3e-145 518.8 673 53.9
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 1.8e-144 517.3 682 54.0
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 2.4e-144 516.9 688 55.5
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 3.1e-144 516.5 693 55.4
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 9.1e-144 515.0 699 53.1
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 9.1e-144 515.0 679 56.0
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.2e-143 514.6 565 61.6
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.6e-143 514.2 678 54.3
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.6e-143 514.2 671 55.9
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 2.0e-143 513.8 700 53.7
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 2.0e-143 513.8 636 57.2
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.9e-143 512.3 700 53.7
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 7.7e-143 511.9 686 52.6
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.0e-142 511.5 672 54.8
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.3e-142 511.1 700 48.3
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 2.2e-142 510.4 678 52.1
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 2.9e-142 510.0 673 54.2
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 3.8e-142 509.6 678 54.3
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.9e-141 507.3 642 56.4
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.9e-141 507.3 627 56.3
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 2.5e-141 506.9 697 53.1
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 1.6e-140 504.2 624 56.9
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 2.1e-140 503.8 694 48.7
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.1e-140 503.8 524 66.6
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 2.7e-140 503.4 724 41.3
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 2.7e-140 503.4 668 54.5
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 8.0e-140 501.9 700 52.7
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 8.0e-140 501.9 674 54.0
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 4.0e-139 499.6 619 55.9
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 6.8e-139 498.8 699 49.2
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.3e-137 494.6 686 49.9
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 1.7e-137 494.2 688 52.6
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 2.8e-137 493.4 699 48.9
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 4.8e-137 492.7 672 54.3
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 7.0e-136 488.8 688 52.2
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 7.0e-136 488.8 674 55.2
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 2.7e-135 486.9 691 52.1
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 4.5e-135 486.1 677 52.1
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 5.9e-135 485.7 668 53.3
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 3.8e-134 483.0 674 54.9
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 3.8e-134 483.0 674 55.0
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 5.0e-134 482.6 529 61.6
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 2.5e-133 480.3 627 56.0
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 3.6e-132 476.5 688 52.3
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 2.3e-131 473.8 695 51.4
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 2.3e-131 473.8 681 49.0
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.0e-130 470.7 689 52.4
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 7.5e-130 468.8 689 51.8
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 1.7e-129 467.6 678 52.9
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 1.1e-128 464.9 699 49.8
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 2.0e-127 460.7 701 49.9
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 2.0e-127 460.7 568 46.5
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 2.7e-127 460.3 618 54.4
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.7e-126 457.6 737 47.5
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 3.8e-126 456.4 721 49.4
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 8.9e-123 445.3 626 47.0
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.2e-119 434.9 689 46.0
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.1e-115 421.8 527 57.9
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 8.3e-105 385.6 481 59.7
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 4.6e-103 379.8 545 55.0
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.5e-101 374.0 271 67.9
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.8e-100 370.5 679 47.0
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 3.2e-96 357.1 507 54.6
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.5e-93 348.2 534 52.6
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.6e-92 344.7 527 52.4
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 4.7e-92 343.2 734 43.1
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 3.5e-87 327.0 480 48.5
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 5.1e-86 323.2 268 62.7
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.5e-82 311.6 456 40.6
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 6.2e-76 289.7 484 51.0
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 2.1e-68 264.6 251 55.0
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 5.3e-67 260.0 258 52.7
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 3.8e-65 253.8 328 45.1
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.1e-61 242.3 215 57.7
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.4e-59 235.3 307 65.5
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.4e-54 218.8 262 47.3
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 2.3e-54 218.0 218 52.8
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 3.8e-49 200.7 323 58.2
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 1.4e-46 192.2 186 52.7
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 2.0e-45 188.3 291 40.2
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 3.1e-43 181.0 571 35.9
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 2.0e-42 178.3 284 41.2
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-39 169.1 341 45.7
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 8.8e-38 162.9 123 63.4
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 2.2e-36 158.3 587 33.6
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 2.4e-35 154.8 181 50.8
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 3.1e-35 154.5 138 55.8
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 7.0e-35 153.3 314 34.4
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.2e-31 142.5 246 39.0
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 4.0e-30 137.5 293 57.7
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 1.5e-29 135.6 87 71.3
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 9.7e-29 132.9 111 57.7
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 9.7e-29 132.9 256 34.0
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 7.0e-27 126.7 111 55.9
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 7.7e-26 123.2 167 42.5
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 1.3e-25 122.5 184 39.1
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 2.2e-25 121.7 149 47.7
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.1e-15 87.0 96 45.8
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 8.0e-15 86.7 123 43.1
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.4e-14 85.9 87 49.4
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.4e-14 85.9 89 48.3
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 6.8e-14 83.6 202 35.1
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.6e-13 81.6 105 41.9
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-10 72.4 69 53.6
A02p18780 Brassica napus HOM05D003766 ORTHO05D004607 9.5e-08 63.2 82 47.6
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 9.5e-08 63.2 89 41.6
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.2e-07 62.8 52 55.8
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 3.6e-07 61.2 64 45.3
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 6.1e-07 60.5 48 56.2
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 1.4e-06 59.3 122 36.9
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 2.3e-06 58.5 59 45.8
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 2.3e-06 58.5 56 48.2


User provided reference genes

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