Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 0.0e+00 1592.0 841 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 7.8e-267 924.1 763 63.8
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.0e-263 911.8 787 62.0
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.4e-244 849.4 763 59.9
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.4e-244 849.4 766 59.7
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 1.0e-242 844.0 752 58.0
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 1.3e-242 843.6 749 59.1
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 2.3e-242 842.8 752 59.2
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 3.0e-242 842.4 749 58.5
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 3.9e-242 842.0 766 59.4
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.1e-241 840.5 758 58.8
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 1.5e-241 840.1 743 59.4
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 1.9e-241 839.7 745 58.9
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 5.6e-241 838.2 768 58.7
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 9.6e-241 837.4 757 59.0
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 1.2e-240 837.0 527 76.5
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.6e-240 836.6 751 58.9
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.6e-240 835.5 748 58.8
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 3.6e-240 835.5 751 57.9
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 4.7e-240 835.1 744 58.7
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 8.1e-240 834.3 733 59.6
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 8.1e-240 834.3 749 58.7
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 1.1e-239 833.9 728 59.2
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 1.4e-239 833.6 735 59.9
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 1.8e-239 833.2 752 58.2
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 2.4e-239 832.8 753 59.1
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 1.5e-238 830.1 750 57.9
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 2.0e-238 829.7 754 58.6
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 2.0e-238 829.7 753 58.4
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 7.6e-238 827.8 751 60.3
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 9.9e-238 827.4 753 58.3
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 9.9e-238 827.4 755 57.6
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 2.9e-237 825.9 726 61.7
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 3.8e-237 825.5 747 58.0
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.1e-236 823.9 750 58.1
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.9e-236 823.2 743 58.4
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 1.9e-236 823.2 749 57.0
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 9.3e-236 820.8 742 60.1
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 1.2e-235 820.5 739 57.8
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 2.1e-235 819.7 742 60.0
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 2.7e-235 819.3 756 57.7
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 7.8e-235 817.8 751 57.5
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 1.0e-234 817.4 750 57.3
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.3e-234 817.0 757 57.1
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 4.3e-233 812.0 748 57.4
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 5.6e-233 811.6 750 56.3
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 3.6e-232 808.9 748 56.7
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.1e-231 807.4 565 70.3
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 1.1e-231 807.4 748 57.6
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 3.1e-231 805.8 737 58.2
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 1.2e-230 803.9 738 57.5
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 6.4e-229 798.1 747 56.5
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 3.5e-227 792.3 751 55.0
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 4.6e-227 792.0 742 58.6
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 1.8e-226 790.0 779 55.2
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 2.3e-226 789.6 814 52.6
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 2.3e-226 789.6 771 54.3
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 2.5e-225 786.2 765 55.2
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 1.3e-224 783.9 735 56.5
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 1.1e-223 780.8 529 70.9
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.4e-223 779.6 762 54.7
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 1.5e-222 776.9 738 54.7
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 9.9e-222 774.2 750 54.9
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 1.3e-221 773.9 746 55.6
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 3.8e-221 772.3 746 56.3
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 4.9e-221 771.9 750 58.1
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 1.1e-220 770.8 760 57.8
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.1e-220 770.8 763 57.8
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 1.9e-220 770.0 749 55.7
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 9.3e-220 767.7 765 56.5
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 7.9e-219 764.6 793 52.7
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 6.7e-218 761.5 754 56.6
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.9e-217 760.0 755 57.4
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.3e-217 758.8 510 73.3
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 1.6e-216 756.9 751 57.3
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 2.1e-216 756.5 751 57.4
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 2.8e-216 756.1 749 54.3
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 2.8e-216 756.1 744 53.8
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 2.8e-216 756.1 744 53.8
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 8.2e-216 754.6 748 52.9
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 1.1e-215 754.2 700 57.9
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.4e-215 753.8 740 54.5
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 2.4e-215 753.1 735 55.0
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 2.4e-215 753.1 742 55.1
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 4.0e-215 752.3 747 53.9
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 1.2e-214 750.7 742 54.9
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 1.5e-214 750.4 751 53.9
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 7.6e-214 748.0 740 53.9
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 7.6e-214 748.0 735 55.2
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.9e-213 746.1 717 55.4
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 3.8e-213 745.7 744 54.0
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.1e-212 744.2 742 54.3
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.1e-211 740.0 740 53.4
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 4.6e-211 738.8 768 53.5
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 2.3e-210 736.5 742 53.8
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 3.9e-210 735.7 747 54.1
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 5.1e-210 735.3 756 52.8
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 1.9e-209 733.4 737 54.7
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 4.8e-208 728.8 709 56.1
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 9.0e-207 724.5 541 66.0
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.9e-205 719.5 549 65.2
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.4e-204 717.2 532 63.3
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 5.1e-202 708.8 700 55.4
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 6.9e-199 698.4 749 51.1
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 4.7e-195 685.6 709 53.0
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 2.6e-177 626.7 748 47.3
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 7.5e-177 625.2 728 48.9
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.7e-168 596.3 414 70.3
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 6.8e-162 575.5 607 52.7
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.6e-153 547.0 414 62.8
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 2.0e-150 537.3 401 65.6
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 2.0e-129 467.6 343 67.9
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.1e-114 418.7 267 72.7
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 8.4e-104 382.5 661 39.0
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 1.3e-101 375.2 488 42.6
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 2.1e-78 298.1 295 54.2
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.5e-73 280.8 281 52.0
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 3.6e-70 270.8 632 33.2
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 5.3e-66 256.9 443 41.1
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 5.0e-64 250.4 351 43.9
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.5e-44 185.7 99 83.8
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 4.6e-33 147.5 305 35.1
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 4.3e-31 141.0 83 74.7
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 6.6e-16 90.5 108 47.2
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 5.6e-15 87.4 54 68.5
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 4.0e-13 81.3 139 39.6
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 6.8e-13 80.5 103 41.7
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 7.8e-09 67.0 86 46.5
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.3e-08 66.2 79 50.6
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 3.0e-08 65.1 41 75.6
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 5.1e-08 64.3 335 24.8
Gorai.002G037200 Gossypium raimondii HOM05D008447 ORTHO05D010638 4.3e-07 61.2 334 23.7
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 9.6e-07 60.1 252 25.0
Nitab4.5_0001379g0110 Nicotiana tabacum HOM05D007982 ORTHO05D010255 9.6e-07 60.1 354 25.4
Migut.J01799 Erythranthe guttata HOM05D008447 ORTHO05D010638 1.3e-06 59.7 257 26.1
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.3e-06 59.7 372 25.5
Nitab4.5_0003038g0010 Nicotiana tabacum HOM05D007982 ORTHO05D010255 1.3e-06 59.7 354 25.1
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.8e-06 58.5 64 50.0
Solyc04g008880.4 Solanum lycopersicum HOM05D007982 ORTHO05D010255 2.8e-06 58.5 354 25.1
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 4.8e-06 57.8 40 65.0
Sopen04g004060 Solanum pennellii HOM05D007982 ORTHO05D010255 6.2e-06 57.4 354 25.7
PGSC0003DMG400025302 Solanum tuberosum HOM05D007982 ORTHO05D010255 6.2e-06 57.4 354 25.7


User provided reference genes

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