Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 0.0e+00 1085.1 561 100.0
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 7.4e-173 611.3 538 59.7
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.5e-168 597.0 567 57.0
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 5.7e-165 585.1 513 60.2
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 6.5e-161 571.6 548 56.9
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 6.5e-161 571.6 506 59.5
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 1.2e-159 567.4 536 56.7
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 3.6e-159 565.8 528 56.6
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.6e-157 559.7 535 56.3
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.8e-157 557.8 547 55.2
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 6.3e-156 555.1 541 54.0
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 4.1e-155 552.4 517 56.7
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 7.0e-155 551.6 528 56.2
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 7.0e-155 551.6 537 55.1
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 9.1e-155 551.2 540 54.1
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 7.7e-154 548.1 518 57.3
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.3e-153 547.4 540 54.1
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 2.9e-153 546.2 521 55.3
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 6.5e-153 545.0 505 56.8
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 6.5e-153 545.0 533 54.8
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.1e-152 544.3 559 52.8
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.5e-152 543.9 524 55.0
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 7.2e-152 541.6 502 57.2
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.1e-151 540.0 509 55.2
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.6e-151 539.3 529 55.0
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 6.1e-151 538.5 545 54.5
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 1.8e-150 537.0 520 55.0
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.8e-150 537.0 520 55.0
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 1.8e-150 537.0 528 54.7
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 4.0e-150 535.8 535 54.8
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 5.2e-150 535.4 522 55.2
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.8e-150 534.6 520 54.8
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 2.0e-149 533.5 508 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 2.6e-149 533.1 511 56.4
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.4e-149 532.7 538 54.3
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 4.4e-149 532.3 540 53.3
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 5.7e-149 531.9 514 54.7
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 5.7e-149 531.9 539 54.4
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 7.5e-149 531.6 537 53.8
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 9.8e-149 531.2 540 53.5
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 9.8e-149 531.2 539 53.8
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.3e-148 530.8 513 55.2
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 2.8e-148 529.6 543 54.0
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 3.7e-148 529.3 540 53.9
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 4.9e-148 528.9 541 53.8
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 4.9e-148 528.9 535 54.0
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.3e-148 528.1 521 54.5
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 8.3e-148 528.1 521 54.7
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.1e-147 527.7 535 53.6
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.1e-147 527.7 517 54.2
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.1e-147 527.7 537 53.6
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.1e-147 527.7 529 54.3
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.8e-147 526.9 510 54.7
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 3.1e-147 526.2 509 55.4
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 5.4e-147 525.4 546 53.3
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 7.0e-147 525.0 540 53.1
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 7.0e-147 525.0 524 54.4
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.6e-146 523.9 524 53.8
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 2.7e-146 523.1 530 54.0
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 2.7e-146 523.1 523 53.9
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 4.5e-146 522.3 540 53.0
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 3.8e-145 519.2 530 53.6
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 5.0e-145 518.8 524 53.4
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 5.0e-145 518.8 539 52.9
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 8.6e-145 518.1 568 50.2
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 8.6e-145 518.1 530 53.4
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.1e-144 517.7 517 53.0
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.5e-144 517.3 524 54.6
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 2.5e-144 516.5 510 53.7
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 5.6e-144 515.4 594 49.5
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.2e-143 514.2 542 52.8
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 6.1e-143 511.9 530 53.2
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 5.2e-142 508.8 544 51.5
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.2e-140 503.4 519 52.4
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.2e-140 503.4 519 52.4
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 2.2e-140 503.4 489 56.4
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 2.9e-140 503.1 540 50.2
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 4.1e-139 499.2 515 52.2
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.6e-138 497.3 516 51.7
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.6e-138 497.3 535 51.2
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 4.6e-138 495.7 541 50.6
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 7.8e-138 495.0 552 50.5
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.7e-137 493.8 514 51.9
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.7e-137 493.8 515 51.1
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.7e-137 493.8 515 51.7
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.1e-136 491.1 515 50.9
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.9e-136 490.3 532 50.2
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.3e-136 489.6 511 53.0
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.2e-135 487.6 525 51.4
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 2.8e-135 486.5 488 55.1
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 8.0e-135 485.0 533 51.0
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.8e-134 483.8 543 49.5
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 3.1e-134 483.0 533 50.7
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 6.8e-134 481.9 516 51.9
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.2e-133 481.1 515 51.3
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 3.4e-133 479.6 533 50.5
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.8e-133 478.8 521 51.4
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 6.4e-132 475.3 574 47.9
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.9e-131 473.8 526 50.6
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 7.0e-131 471.9 506 52.0
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.3e-126 456.8 519 52.2
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.0e-125 453.8 524 48.7
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.7e-124 450.7 538 47.6
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 8.3e-124 448.4 552 47.6
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.1e-123 448.0 547 51.7
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 3.5e-122 443.0 462 52.6
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 6.0e-122 442.2 505 49.3
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.9e-115 420.6 525 48.4
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.1e-115 418.7 446 52.5
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 2.7e-114 416.8 334 62.6
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 3.9e-113 412.9 511 46.4
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.9e-112 410.6 461 49.0
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 6.2e-111 405.6 491 47.9
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 2.8e-103 380.2 563 43.0
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.0e-101 374.0 292 64.0
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 4.9e-100 369.4 426 48.4
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.6e-98 364.4 390 51.5
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 2.1e-98 364.0 389 51.9
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 3.0e-97 360.1 407 49.4
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 2.8e-95 353.6 389 50.4
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 1.3e-87 328.2 389 47.8
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 2.4e-86 323.9 393 49.6
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.3e-84 318.2 417 44.1
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.1e-78 296.6 506 39.3
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 3.4e-77 293.5 375 47.2
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 7.2e-75 285.8 409 40.8
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.8e-70 271.2 213 61.5
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 5.5e-67 259.6 451 40.6
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.1e-64 251.9 308 45.8
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.0e-61 241.1 218 56.4
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.5e-61 240.0 225 54.2
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 4.7e-58 229.9 329 47.7
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 6.7e-57 226.1 352 40.3
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.0e-54 216.1 162 67.9
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.6e-53 214.2 349 40.7
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 6.1e-50 203.0 315 40.6
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 8.0e-50 202.6 144 70.8
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.3e-47 195.3 135 68.9
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 6.3e-47 193.0 149 65.8
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 8.0e-34 149.4 154 51.9
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 4.0e-33 147.1 99 65.7
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.9e-31 140.2 105 63.8
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 8.3e-31 139.4 276 39.1
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.0e-28 132.5 336 36.6
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 6.4e-23 113.2 68 72.1
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.4e-22 111.3 192 38.5
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.2e-14 84.3 59 62.7
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 9.5e-11 72.8 124 40.3
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 9.5e-11 72.8 58 62.1
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.7e-07 60.8 54 48.1
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 6.4e-07 60.1 38 68.4
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 6.4e-07 60.1 45 60.0
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 1.9e-06 58.5 60 53.3


User provided reference genes

Program Settings