Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 0.0e+00 1771.1 970 100.0
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 1.3e-68 265.8 693 31.9
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.4e-54 218.4 532 30.1
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.7e-53 214.9 532 30.6
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.3e-52 212.6 537 30.9
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 2.3e-52 211.8 747 28.0
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.9e-51 208.8 823 25.4
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 5.6e-51 207.2 440 33.2
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 7.3e-51 206.8 494 30.6
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.2e-50 206.1 464 31.2
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.2e-50 206.1 594 29.1
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.6e-50 205.7 479 31.1
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 8.1e-50 203.4 503 32.2
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 6.8e-49 200.3 475 30.3
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 8.9e-49 199.9 500 30.8
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 8.9e-49 199.9 585 29.2
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.2e-48 199.5 786 26.0
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.5e-48 199.1 830 25.9
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 5.8e-48 197.2 508 30.5
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.7e-47 195.7 476 30.5
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.7e-47 195.7 470 30.6
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 6.4e-47 193.7 497 30.8
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.4e-46 192.6 463 30.5
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 1.4e-46 192.6 463 30.5
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 5.4e-46 190.7 502 30.3
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 5.4e-46 190.7 487 31.4
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 5.4e-46 190.7 493 30.2
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 7.1e-46 190.3 835 25.6
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.2e-45 189.5 480 29.6
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 2.1e-45 188.7 795 26.0
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 4.6e-45 187.6 549 28.8
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 7.8e-45 186.8 482 30.3
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.0e-44 186.4 490 27.1
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.7e-44 185.7 482 30.1
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 3.0e-44 184.9 490 27.6
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 5.1e-44 184.1 789 24.3
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.1e-43 183.0 841 25.2
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.1e-43 183.0 487 28.7
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.9e-43 182.2 737 26.1
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.9e-43 182.2 490 29.6
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 1.9e-43 182.2 836 25.0
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 2.5e-43 181.8 465 31.6
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 4.3e-43 181.0 801 25.6
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 5.6e-43 180.6 477 28.3
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 9.6e-43 179.9 835 25.5
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.2e-42 179.5 821 23.1
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.1e-42 178.7 499 27.7
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 8.1e-42 176.8 486 29.8
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.1e-41 176.4 502 28.3
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 1.4e-41 176.0 514 27.6
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 1.4e-41 176.0 500 27.6
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.4e-41 175.3 635 29.6
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 3.1e-41 174.9 505 27.7
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 4.0e-41 174.5 499 28.9
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 6.9e-41 173.7 454 30.2
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 2.0e-40 172.2 489 27.8
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 3.4e-40 171.4 478 28.9
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 9.9e-40 169.9 822 24.5
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 9.9e-40 169.9 838 24.6
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 9.9e-40 169.9 573 25.3
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.3e-39 169.5 604 25.3
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.7e-39 169.1 498 27.9
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 3.8e-39 167.9 469 27.3
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 8.4e-39 166.8 237 40.5
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 8.4e-39 166.8 852 23.7
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.4e-38 166.0 540 28.0
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 2.4e-38 165.2 505 27.7
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 6.0e-37 160.6 450 29.1
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.3e-36 159.5 448 30.8
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.7e-36 159.1 830 24.0
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.3e-36 158.7 491 26.9
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.3e-36 158.7 522 24.7
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 3.9e-36 157.9 490 26.1
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 3.9e-36 157.9 760 24.9
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 8.7e-36 156.8 660 25.2
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.5e-35 156.0 531 26.6
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.6e-34 152.5 496 27.6
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.6e-34 152.5 737 22.8
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 2.8e-34 151.8 847 23.0
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.4e-33 148.7 835 22.6
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 2.4e-33 148.7 775 23.5
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 3.1e-33 148.3 494 25.3
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.0e-33 147.9 869 24.2
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 5.3e-33 147.5 158 42.4
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 6.9e-33 147.1 474 28.7
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 9.0e-33 146.7 474 27.4
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.0e-32 145.6 453 27.4
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 4.5e-32 144.4 498 27.5
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.8e-32 144.1 825 22.3
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.3e-31 142.9 610 24.1
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.8e-31 141.4 220 34.5
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 6.4e-31 140.6 536 26.7
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 1.4e-30 139.4 344 31.1
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.9e-30 139.0 441 26.8
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.2e-30 137.9 708 24.2
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 7.1e-30 137.1 820 23.5
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.6e-29 136.0 484 26.2
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.6e-29 136.0 226 34.5
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 2.7e-29 135.2 807 23.3
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 3.3e-27 128.3 414 28.0
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 3.1e-25 121.7 407 26.0
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 6.9e-25 120.6 828 24.0
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 3.4e-24 118.2 457 24.5
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 7.6e-24 117.1 727 23.5
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.8e-23 114.8 434 26.5
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.1e-22 113.2 398 26.1
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.9e-22 112.5 156 37.2
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 7.1e-22 110.5 764 21.3
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 9.3e-22 110.2 103 47.6
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.0e-20 106.7 642 21.8
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 3.0e-20 105.1 105 44.8
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 5.6e-19 100.9 72 58.3
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 4.0e-17 94.7 431 23.7
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 3.0e-12 78.6 390 22.6
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-12 77.8 92 45.7
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.9e-11 75.9 197 28.9
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.5e-11 75.5 426 23.2
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 2.5e-11 75.5 683 20.1
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.3e-10 73.2 147 28.6
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.6e-10 72.8 99 32.3
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.6e-10 72.8 440 22.7
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 2.2e-10 72.4 106 34.9
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 2.2e-10 72.4 106 34.9
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 2.2e-10 72.4 106 34.9
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 2.2e-10 72.4 106 34.9
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.8e-10 72.0 142 30.3
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.8e-10 72.0 139 29.5
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.7e-10 71.6 105 29.5
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.7e-10 71.6 105 29.5
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 4.8e-10 71.2 106 34.9
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 6.3e-10 70.9 106 33.0
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 8.2e-10 70.5 102 35.3
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.1e-09 70.1 75 40.0
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.4e-09 69.7 142 29.6
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 5.3e-09 67.8 101 30.7
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 6.9e-09 67.4 201 24.4
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 6.9e-09 67.4 201 24.4
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.5e-08 66.2 120 30.8
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 5.9e-08 64.3 409 20.8
HanXRQChr16g0506441 Helianthus annuus HOM05D001347 ORTHO05D001198 7.6e-08 63.9 91 36.3
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.0e-07 63.5 360 22.5
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 1.3e-07 63.2 371 25.1
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.3e-07 63.2 345 21.4
Zm00001eb390450 Zea mays HOM05D002487 ORTHO05D002748 1.3e-07 63.2 86 39.5
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.9e-07 62.0 348 24.4
Aa31LG11G760 Aethionema arabicum HOM05D002487 ORTHO05D002748 3.8e-07 61.6 86 34.9
Aa31LG11G780 Aethionema arabicum HOM05D002487 ORTHO05D002748 3.8e-07 61.6 86 34.9
AagrBONN_evm.TU.Sc2ySwM_228.1626 Anthoceros agrestis HOM05D001347 ORTHO05D001198 3.8e-07 61.6 146 34.2
Thhalv10010055m.g Eutrema salsugineum HOM05D002487 ORTHO05D002748 6.5e-07 60.8 86 36.0
Zm00001eb311820 Zea mays HOM05D001347 ORTHO05D001198 6.5e-07 60.8 148 30.4
Thhalv10003516m.g Eutrema salsugineum HOM05D002487 ORTHO05D002748 1.1e-06 60.1 109 30.3
Solyc07g049210.3 Solanum lycopersicum HOM05D001347 ORTHO05D001198 1.1e-06 60.1 124 33.1
AL5G27390 Arabidopsis lyrata HOM05D002487 ORTHO05D002748 1.4e-06 59.7 86 36.0
BolC9t53802H Brassica oleracea HOM05D002487 ORTHO05D002748 1.4e-06 59.7 86 36.0
Eucgr.I01296 Eucalyptus grandis HOM05D001347 ORTHO05D001198 1.4e-06 59.7 141 30.5
Zm00001eb099070 Zea mays HOM05D001347 ORTHO05D001198 1.4e-06 59.7 148 29.7
C09p08890 Brassica napus HOM05D002487 ORTHO05D002748 1.9e-06 59.3 86 34.9
Zm00001eb024560 Zea mays HOM05D002487 ORTHO05D002748 1.9e-06 59.3 86 37.2
AT3G48050 Arabidopsis thaliana HOM05D002487 ORTHO05D002748 2.5e-06 58.9 86 36.0
AT3G48060 Arabidopsis thaliana HOM05D002487 ORTHO05D002748 2.5e-06 58.9 86 36.0
BcaC04g23390 Brassica carinata HOM05D002487 ORTHO05D002748 2.5e-06 58.9 86 33.7
C09p08900 Brassica napus HOM05D002487 ORTHO05D002748 2.5e-06 58.9 86 34.9
BolC9t53803H Brassica oleracea HOM05D002487 ORTHO05D002748 2.5e-06 58.9 86 33.7
Haze_07455 Corylus avellana HOM05D002487 ORTHO05D002748 3.2e-06 58.5 95 35.8
Nitab4.5_0004644g0070 Nicotiana tabacum HOM05D001347 ORTHO05D001198 3.2e-06 58.5 124 32.3
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 4.2e-06 58.2 372 21.5
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 4.2e-06 58.2 580 23.8
AL8G39890 Arabidopsis lyrata HOM05D002487 ORTHO05D002748 5.5e-06 57.8 86 33.7
Cc05_g03190 Coffea canephora HOM05D001347 ORTHO05D001198 5.5e-06 57.8 85 37.6
AagrBONN_evm.TU.Sc2ySwM_344.2808 Anthoceros agrestis HOM05D004295 ORTHO05D004901 7.2e-06 57.4 367 24.5
BcaB02g09700 Brassica carinata HOM05D002487 ORTHO05D002748 7.2e-06 57.4 88 34.1
BraA09t36441Z Brassica rapa HOM05D002487 ORTHO05D002748 7.2e-06 57.4 87 34.5
Actinidia03598 Actinidia chinensis HOM05D001347 ORTHO05D001198 9.3e-06 57.0 109 33.9
Actinidia10805 Actinidia chinensis HOM05D001347 ORTHO05D001198 9.3e-06 57.0 109 33.9
A09p07890 Brassica napus HOM05D002487 ORTHO05D002748 9.3e-06 57.0 87 34.5
A09p07900 Brassica napus HOM05D002487 ORTHO05D002748 9.3e-06 57.0 87 34.5
BraA09t36440Z Brassica rapa HOM05D002487 ORTHO05D002748 9.3e-06 57.0 87 34.5
SEGI_29983 Sequoiadendron giganteum HOM05D001347 ORTHO05D001198 9.3e-06 57.0 109 31.2


User provided reference genes

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