Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0083s0037 Marchantia polymorpha HOM05D005376 ORTHO05D006481 4.1e-143 511.5 285 100.0
Pp3c5_19450 Physcomitrium patens HOM05D005376 ORTHO05D006481 5.1e-37 159.1 236 46.6
Pp3c5_19453 Physcomitrium patens HOM05D005376 ORTHO05D006481 5.1e-37 159.1 236 46.6
Pp3c16_8830 Physcomitrium patens HOM05D005376 ORTHO05D006481 1.3e-32 144.4 215 45.6
BcaC03g14530 Brassica carinata HOM05D005376 ORTHO05D006481 6.5e-32 142.1 211 46.9
BraA03t10859Z Brassica rapa HOM05D005376 ORTHO05D006481 1.1e-31 141.4 242 43.8
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 4.2e-31 139.4 218 44.0
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 1.2e-30 137.9 191 51.3
C02p19650 Brassica napus HOM05D005376 ORTHO05D006481 1.6e-30 137.5 211 46.0
Thhalv10014513m.g Eutrema salsugineum HOM05D005376 ORTHO05D006481 2.1e-30 137.1 233 45.1
BolC2t08101H Brassica oleracea HOM05D005376 ORTHO05D006481 3.6e-30 136.3 213 46.0
AagrBONN_evm.TU.Sc2ySwM_117.3925 Anthoceros agrestis HOM05D005376 ORTHO05D006481 6.1e-30 135.6 195 52.3
BcaB01g04203 Brassica carinata HOM05D005376 ORTHO05D006481 6.1e-30 135.6 225 44.4
Gohir.A09G042000 Gossypium hirsutum HOM05D005376 ORTHO05D006481 1.4e-29 134.4 181 49.2
A02p11810 Brassica napus HOM05D005376 ORTHO05D006481 1.8e-29 134.0 205 44.9
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 1.8e-29 134.0 238 43.7
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 2.3e-29 133.7 229 43.2
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 2.3e-29 133.7 231 44.6
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 2.3e-29 133.7 231 44.6
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 3.0e-29 133.3 229 45.9
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 3.9e-29 132.9 209 44.0
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 6.7e-29 132.1 234 43.6
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 8.8e-29 131.7 202 45.0
BcaC01g06187 Brassica carinata HOM05D005376 ORTHO05D006481 8.8e-29 131.7 231 44.2
Gohir.D09G043122 Gossypium hirsutum HOM05D005376 ORTHO05D006481 8.8e-29 131.7 222 42.8
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 1.5e-28 131.0 237 45.6
SEGI_07365 Sequoiadendron giganteum HOM05D005376 ORTHO05D006481 1.5e-28 131.0 226 46.0
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 2.6e-28 130.2 235 43.0
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 4.4e-28 129.4 172 47.1
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 4.4e-28 129.4 267 40.8
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 5.7e-28 129.0 277 39.7
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 1.3e-27 127.9 221 43.9
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 2.8e-27 126.7 216 46.8
Gorai.006G049600 Gossypium raimondii HOM05D005376 ORTHO05D006481 4.8e-27 125.9 233 40.8
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 4.8e-27 125.9 222 42.3
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 6.3e-27 125.6 203 44.3
Duzib205G1046 Durio zibethinus HOM05D005376 ORTHO05D006481 6.3e-27 125.6 262 40.5
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 6.3e-27 125.6 203 44.3
AUR62021148 Chenopodium quinoa HOM05D005376 ORTHO05D006481 8.2e-27 125.2 229 44.5
DCAR_009379 Daucus carota HOM05D005376 ORTHO05D006481 1.1e-26 124.8 222 43.2
Nn1g01558 Nelumbo nucifera HOM05D005376 ORTHO05D006481 1.1e-26 124.8 201 45.8
Glyma.20G161700 Glycine max HOM05D005376 ORTHO05D006481 1.4e-26 124.4 209 43.1
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 2.4e-26 123.6 261 38.7
AUR62031389 Chenopodium quinoa HOM05D005376 ORTHO05D006481 3.1e-26 123.2 203 44.3
CsaV3_3G017320 Cucumis sativus L. HOM05D005376 ORTHO05D006481 3.1e-26 123.2 216 43.1
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 3.1e-26 123.2 209 43.1
AT5G52440 Arabidopsis thaliana HOM05D005376 ORTHO05D006481 4.1e-26 122.9 218 40.8
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 4.1e-26 122.9 231 42.9
Migut.F01097 Erythranthe guttata HOM05D005376 ORTHO05D006481 4.1e-26 122.9 202 43.6
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 7.0e-26 122.1 135 54.1
FAN03G2197 Fragaria x ananassa HOM05D005376 ORTHO05D006481 9.1e-26 121.7 213 45.1
FAN03G2430 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.2e-25 121.3 184 48.4
TWI39G0402 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 1.2e-25 121.3 172 45.9
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 2.0e-25 120.6 236 42.8
Rhsim03G0188900 Rhododendron simsii HOM05D005376 ORTHO05D006481 2.0e-25 120.6 269 37.9
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 2.0e-25 120.6 257 40.5
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 2.6e-25 120.2 131 58.0
Potri.012G144300 Populus trichocarpa HOM05D005376 ORTHO05D006481 2.6e-25 120.2 226 42.0
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 2.6e-25 120.2 205 42.9
Oeu004115.1 Olea europaea HOM05D005376 ORTHO05D006481 4.5e-25 119.4 84 76.2
CARHR265430 Cardamine hirsuta HOM05D005376 ORTHO05D006481 5.9e-25 119.0 224 41.5
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 5.9e-25 119.0 224 43.3
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 7.7e-25 118.6 224 42.9
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.0e-24 118.2 224 43.3
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.0e-24 118.2 224 43.3
Hund04774 Selenicereus undatus HOM05D005376 ORTHO05D006481 1.0e-24 118.2 220 45.0
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 1.0e-24 118.2 129 55.0
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 1.3e-24 117.9 268 36.6
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 1.3e-24 117.9 129 57.4
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 2.2e-24 117.1 251 39.8
Migut.F00319 Erythranthe guttata HOM05D005376 ORTHO05D006481 2.2e-24 117.1 248 38.7
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 2.9e-24 116.7 262 38.2
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 2.9e-24 116.7 128 57.0
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 2.9e-24 116.7 167 44.3
EL10Ac3g05591 Beta vulgaris HOM05D005376 ORTHO05D006481 8.5e-24 115.2 247 39.7
ECA233G3491 Erigeron canadensis HOM05D005376 ORTHO05D006481 1.1e-23 114.8 208 42.3
FAN01G1606 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.1e-23 114.8 221 43.4
FAN10G0028 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.1e-23 114.8 227 43.2
FAN10G2308 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.1e-23 114.8 227 43.2
arahy.Tifrunner.gnm1.ann1.20ERFR Arachis hypogaea HOM05D005376 ORTHO05D006481 1.4e-23 114.4 156 48.7
RhsimUnG0027200 Rhododendron simsii HOM05D005376 ORTHO05D006481 1.9e-23 114.0 267 37.1
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 2.5e-23 113.6 156 48.7
MSTRG.27099 Avicennia marina HOM05D005376 ORTHO05D006481 2.5e-23 113.6 238 40.8
Phvul.007G073200 Phaseolus vulgaris HOM05D005376 ORTHO05D006481 2.5e-23 113.6 176 46.0
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 3.2e-23 113.2 214 41.6
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 3.2e-23 113.2 215 42.8
Haze_00025 Corylus avellana HOM05D005376 ORTHO05D006481 3.2e-23 113.2 262 40.5
Lsat_1_v5_gn_8_6901 Lactuca sativa HOM05D005376 ORTHO05D006481 3.2e-23 113.2 209 42.6
MCO14G251 Micromonas commoda HOM05D005376 ORTHO05D006481 3.2e-23 113.2 153 48.4
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 4.2e-23 112.8 189 47.6
HanXRQChr09g0252451 Helianthus annuus HOM05D005376 ORTHO05D006481 5.5e-23 112.5 212 43.9
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 5.5e-23 112.5 285 37.2
RcHm_v2.0_Chr1g0377931 Rosa chinensis HOM05D005376 ORTHO05D006481 7.2e-23 112.1 162 50.6
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 9.4e-23 111.7 135 50.4
Prupe.2G298400 Prunus persica HOM05D005376 ORTHO05D006481 9.4e-23 111.7 179 48.6
SMO223G0008 Selaginella moellendorffii HOM05D005376 ORTHO05D006481 9.4e-23 111.7 73 78.1
MBI17_g35259_MAGBIO Magnolia biondii HOM05D005376 ORTHO05D006481 1.6e-22 110.9 149 52.3
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 1.6e-22 110.9 180 48.9
Thecc.03G181600 Theobroma cacao HOM05D005376 ORTHO05D006481 2.1e-22 110.5 237 40.5
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 4.7e-22 109.4 191 47.6
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 6.1e-22 109.0 289 36.3
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 6.1e-22 109.0 199 43.2
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 1.0e-21 108.2 191 46.6
Sabra12G0108300 Salix brachista HOM05D005376 ORTHO05D006481 1.0e-21 108.2 292 34.9
Cc02_g02590 Coffea canephora HOM05D005376 ORTHO05D006481 1.4e-21 107.8 183 47.0
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 1.8e-21 107.5 135 51.9
MELO3C006928.2 Cucumis melo HOM05D005376 ORTHO05D006481 1.8e-21 107.5 263 39.5
MD07G1276100 Malus domestica HOM05D005376 ORTHO05D006481 1.8e-21 107.5 242 39.7
CBR_g49097 Chara braunii HOM05D005376 ORTHO05D006481 3.9e-21 106.3 212 37.7
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 6.7e-21 105.5 129 50.4
Sc19g0001360 Simmondsia chinensis HOM05D005376 ORTHO05D006481 1.5e-20 104.4 175 44.0
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 3.3e-20 103.2 216 40.3
COL.COLO4_28026 Corchorus olitorius HOM05D005376 ORTHO05D006481 5.7e-20 102.4 274 36.5
Hma1.2p1_0227F.1_g096040 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 1.7e-19 100.9 268 35.1
Cre08.g371650 Chlamydomonas reinhardtii HOM05D005376 ORTHO05D006481 2.2e-19 100.5 181 38.7
Nitab4.5_0000084g0270 Nicotiana tabacum HOM05D005376 ORTHO05D006481 8.2e-19 98.6 250 35.2
Manes.06G150900 Manihot esculenta HOM05D005376 ORTHO05D006481 1.4e-18 97.8 203 39.9
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 2.0e-17 94.0 204 37.3
Medtr1g100220 Medicago truncatula HOM05D005376 ORTHO05D006481 5.9e-17 92.4 218 38.5
TAR636G3226 Trochodendron aralioides HOM05D005376 ORTHO05D006481 7.7e-17 92.0 221 37.1
Psat6g193680 Pisum sativum HOM05D005376 ORTHO05D006481 2.9e-16 90.1 220 37.3
Nitab4.5_0001625g0010 Nicotiana tabacum HOM05D005376 ORTHO05D006481 3.8e-16 89.7 195 40.5
ECA232G4406 Erigeron canadensis HOM05D005376 ORTHO05D006481 1.5e-15 87.8 204 41.2
HPP92_028097 Vanilla planifolia HOM05D005376 ORTHO05D006481 1.6e-14 84.3 56 76.8
PGSC0003DMG400010161 Solanum tuberosum HOM05D005376 ORTHO05D006481 8.0e-14 82.0 234 34.2
Solyc03g025310.3 Solanum lycopersicum HOM05D005376 ORTHO05D006481 1.4e-13 81.3 149 43.6
CAN.G236.14 Capsicum annuum HOM05D005376 ORTHO05D006481 5.2e-13 79.3 243 37.0
Sopen03g004140 Solanum pennellii HOM05D005376 ORTHO05D006481 8.8e-13 78.6 190 39.5
PRCOL_00002629 Prasinoderma coloniale HOM05D005376 ORTHO05D006481 1.2e-12 78.2 174 33.9
Hund11730 Selenicereus undatus HOM05D005376 ORTHO05D006481 1.2e-12 78.2 230 34.3
Hma1.2p1_0044F.1_g025970 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 5.7e-12 75.9 106 42.5
Hma1.2p1_0299F.1_g117880 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 5.0e-08 62.8 103 39.8
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 1.9e-07 60.8 120 38.3
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 5.5e-07 59.3 93 40.9
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 9.4e-07 58.5 118 35.6
Lalb_Chr02g0141171 Lupinus albus HOM05D005376 ORTHO05D006481 1.2e-06 58.2 78 48.7
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 2.1e-06 57.4 132 34.8
BcaB01g04187 Brassica carinata HOM05D005376 ORTHO05D006481 3.6e-06 56.6 98 36.7
arahy.Tifrunner.gnm1.ann1.P8QCSH Arachis hypogaea HOM05D005376 ORTHO05D006481 4.7e-06 56.2 77 49.4
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 6.1e-06 55.8 64 50.0
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 6.1e-06 55.8 163 30.1
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 6.1e-06 55.8 94 38.3


User provided reference genes

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