Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 4.8e-163 577.8 296 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 1.2e-92 344.0 291 56.4
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 2.0e-84 316.6 236 63.6
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 3.4e-68 262.7 293 45.7
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 7.1e-66 255.0 281 47.0
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 2.1e-49 200.3 217 46.1
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 2.7e-49 199.9 213 44.6
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 4.6e-49 199.1 219 44.7
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 8.2e-46 188.3 230 42.2
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 1.8e-45 187.2 217 41.9
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.8e-45 187.2 246 40.7
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 4.1e-45 186.0 213 45.1
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.1e-45 186.0 216 44.9
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.3e-45 185.7 238 41.6
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 5.3e-45 185.7 238 41.2
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 6.9e-45 185.3 227 44.1
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 6.9e-45 185.3 230 42.2
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 6.9e-45 185.3 238 41.6
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.5e-44 184.1 237 40.5
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.0e-44 183.7 216 42.6
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.0e-44 183.7 255 39.2
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.6e-44 183.3 232 40.9
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 3.4e-44 183.0 216 42.6
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.4e-44 183.0 229 41.5
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.4e-44 183.0 235 41.7
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.5e-44 182.6 216 42.1
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 4.5e-44 182.6 217 43.8
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 5.9e-44 182.2 217 44.2
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 7.7e-44 181.8 230 41.3
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.3e-43 181.0 227 39.6
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.7e-43 180.6 238 42.0
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.2e-43 180.3 229 39.7
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.9e-43 179.9 216 44.0
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.8e-43 179.5 235 41.3
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 6.5e-43 178.7 213 43.2
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 8.5e-43 178.3 230 40.4
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-42 177.9 237 40.5
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.9e-42 177.2 217 41.9
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.9e-42 177.2 217 41.5
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 2.5e-42 176.8 217 41.5
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.2e-42 176.4 215 42.8
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 7.2e-42 175.3 213 44.1
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 7.2e-42 175.3 217 40.6
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.2e-42 175.3 237 40.5
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 1.2e-41 174.5 237 39.7
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.6e-41 174.1 230 40.9
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.6e-41 174.1 213 42.7
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 2.1e-41 173.7 244 38.1
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.1e-41 173.7 230 40.4
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.1e-41 173.7 209 41.6
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 3.6e-41 172.9 244 38.1
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.7e-41 172.6 216 40.7
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 7.9e-41 171.8 211 39.8
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 7.9e-41 171.8 230 38.7
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.8e-40 170.6 199 44.2
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.8e-40 170.6 213 42.3
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 2.3e-40 170.2 223 39.9
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.3e-40 170.2 207 40.6
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.3e-40 170.2 231 40.3
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.0e-40 169.9 241 37.8
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.2e-40 169.1 217 38.7
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 6.7e-40 168.7 228 40.4
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 8.8e-40 168.3 218 39.0
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.5e-39 167.5 216 39.8
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 5.7e-39 165.6 217 39.2
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 5.7e-39 165.6 233 38.6
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 7.4e-39 165.2 220 37.7
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 7.4e-39 165.2 220 37.7
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 7.4e-39 165.2 219 40.6
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.7e-38 164.1 223 38.6
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 3.7e-38 162.9 215 38.1
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 3.7e-38 162.9 218 37.2
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 4.8e-38 162.5 226 38.1
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 8.2e-38 161.8 218 37.2
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 1.1e-37 161.4 227 42.7
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.4e-37 161.0 197 42.6
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.8e-37 160.6 278 34.2
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.8e-37 160.6 217 40.1
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 2.4e-37 160.2 217 37.3
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 2.4e-37 160.2 215 38.1
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 5.3e-37 159.1 227 39.6
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 5.3e-37 159.1 218 40.4
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.2e-36 157.9 216 38.9
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.6e-36 157.5 215 38.6
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.6e-36 156.8 231 34.6
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.5e-36 156.4 185 42.7
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 4.5e-36 156.0 215 38.1
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 4.5e-36 156.0 219 41.1
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 5.9e-36 155.6 224 38.8
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.0e-35 154.8 218 38.1
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.2e-35 153.7 219 37.4
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.2e-35 153.7 206 37.9
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 6.5e-35 152.1 215 38.6
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 8.5e-35 151.8 218 38.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 8.5e-35 151.8 218 36.7
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.5e-34 151.0 195 39.5
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 2.5e-34 150.2 215 37.2
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.2e-34 149.4 223 37.7
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 9.4e-34 148.3 230 36.5
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.6e-33 147.5 232 37.1
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 2.1e-33 147.1 234 35.9
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 2.1e-33 147.1 216 35.6
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.7e-33 146.7 218 35.8
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.7e-33 146.7 216 35.2
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.7e-33 146.7 221 36.2
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 2.7e-33 146.7 214 34.1
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.1e-33 145.6 217 35.5
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.8e-32 144.1 232 32.3
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 4.0e-32 142.9 237 33.8
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.0e-32 142.9 154 47.4
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 5.2e-32 142.5 220 36.4
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 8.8e-32 141.7 230 36.5
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.2e-31 141.4 152 44.1
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 2.0e-31 140.6 224 34.4
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 2.0e-31 140.6 214 33.2
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 2.6e-31 140.2 218 34.9
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 3.3e-31 139.8 206 36.4
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 7.5e-31 138.7 154 43.5
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 2.8e-30 136.7 225 35.1
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 2.0e-28 130.6 224 33.5
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 4.5e-28 129.4 220 35.9
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 1.3e-27 127.9 178 38.8
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.7e-27 127.5 232 32.8
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 3.8e-27 126.3 232 31.9
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 3.8e-27 126.3 232 31.9
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 5.0e-27 125.9 194 36.6
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 8.5e-27 125.2 214 33.6
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 1.5e-26 124.4 208 36.5
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.5e-26 124.4 220 36.4
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 2.5e-26 123.6 232 31.0
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 3.2e-26 123.2 232 31.0
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 3.2e-26 123.2 232 31.0
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 4.2e-26 122.9 220 35.9
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 4.2e-26 122.9 232 33.2
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.6e-25 120.9 217 35.0
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 2.1e-25 120.6 152 42.1
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 2.7e-25 120.2 220 36.4
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 4.7e-25 119.4 208 34.6
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 8.0e-25 118.6 154 43.5
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 3.0e-24 116.7 206 33.0
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.0e-24 116.7 165 36.4
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 4.0e-24 116.3 215 33.0
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 6.8e-24 115.5 169 37.3
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 8.8e-24 115.2 77 64.9
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.2e-23 114.8 166 33.1
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 1.5e-23 114.4 226 34.5
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 2.0e-23 114.0 197 32.5
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.6e-23 113.6 197 35.0
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.4e-23 112.8 190 34.7
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 7.5e-23 112.1 190 34.2
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.3e-22 111.3 216 30.1
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.1e-21 108.2 220 33.6
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 4.1e-21 106.3 155 37.4
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.2e-20 104.8 145 39.3
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.2e-20 104.8 188 30.3
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 3.5e-20 103.2 221 33.0
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 3.5e-20 103.2 221 33.0
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 2.9e-19 100.1 113 46.0
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.6e-17 94.4 154 34.4
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.0e-16 91.7 122 40.2
CBR_g39324 Chara braunii HOM05D003762 ORTHO05D004374 5.7e-15 85.9 85 44.7
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 6.3e-14 82.4 79 50.6
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 1.1e-13 81.6 102 37.3
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.4e-13 81.3 78 47.4
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.4e-13 79.3 136 33.8
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 5.4e-13 79.3 140 30.7
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 9.2e-13 78.6 87 42.5
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 8.6e-11 72.0 120 35.0
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 8.6e-11 72.0 216 25.0
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 3.3e-10 70.1 88 38.6
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 3.3e-10 70.1 87 40.2
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 7.3e-10 68.9 78 38.5
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.2e-09 68.2 90 35.6
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.2e-09 68.2 107 32.7
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.5e-07 58.9 97 35.1
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 6.4e-06 55.8 30 66.7


User provided reference genes

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