Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 3.0e-213 745.0 385 100.0
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 2.4e-82 310.1 267 60.7
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.6e-81 307.4 237 62.0
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 6.4e-75 285.4 255 58.0
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 6.4e-75 285.4 277 55.6
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 6.4e-75 285.4 256 56.2
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 2.4e-74 283.5 243 57.6
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 4.2e-74 282.7 249 56.6
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 1.6e-73 280.8 251 55.0
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 2.1e-73 280.4 257 56.8
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 2.1e-73 280.4 240 57.1
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 2.1e-73 280.4 245 57.6
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 2.7e-73 280.0 241 56.4
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 2.7e-73 280.0 248 58.5
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 4.6e-73 279.3 246 57.7
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 4.6e-73 279.3 253 55.7
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 6.0e-73 278.9 245 57.6
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 7.8e-73 278.5 250 55.2
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 7.8e-73 278.5 259 56.4
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.0e-72 278.1 239 57.7
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 1.0e-72 278.1 239 57.7
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 1.0e-72 278.1 249 56.2
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 1.3e-72 277.7 254 53.9
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 1.3e-72 277.7 247 56.3
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 1.3e-72 277.7 291 50.9
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 1.7e-72 277.3 245 57.1
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.7e-72 277.3 239 56.1
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 2.3e-72 276.9 237 56.5
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 2.3e-72 276.9 237 58.6
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 2.3e-72 276.9 258 54.3
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 2.3e-72 276.9 258 57.0
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 2.3e-72 276.9 242 55.0
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 3.0e-72 276.6 248 55.6
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 3.0e-72 276.6 248 55.2
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 3.0e-72 276.6 237 58.2
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 3.9e-72 276.2 237 59.1
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 3.9e-72 276.2 237 56.1
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 5.1e-72 275.8 248 56.5
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 5.1e-72 275.8 239 56.9
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 5.1e-72 275.8 247 55.1
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 5.1e-72 275.8 237 57.8
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 6.6e-72 275.4 254 55.9
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 6.6e-72 275.4 254 55.9
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 6.6e-72 275.4 253 53.8
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 6.6e-72 275.4 245 55.1
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 6.6e-72 275.4 248 55.2
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 8.7e-72 275.0 254 55.5
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 8.7e-72 275.0 247 56.3
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 1.1e-71 274.6 239 57.7
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.5e-71 274.2 248 57.3
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 1.5e-71 274.2 237 58.6
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 1.5e-71 274.2 245 55.9
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 1.5e-71 274.2 244 55.7
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 1.5e-71 274.2 256 52.7
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 2.5e-71 273.5 237 58.6
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 2.5e-71 273.5 251 55.8
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 3.3e-71 273.1 248 54.4
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 3.3e-71 273.1 247 55.1
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 4.3e-71 272.7 248 54.8
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 4.3e-71 272.7 248 57.3
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 5.6e-71 272.3 250 55.6
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 5.6e-71 272.3 231 59.7
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 5.6e-71 272.3 242 55.0
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.3e-70 271.2 261 53.3
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 1.6e-70 270.8 229 59.0
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.6e-70 270.8 261 53.3
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.1e-70 270.4 251 52.6
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.8e-70 269.2 237 57.8
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.1e-69 268.1 244 54.5
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 1.1e-69 268.1 257 53.3
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 1.4e-69 267.7 263 54.0
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.8e-69 267.3 242 54.1
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 1.8e-69 267.3 237 57.4
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 1.8e-69 267.3 243 55.1
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 4.0e-69 266.2 241 55.2
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 5.3e-69 265.8 237 55.3
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 6.9e-69 265.4 250 53.2
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 9.0e-69 265.0 245 53.9
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 9.0e-69 265.0 244 56.1
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 2.0e-68 263.8 237 56.5
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 3.4e-68 263.1 240 54.6
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 5.8e-68 262.3 237 53.2
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 1.7e-67 260.8 240 55.0
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 3.8e-67 259.6 254 49.2
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 1.9e-66 257.3 269 50.2
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 2.4e-66 256.9 240 54.6
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 4.2e-66 256.1 298 45.6
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.3e-63 246.1 201 61.2
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 7.4e-63 245.4 243 47.3
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 1.3e-62 244.6 248 52.4
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 1.3e-62 244.6 267 47.9
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 2.6e-60 236.9 347 39.8
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 4.2e-58 229.6 259 47.5
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 4.6e-57 226.1 253 45.5
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.0e-56 224.9 200 56.5
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.5e-55 221.1 240 45.8
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 3.7e-54 216.5 234 47.0
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.8e-48 197.6 174 53.4
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 3.9e-48 196.4 237 46.0
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 8.2e-46 188.7 164 54.9
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.6e-41 174.5 186 47.3
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 7.9e-41 172.2 201 47.3
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 3.3e-39 166.8 209 41.6
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 3.7e-38 163.3 137 59.9
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 9.1e-37 158.7 115 63.5
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.2e-36 158.3 138 56.5
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 4.5e-36 156.4 138 55.8
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 8.5e-35 152.1 139 56.1
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 3.2e-34 150.2 245 38.0
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.7e-30 137.9 119 55.5
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.5e-28 129.8 120 54.2
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 9.4e-18 95.5 228 29.8
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 1.4e-13 81.6 81 51.9
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 4.1e-13 80.1 84 52.4
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 1.2e-12 78.6 81 51.9
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 1.7e-11 74.7 128 38.3
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.1e-10 72.0 67 55.2
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 2.5e-10 70.9 138 35.5
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 7.2e-10 69.3 171 29.8
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 3.0e-08 63.9 159 25.2
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 8.8e-08 62.4 83 48.2
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 1.5e-07 61.6 34 73.5
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 1.7e-06 58.2 142 31.7
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 2.2e-06 57.8 192 26.0
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 2.8e-06 57.4 216 25.5
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 3.7e-06 57.0 163 29.4
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 4.8e-06 56.6 148 30.4
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 8.3e-06 55.8 162 27.8


User provided reference genes

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