Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0090s0013 Marchantia polymorpha HOM05D009562 ORTHO05D010783 2.7e-229 799.3 776 100.0
Mapoly0363s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 8.0e-125 452.2 590 70.0
Mapoly0023s0113 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.2e-120 438.3 555 71.0
Mapoly0122s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 5.9e-120 436.0 556 67.8
Mapoly0122s0002 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.3e-119 434.9 554 70.8
Mapoly0015s0130 Marchantia polymorpha HOM05D009562 ORTHO05D010783 2.5e-102 377.5 562 67.3
Mapoly0115s0072 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.9e-98 363.2 555 62.0
Mapoly1649s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 6.0e-96 356.3 535 68.0
Mapoly0023s0110 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.7e-90 338.2 426 71.4
Mapoly0137s0035 Marchantia polymorpha HOM05D009562 ORTHO05D010783 2.0e-83 314.7 593 60.2
Mapoly0268s0002 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.1e-81 307.0 560 63.2
Mapoly0160s0033 Marchantia polymorpha HOM05D009562 ORTHO05D010783 3.9e-71 273.9 562 60.0
Mapoly1037s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 2.8e-69 267.7 556 57.6
Mapoly0129s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.5e-67 261.9 471 68.4
Mapoly1594s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.2e-64 252.3 435 69.7
Mapoly2608s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.6e-64 251.9 197 70.6
Mapoly2524s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.3e-61 242.3 442 64.3
Mapoly1470s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 9.9e-59 232.6 438 69.4
Mapoly0211s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 3.8e-42 177.6 466 51.7
Mapoly0066s0077 Marchantia polymorpha HOM05D009352 ORTHO05D010783 4.8e-37 160.6 397 50.1
Mapoly0006s0310 Marchantia polymorpha HOM05D009352 ORTHO05D010783 4.1e-36 157.5 237 54.9
Mapoly2877s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.1e-36 157.5 85 90.6
Mapoly0118s0002 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.6e-35 154.8 464 51.5
Mapoly0056s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.3e-34 152.5 328 54.0
Mapoly0327s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.7e-34 152.1 472 52.1
Mapoly0083s0098 Marchantia polymorpha HOM05D009352 ORTHO05D010783 6.1e-32 143.7 236 53.8
Mapoly0048s0054 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.6e-30 138.3 237 52.7
Mapoly0049s0035 Marchantia polymorpha HOM05D009352 ORTHO05D010783 3.3e-30 137.9 349 53.0
Mapoly3096s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.8e-29 134.0 75 88.0
Mapoly3765s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 4.5e-27 127.5 238 54.6
Mapoly0158s0041 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.0e-22 112.1 219 32.9
Mapoly0006s0272 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.8e-20 105.5 203 57.1
Mapoly0158s0040 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.0e-19 102.1 410 51.5
Mapoly0009s0035 Marchantia polymorpha HOM05D009352 ORTHO05D010783 3.8e-18 97.8 98 52.0
Mapoly0118s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.2e-16 92.8 74 60.8
CARHR175480 Cardamine hirsuta HOM05D000021 ORTHO05D000010 5.0e-10 70.9 88 42.0
Thhalv10000746m.g Eutrema salsugineum HOM05D000021 ORTHO05D000010 2.5e-09 68.6 88 42.0
Aa31sc309G10 Aethionema arabicum HOM05D000021 ORTHO05D000010 3.2e-09 68.2 83 44.6
Mapoly0263s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 3.2e-09 68.2 49 61.2
SMO147G0088 Selaginella moellendorffii HOM05D025607 ORTHO05D008832 3.2e-09 68.2 77 45.5
AT5G46330 Arabidopsis thaliana HOM05D000021 ORTHO05D000010 1.6e-08 65.9 88 39.8
CAN.G787.16 Capsicum annuum HOM05D000021 ORTHO05D000010 3.6e-08 64.7 88 42.0
Rhsim10G0084900 Rhododendron simsii HOM05D000029 ORTHO05D008832 4.7e-08 64.3 72 45.8
DCAR_010771 Daucus carota HOM05D000029 ORTHO05D000854 6.1e-08 63.9 90 37.8
HanXRQChr02g0057581 Helianthus annuus HOM05D000071 ORTHO05D000029 6.1e-08 63.9 74 45.9
THA.LOC104805973 Tarenaya hassleriana HOM05D000033 ORTHO05D001688 1.0e-07 63.2 87 39.1
SpUn0734_0010 Schrenkiella parvula HOM05D000021 ORTHO05D018350 1.4e-07 62.8 88 38.6
Sed0014573 Sechium edule HOM05D000029 ORTHO05D000854 1.4e-07 62.8 75 41.3
Aa31LG9G6570 Aethionema arabicum HOM05D000021 ORTHO05D000010 1.8e-07 62.4 83 41.0
arahy.Tifrunner.gnm1.ann1.QK0Y39 Arachis hypogaea HOM05D000021 ORTHO05D000010 1.8e-07 62.4 75 45.3
arahy.Tifrunner.gnm1.ann1.RAB7YL Arachis hypogaea HOM05D000021 ORTHO05D000010 1.8e-07 62.4 75 45.3
SMO273G0034 Selaginella moellendorffii HOM05D009562 ORTHO05D002063 1.8e-07 62.4 74 41.9
THA.LOC104827727 Tarenaya hassleriana HOM05D000021 ORTHO05D000010 1.8e-07 62.4 85 38.8
Haze_19921 Corylus avellana HOM05D000029 ORTHO05D008567 2.3e-07 62.0 86 40.7
MELO3C007675.2 Cucumis melo HOM05D000029 ORTHO05D000854 2.3e-07 62.0 69 42.0
CsaV3_6G044530 Cucumis sativus L. HOM05D000029 ORTHO05D000854 2.3e-07 62.0 69 42.0
Ah.02g124560 Amaranthus hybridus HOM05D002919 ORTHO05D003327 3.0e-07 61.6 74 44.6
CAN.G525.61 Capsicum annuum HOM05D000021 ORTHO05D000010 3.0e-07 61.6 88 40.9
Carub.0008s0158 Capsella rubella HOM05D000021 ORTHO05D000010 4.0e-07 61.2 74 40.5
Thecc.10G021400 Theobroma cacao HOM05D000021 ORTHO05D000010 4.0e-07 61.2 73 43.8
CSS0012325 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 5.2e-07 60.8 84 38.1
Nitab4.5_0000057g0040 Nicotiana tabacum HOM05D000021 ORTHO05D000010 5.2e-07 60.8 88 39.8
TPR.G22419 Trifolium pratense HOM05D000029 ORTHO05D000854 5.2e-07 60.8 86 40.7
Eucgr.F04390 Eucalyptus grandis HOM05D000021 ORTHO05D000010 6.8e-07 60.5 72 47.2
Eucgr.L01229 Eucalyptus grandis HOM05D000021 ORTHO05D000010 6.8e-07 60.5 72 48.6
HanXRQChr02g0057651 Helianthus annuus HOM05D001705 ORTHO05D002725 6.8e-07 60.5 74 44.6
LjContig00357g0014932 Lotus japonicus HOM05D000021 ORTHO05D000010 6.8e-07 60.5 71 45.1
Nitab4.5_0000057g0030 Nicotiana tabacum HOM05D000021 ORTHO05D000010 6.8e-07 60.5 85 38.8
PGSC0003DMG400023639 Solanum tuberosum HOM05D000021 ORTHO05D000010 6.8e-07 60.5 86 39.5
TPR.G26012 Trifolium pratense HOM05D000029 ORTHO05D000854 6.8e-07 60.5 81 39.5
CAN.G186.54 Capsicum annuum HOM05D000021 ORTHO05D000010 8.8e-07 60.1 86 46.5
Medtr4g097880 Medicago truncatula HOM05D000029 ORTHO05D000854 8.8e-07 60.1 74 44.6
Nitab4.5_0000093g0070 Nicotiana tabacum HOM05D000029 ORTHO05D000854 8.8e-07 60.1 88 36.4
Potri.005G030800 Populus trichocarpa HOM05D000021 ORTHO05D000010 8.8e-07 60.1 79 41.8
PGSC0003DMG401023640 Solanum tuberosum HOM05D000021 ORTHO05D000010 8.8e-07 60.1 86 40.7
vmacro09201 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 8.8e-07 60.1 73 46.6
vmacro22970 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 8.8e-07 60.1 73 47.9
VMungo1215G2740 Vigna mungo HOM05D000029 ORTHO05D000854 8.8e-07 60.1 87 34.5
Ah.04g150790 Amaranthus hybridus HOM05D000021 ORTHO05D000010 1.2e-06 59.7 75 41.3
CSS0034441 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.2e-06 59.7 95 41.1
CSS0046182 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.2e-06 59.7 95 41.1
Cpa.g.sc16.16 Carica papaya HOM05D000021 ORTHO05D000010 1.2e-06 59.7 80 45.0
Ciclev10010969m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.2e-06 59.7 76 42.1
RcHm_v2.0_Chr2g0109581 Rosa chinensis HOM05D000029 ORTHO05D000854 1.2e-06 59.7 71 42.3
Hund19173 Selenicereus undatus HOM05D000029 ORTHO05D008567 1.2e-06 59.7 82 41.5
PGSC0003DMG400006065 Solanum tuberosum HOM05D000021 ORTHO05D000010 1.2e-06 59.7 85 40.0
Ciclev10013307m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.5e-06 59.3 91 40.7
HanXRQChr07g0200541 Helianthus annuus HOM05D000021 ORTHO05D000010 1.5e-06 59.3 72 45.8
Mapoly0025s0062 Marchantia polymorpha HOM05D009562 ORTHO05D017073 1.5e-06 59.3 72 40.3
Nitab4.5_0004219g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 1.5e-06 59.3 68 39.7
Phvul.002G007600 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 1.5e-06 59.3 87 35.6
Potri.013G020900 Populus trichocarpa HOM05D000021 ORTHO05D000010 1.5e-06 59.3 86 40.7
Atru.chr2.929 Acer truncatum HOM05D000021 ORTHO05D000010 2.0e-06 58.9 72 44.4
Mapoly0075s0012 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.0e-06 58.9 63 41.3
Potri.005G031300 Populus trichocarpa HOM05D000021 ORTHO05D000010 2.0e-06 58.9 79 41.8
Prupe.6G212200 Prunus persica HOM05D000029 ORTHO05D000854 2.0e-06 58.9 80 38.8
SEGI_31013 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 2.0e-06 58.9 77 36.4
PGSC0003DMG402005482 Solanum tuberosum HOM05D000021 ORTHO05D000010 2.0e-06 58.9 91 38.5
Thecc.10G022300 Theobroma cacao HOM05D000021 ORTHO05D000010 2.0e-06 58.9 70 47.1
CANSAT01G3133 Cannabis sativa HOM05D000029 ORTHO05D000854 2.6e-06 58.5 87 37.9
Cpa.g.sc129.40 Carica papaya HOM05D000029 ORTHO05D000854 2.6e-06 58.5 84 36.9
Lsat_1_v5_gn_2_107620 Lactuca sativa HOM05D000021 ORTHO05D000010 2.6e-06 58.5 75 44.0
TAR628G0246 Trochodendron aralioides HOM05D000021 ORTHO05D000010 2.6e-06 58.5 73 45.2
AagrBONN_evm.TU.Sc2ySwM_368.87 Anthoceros agrestis HOM05D009352 ORTHO05D010783 3.4e-06 58.2 88 39.8
Ciclev10013426m.g Citrus clementina HOM05D000021 ORTHO05D000010 3.4e-06 58.2 91 39.6
Ciclev10024610m.g Citrus clementina HOM05D000021 ORTHO05D000010 3.4e-06 58.2 75 41.3
Gorai.011G284900 Gossypium raimondii HOM05D000021 ORTHO05D000010 3.4e-06 58.2 76 43.4
Os01g0523100 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 3.4e-06 58.2 85 37.6
PSO063G2028 Papaver somniferum HOM05D000021 ORTHO05D000010 3.4e-06 58.2 73 45.2
PSO423G0110 Papaver somniferum HOM05D000021 ORTHO05D000010 3.4e-06 58.2 74 44.6
PSO596G0038 Papaver somniferum HOM05D000021 ORTHO05D000010 3.4e-06 58.2 74 44.6
Sed0017576 Sechium edule HOM05D000021 ORTHO05D000010 3.4e-06 58.2 73 45.2
Sed0019229 Sechium edule HOM05D009562 ORTHO05D008832 3.4e-06 58.2 72 43.1
SEGI_36719 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 3.4e-06 58.2 75 38.7
Ciclev10013815m.g Citrus clementina HOM05D000021 ORTHO05D000010 4.4e-06 57.8 91 39.6
Eucgr.C00631 Eucalyptus grandis HOM05D000021 ORTHO05D000010 4.4e-06 57.8 87 36.8
Nn1g04224 Nelumbo nucifera HOM05D000021 ORTHO05D000010 4.4e-06 57.8 75 45.3
Nitab4.5_0008451g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 4.4e-06 57.8 88 38.6
Os02g0609900 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 4.4e-06 57.8 87 43.7
PSO675G0241 Papaver somniferum HOM05D000021 ORTHO05D000010 4.4e-06 57.8 74 45.9
Solyc03g096190.2 Solanum lycopersicum HOM05D000021 ORTHO05D000010 4.4e-06 57.8 85 42.4
Solyc07g015990.2 Solanum lycopersicum HOM05D000021 ORTHO05D000010 4.4e-06 57.8 84 41.7
vmacro22969 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 4.4e-06 57.8 92 42.4
CSS0029371 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 5.7e-06 57.4 73 39.7
CAN.G787.8 Capsicum annuum HOM05D000021 ORTHO05D000010 5.7e-06 57.4 86 39.5
Migut.G01044 Erythranthe guttata HOM05D000021 ORTHO05D000010 5.7e-06 57.4 85 40.0
Manes.07G127904 Manihot esculenta HOM05D000021 ORTHO05D000010 5.7e-06 57.4 73 43.8
Nitab4.5_0002334g0060 Nicotiana tabacum HOM05D000021 ORTHO05D000010 5.7e-06 57.4 88 40.9
Nitab4.5_0005800g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 5.7e-06 57.4 86 40.7
PSO732G0269 Papaver somniferum HOM05D000021 ORTHO05D000010 5.7e-06 57.4 70 45.7
Peaxi162Scf00569g00417 Petunia axillaris HOM05D000021 ORTHO05D000010 5.7e-06 57.4 88 37.5
Potri.005G031700 Populus trichocarpa HOM05D000021 ORTHO05D000010 5.7e-06 57.4 79 39.2
SEGI_04087 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 5.7e-06 57.4 78 41.0
TPR.G35121 Trifolium pratense HOM05D000021 ORTHO05D000010 5.7e-06 57.4 71 42.3
Zm00001eb274000 Zea mays HOM05D000021 ORTHO05D000010 5.7e-06 57.4 75 42.7
Atru.chr2.979 Acer truncatum HOM05D000021 ORTHO05D000010 7.5e-06 57.0 75 40.0
Atru.chr3.1101 Acer truncatum HOM05D000029 ORTHO05D000854 7.5e-06 57.0 72 37.5
CAN.G525.64 Capsicum annuum HOM05D000021 ORTHO05D000010 7.5e-06 57.0 82 41.5
Eucgr.I00485 Eucalyptus grandis HOM05D000021 ORTHO05D000010 7.5e-06 57.0 72 45.8
MD03G1180000 Malus domestica HOM05D000021 ORTHO05D000010 7.5e-06 57.0 88 39.8
Manes.01G120300 Manihot esculenta HOM05D000021 ORTHO05D000010 7.5e-06 57.0 72 44.4
SalBow7G0526 Salvia bowleyana HOM05D000021 ORTHO05D000010 7.5e-06 57.0 79 45.6
SalBow7G0737 Salvia bowleyana HOM05D000021 ORTHO05D000010 7.5e-06 57.0 79 45.6
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 7.5e-06 57.0 75 38.7
TAR633G2674 Trochodendron aralioides HOM05D000021 ORTHO05D000010 7.5e-06 57.0 72 43.1
vmacro08143 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 7.5e-06 57.0 92 40.2
CSS0009995 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 9.8e-06 56.6 95 40.0
CAN.G525.48 Capsicum annuum HOM05D000021 ORTHO05D000010 9.8e-06 56.6 89 40.4
AUR62030287 Chenopodium quinoa HOM05D000021 ORTHO05D000010 9.8e-06 56.6 106 35.8
Ciclev10030587m.g Citrus clementina HOM05D000021 ORTHO05D000010 9.8e-06 56.6 83 44.6
Duzib151G0121 Durio zibethinus HOM05D000021 ORTHO05D000010 9.8e-06 56.6 233 26.2
Eucgr.F02245 Eucalyptus grandis HOM05D000021 ORTHO05D000010 9.8e-06 56.6 72 45.8
Eucgr.G00456 Eucalyptus grandis HOM05D000021 ORTHO05D000010 9.8e-06 56.6 72 45.8
HanXRQChr02g0057531 Helianthus annuus HOM05D000071 ORTHO05D000029 9.8e-06 56.6 74 45.9
Lj4C171T2 Lonicera japonica HOM05D000029 ORTHO05D000854 9.8e-06 56.6 80 35.0
Mapoly0089s0004 Marchantia polymorpha HOM05D000029 ORTHO05D002586 9.8e-06 56.6 77 46.8
PSO210G6616 Papaver somniferum HOM05D000021 ORTHO05D000010 9.8e-06 56.6 74 44.6
Phvul.003G231350 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 9.8e-06 56.6 86 39.5
Phvul.003G231400 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 9.8e-06 56.6 86 39.5
SMO147G0081 Selaginella moellendorffii HOM05D000029 ORTHO05D000010 9.8e-06 56.6 74 40.5
THA.LOC104809220 Tarenaya hassleriana HOM05D000021 ORTHO05D000010 9.8e-06 56.6 88 39.8


User provided reference genes

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