Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 2.5e-81 305.4 160 100.0
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 7.3e-57 224.2 131 86.3
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 3.4e-54 215.3 149 75.8
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 2.4e-52 209.1 154 71.4
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.1e-51 206.1 141 77.3
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.5e-49 199.1 150 70.7
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 7.3e-49 197.6 148 67.6
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 9.5e-49 197.2 148 66.9
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.2e-48 196.8 146 69.9
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 2.8e-48 195.7 141 70.9
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 1.1e-47 193.7 126 78.6
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.4e-47 193.4 148 68.9
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 1.8e-47 193.0 150 68.0
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 1.8e-47 193.0 151 66.9
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 1.8e-47 193.0 151 66.9
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.4e-47 192.6 163 62.6
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.1e-47 192.2 139 70.5
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 3.1e-47 192.2 139 70.5
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 3.1e-47 192.2 151 66.9
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 5.2e-47 191.4 125 76.8
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 6.8e-47 191.0 146 68.5
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.2e-46 190.3 140 68.6
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.2e-46 190.3 140 68.6
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 1.5e-46 189.9 141 68.8
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.5e-46 189.9 120 74.2
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.5e-46 189.9 139 69.8
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 2.0e-46 189.5 139 69.8
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 2.0e-46 189.5 148 67.6
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 2.0e-46 189.5 128 75.0
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 2.6e-46 189.1 133 69.9
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.6e-46 189.1 120 75.0
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 3.4e-46 188.7 132 71.2
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 4.4e-46 188.3 152 65.1
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 4.4e-46 188.3 120 74.2
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 4.4e-46 188.3 145 66.2
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 4.4e-46 188.3 150 66.0
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 4.4e-46 188.3 120 75.8
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 7.6e-46 187.6 152 64.5
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 1.7e-45 186.4 137 67.9
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 2.2e-45 186.0 148 66.2
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 2.9e-45 185.7 139 66.9
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 2.9e-45 185.7 155 63.2
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.9e-45 185.7 151 64.9
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.9e-45 185.7 122 75.4
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 4.9e-45 184.9 120 75.0
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 4.9e-45 184.9 120 75.0
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 6.4e-45 184.5 150 66.7
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 8.4e-45 184.1 139 66.2
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 8.4e-45 184.1 148 66.9
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 8.4e-45 184.1 148 64.2
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.1e-44 183.7 122 73.0
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.1e-44 183.7 145 66.9
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 1.1e-44 183.7 137 67.9
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.1e-44 183.7 150 67.3
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 1.4e-44 183.3 122 72.1
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.4e-44 183.3 125 73.6
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.9e-44 183.0 140 67.1
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 2.4e-44 182.6 135 68.1
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.4e-44 182.6 126 71.4
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 3.2e-44 182.2 140 65.0
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 4.2e-44 181.8 129 70.5
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 5.4e-44 181.4 139 66.2
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 5.4e-44 181.4 151 64.9
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 5.4e-44 181.4 134 69.4
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 5.4e-44 181.4 120 71.7
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 7.1e-44 181.0 120 73.3
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 7.1e-44 181.0 125 72.8
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 7.1e-44 181.0 133 69.2
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 9.2e-44 180.6 151 64.9
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 9.2e-44 180.6 128 70.3
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 9.2e-44 180.6 127 72.4
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 1.6e-43 179.9 137 67.2
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.6e-43 179.9 120 73.3
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 2.1e-43 179.5 164 62.8
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 2.1e-43 179.5 125 68.8
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 2.1e-43 179.5 146 65.1
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 2.7e-43 179.1 138 65.9
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.7e-43 179.1 123 72.4
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 3.5e-43 178.7 141 64.5
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 3.5e-43 178.7 140 65.7
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 4.6e-43 178.3 163 62.6
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 4.6e-43 178.3 125 69.6
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 4.6e-43 178.3 125 69.6
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 6.0e-43 177.9 125 71.2
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 6.0e-43 177.9 153 61.4
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.0e-42 177.2 139 67.6
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 1.3e-42 176.8 144 63.9
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 1.7e-42 176.4 125 68.8
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 1.7e-42 176.4 144 61.8
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 2.3e-42 176.0 125 68.8
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 3.0e-42 175.6 144 63.9
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 3.9e-42 175.3 125 68.8
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 5.1e-42 174.9 125 68.0
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 5.1e-42 174.9 120 69.2
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 6.6e-42 174.5 125 70.4
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.1e-41 173.7 120 73.3
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.1e-41 173.7 120 70.8
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 1.5e-41 173.3 125 69.6
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.9e-41 172.9 125 70.4
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 1.9e-41 172.9 136 65.4
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.9e-41 172.9 136 65.4
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.3e-41 172.2 125 68.0
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 4.3e-41 171.8 148 61.5
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 9.6e-41 170.6 125 68.0
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.6e-40 169.9 135 68.1
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.1e-40 169.5 116 70.7
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.1e-40 169.5 160 58.8
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 4.7e-40 168.3 141 61.7
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 4.0e-39 165.2 114 70.2
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.0e-39 165.2 157 59.9
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 4.0e-39 165.2 116 71.6
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.6e-38 162.5 135 61.5
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 2.6e-38 162.5 128 64.8
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 4.4e-38 161.8 116 69.8
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 5.8e-38 161.4 148 59.5
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 5.8e-38 161.4 148 59.5
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 7.6e-38 161.0 116 69.8
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 9.9e-38 160.6 167 53.3
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.3e-37 160.2 139 61.9
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 1.7e-37 159.8 128 61.7
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.7e-37 159.8 123 62.6
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.4e-37 157.5 151 58.9
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.4e-37 157.5 120 64.2
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.1e-36 157.1 151 58.3
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.4e-36 156.0 103 74.8
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.4e-36 156.0 103 74.8
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.4e-36 156.0 208 47.1
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 3.2e-36 155.6 103 74.8
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.2e-36 155.6 105 69.5
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 9.3e-36 154.1 150 59.3
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 3.5e-35 152.1 120 60.0
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 6.0e-35 151.4 123 65.0
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 3.9e-34 148.7 109 69.7
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 3.9e-34 148.7 104 68.3
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 5.1e-34 148.3 105 70.5
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 3.3e-33 145.6 101 71.3
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 3.6e-32 142.1 148 54.1
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 3.6e-32 142.1 154 49.4
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 1.8e-31 139.8 134 59.0
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 2.0e-30 136.3 100 69.0
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 7.6e-30 134.4 120 60.0
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.8e-29 132.1 136 55.1
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.8e-29 132.1 136 55.1
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.8e-29 132.1 136 55.1
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 2.4e-28 129.4 96 68.8
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.3e-26 123.6 127 53.5
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 2.8e-24 115.9 154 45.5
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 2.8e-24 115.9 106 56.6
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.2e-21 106.3 75 73.3
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 2.2e-21 106.3 122 45.9
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 6.4e-21 104.8 97 61.9
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 2.1e-19 99.8 58 75.9
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 2.3e-18 96.3 57 75.4
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 3.3e-17 92.4 64 71.9
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.6e-16 90.1 58 74.1
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.8e-16 89.4 132 46.2
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 3.7e-16 89.0 74 64.9
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 1.4e-15 87.0 77 57.1
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.2e-14 84.0 77 55.8
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 3.4e-14 82.4 77 54.5
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 7.6e-14 81.3 64 59.4
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 4.9e-13 78.6 137 36.5
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 3.0e-10 69.3 157 30.6
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 6.7e-10 68.2 128 36.7
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 1.1e-07 60.8 39 66.7


User provided reference genes

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