Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 5.5e-264 913.7 442 100.0
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 4.4e-136 488.8 382 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 2.8e-135 486.1 382 59.2
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 5.9e-125 451.8 379 55.7
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 5.9e-125 451.8 379 55.7
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 5.0e-124 448.7 384 55.2
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 2.5e-123 446.4 434 50.9
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 4.3e-123 445.7 417 52.0
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 2.8e-122 443.0 416 52.4
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 2.3e-121 439.9 421 51.5
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 2.3e-121 439.9 407 52.8
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 6.8e-121 438.3 390 52.8
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 6.8e-121 438.3 383 53.3
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 8.9e-121 438.0 377 53.8
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.2e-120 437.6 390 52.8
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 1.5e-120 437.2 385 54.0
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 3.4e-120 436.0 398 52.8
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 4.4e-120 435.6 378 54.5
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 5.8e-120 435.3 388 53.6
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 5.8e-120 435.3 401 51.4
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 9.8e-120 434.5 378 54.0
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 1.3e-119 434.1 382 53.7
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 2.9e-119 433.0 379 53.6
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 3.7e-119 432.6 377 53.8
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 3.7e-119 432.6 379 53.0
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 6.4e-119 431.8 379 53.6
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 6.4e-119 431.8 393 54.2
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 8.3e-119 431.4 377 54.1
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 8.3e-119 431.4 377 53.8
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 1.1e-118 431.0 379 55.1
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 1.4e-118 430.6 377 53.6
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 1.4e-118 430.6 403 50.6
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 2.4e-118 429.9 378 52.6
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 2.4e-118 429.9 380 53.7
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 4.1e-118 429.1 397 52.4
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 5.4e-118 428.7 378 53.2
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 5.4e-118 428.7 379 54.4
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 7.0e-118 428.3 380 53.4
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 1.2e-117 427.6 434 49.3
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.6e-117 427.2 377 53.6
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 1.6e-117 427.2 380 53.2
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 1.6e-117 427.2 394 52.0
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 2.0e-117 426.8 387 52.2
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 2.0e-117 426.8 377 52.3
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 2.7e-117 426.4 380 53.2
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 7.8e-117 424.9 378 52.6
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 7.8e-117 424.9 380 52.6
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 1.0e-116 424.5 380 52.4
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 1.0e-116 424.5 380 52.4
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 1.7e-116 423.7 390 52.6
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 1.7e-116 423.7 377 52.5
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 3.0e-116 422.9 388 52.3
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 6.6e-116 421.8 389 53.2
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 6.6e-116 421.8 374 52.7
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 6.6e-116 421.8 386 50.8
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 6.6e-116 421.8 389 51.4
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 8.6e-116 421.4 384 53.1
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 1.1e-115 421.0 386 52.3
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 1.1e-115 421.0 390 52.6
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 2.5e-115 419.9 408 51.0
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 9.5e-115 417.9 384 51.6
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 9.5e-115 417.9 384 51.6
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 9.5e-115 417.9 380 52.9
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 9.5e-115 417.9 404 49.5
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 2.1e-114 416.8 409 50.1
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 2.1e-114 416.8 387 51.2
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 3.6e-114 416.0 378 52.9
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 4.7e-114 415.6 388 51.3
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 1.8e-113 413.7 378 51.1
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 3.1e-113 412.9 386 52.8
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 3.1e-113 412.9 407 49.1
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 4.0e-113 412.5 389 50.6
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 8.9e-113 411.4 377 51.2
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 8.9e-113 411.4 378 50.8
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.2e-112 411.0 387 49.4
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 1.5e-112 410.6 386 51.0
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 1.5e-112 410.6 388 49.5
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.5e-112 410.6 408 50.0
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 4.4e-112 409.1 380 51.6
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 7.5e-112 408.3 383 51.7
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 3.7e-111 406.0 388 51.0
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 6.4e-111 405.2 383 51.4
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 2.4e-110 403.3 454 46.5
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 7.1e-110 401.7 358 53.4
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 2.1e-109 400.2 404 48.5
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 3.5e-109 399.4 378 50.3
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 6.0e-109 398.7 434 45.4
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 9.5e-107 391.3 362 52.5
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 4.7e-106 389.0 377 50.7
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 4.0e-105 386.0 340 52.6
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 1.1e-102 377.9 366 48.9
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 1.4e-102 377.5 381 50.7
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.5e-99 366.7 403 45.7
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 6.8e-97 358.6 336 49.4
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 7.6e-96 355.1 306 54.9
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 1.3e-95 354.4 345 48.7
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 4.9e-95 352.4 320 51.2
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 3.5e-93 346.3 325 50.8
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 6.9e-89 332.0 382 40.3
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 3.4e-88 329.7 382 41.1
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 1.5e-83 314.3 381 43.0
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 8.1e-82 308.5 289 50.5
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 1.5e-80 304.3 386 40.4
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 6.0e-69 265.8 238 52.5
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 2.5e-67 260.4 293 46.8
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 1.3e-66 258.1 271 47.2
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 1.1e-62 245.0 468 34.6
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 1.8e-52 211.1 377 34.7
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.1e-46 191.8 334 35.3
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 5.1e-44 183.0 254 41.7
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.9e-38 164.5 189 44.4
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.2e-37 161.8 129 55.8
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 1.6e-37 161.4 250 36.8
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 2.0e-35 154.5 209 37.3
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 3.2e-22 110.5 102 52.9
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 6.6e-15 86.3 90 46.7
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.5e-14 85.1 60 66.7
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.0e-12 77.4 60 58.3
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 8.9e-12 75.9 186 27.4
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 4.4e-11 73.6 60 56.7
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 7.0e-09 66.2 42 66.7
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 5.0e-07 60.1 87 35.6


User provided reference genes

Program Settings