Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 5.1e-196 687.6 348 100.0
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.9e-155 552.7 339 81.1
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 3.3e-155 552.0 339 81.1
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 3.3e-155 552.0 339 81.1
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 3.3e-155 552.0 339 81.1
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 2.8e-154 548.9 336 81.0
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 3.7e-154 548.5 322 82.6
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 6.3e-154 547.7 322 82.6
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 6.3e-154 547.7 322 82.6
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 1.1e-153 547.0 315 84.1
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 1.8e-153 546.2 322 82.3
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 2.4e-153 545.8 322 82.3
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 2.4e-153 545.8 322 81.1
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 2.4e-153 545.8 322 81.1
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 3.1e-153 545.4 318 83.6
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 5.3e-153 544.7 322 82.3
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 9.0e-153 543.9 315 84.1
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 1.2e-152 543.5 322 82.3
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 1.2e-152 543.5 322 81.7
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.5e-152 543.1 341 78.9
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 1.5e-152 543.1 322 82.0
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 1.5e-152 543.1 315 83.8
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 3.4e-152 542.0 322 81.1
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 3.4e-152 542.0 315 83.8
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 4.5e-152 541.6 322 81.1
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 5.9e-152 541.2 322 82.0
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 7.7e-152 540.8 322 81.7
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.0e-151 540.4 315 82.9
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 1.3e-151 540.0 322 81.4
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.3e-151 540.0 315 83.5
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.7e-151 539.7 322 80.7
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 1.7e-151 539.7 322 81.4
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 2.2e-151 539.3 322 81.7
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 2.2e-151 539.3 315 82.5
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 2.2e-151 539.3 315 81.6
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 2.2e-151 539.3 320 80.9
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 2.9e-151 538.9 339 77.9
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 2.9e-151 538.9 338 78.1
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 5.0e-151 538.1 310 84.8
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 6.5e-151 537.7 322 80.4
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 6.5e-151 537.7 315 81.3
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 6.5e-151 537.7 315 82.2
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 6.5e-151 537.7 315 82.2
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 8.5e-151 537.3 322 80.7
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 1.4e-150 536.6 322 81.7
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 1.9e-150 536.2 322 80.4
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 1.9e-150 536.2 315 82.9
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.9e-150 536.2 315 82.2
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 1.9e-150 536.2 321 80.7
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 2.5e-150 535.8 321 79.8
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 3.2e-150 535.4 315 81.6
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 3.2e-150 535.4 348 77.0
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 4.2e-150 535.0 315 81.0
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 4.2e-150 535.0 315 81.9
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 4.2e-150 535.0 314 82.5
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 4.2e-150 535.0 315 82.2
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 4.2e-150 535.0 322 80.7
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 5.5e-150 534.6 322 81.1
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 5.5e-150 534.6 322 80.7
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 5.5e-150 534.6 322 80.7
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 5.5e-150 534.6 322 80.1
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 7.2e-150 534.3 322 80.4
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 7.2e-150 534.3 315 81.9
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 7.2e-150 534.3 315 81.9
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 7.2e-150 534.3 322 80.7
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 7.2e-150 534.3 338 78.7
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 7.2e-150 534.3 320 80.6
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 9.4e-150 533.9 322 79.5
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 1.2e-149 533.5 315 82.5
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 1.2e-149 533.5 338 76.3
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 1.6e-149 533.1 315 82.9
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.6e-149 533.1 338 78.4
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 2.1e-149 532.7 322 79.5
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 2.7e-149 532.3 304 84.5
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 2.7e-149 532.3 322 79.8
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 3.6e-149 531.9 315 81.3
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 3.6e-149 531.9 338 78.1
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 3.6e-149 531.9 320 80.3
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 3.6e-149 531.9 320 80.0
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 3.6e-149 531.9 322 81.1
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 4.6e-149 531.6 320 80.3
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 4.6e-149 531.6 322 79.8
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 6.1e-149 531.2 315 81.6
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 7.9e-149 530.8 322 80.4
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 7.9e-149 530.8 320 80.6
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 1.4e-148 530.0 315 81.3
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 1.4e-148 530.0 322 79.5
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 3.9e-148 528.5 321 79.4
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 6.7e-148 527.7 315 81.3
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 6.7e-148 527.7 337 76.6
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 1.1e-147 526.9 315 81.9
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 1.1e-147 526.9 333 77.8
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.5e-147 526.6 340 77.4
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 3.3e-147 525.4 352 74.7
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 3.3e-147 525.4 345 74.5
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 3.3e-147 525.4 315 80.6
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 4.3e-147 525.0 320 80.0
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 5.7e-147 524.6 315 80.0
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 9.7e-147 523.9 316 80.1
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 6.3e-146 521.2 315 79.0
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 8.2e-146 520.8 321 78.5
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 2.4e-145 519.2 321 77.6
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 9.1e-145 517.3 304 81.2
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 1.2e-144 516.9 351 73.5
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 2.6e-144 515.8 320 76.9
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 2.6e-144 515.8 331 76.1
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 2.7e-141 505.8 316 78.8
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 2.3e-140 502.7 353 72.2
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 5.7e-139 498.0 311 77.2
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 2.8e-138 495.7 319 76.2
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 3.7e-138 495.4 345 71.9
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 7.0e-137 491.1 377 67.9
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 4.5e-136 488.4 315 75.2
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 3.8e-135 485.3 310 76.8
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 1.9e-134 483.0 315 75.9
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 1.0e-132 477.2 317 72.2
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 1.0e-127 460.7 315 73.3
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 3.5e-120 435.6 315 67.3
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 8.6e-111 404.4 240 82.5
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 2.5e-110 402.9 250 80.4
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 4.0e-108 395.6 315 65.1
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 1.1e-105 387.5 248 77.4
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 2.3e-103 379.8 228 81.1
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 1.9e-102 376.7 315 62.2
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 1.8e-100 370.2 233 76.0
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 3.7e-98 362.5 208 85.6
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 1.1e-97 360.9 285 66.0
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 6.8e-92 341.7 214 76.2
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 8.9e-92 341.3 325 54.8
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 7.5e-91 338.2 196 84.2
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 2.2e-90 336.7 219 76.7
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 3.2e-89 332.8 203 80.8
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 6.0e-88 328.6 199 79.4
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 2.9e-82 309.7 324 53.1
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 3.9e-79 299.3 242 64.5
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 3.8e-74 282.7 192 72.4
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 3.5e-72 276.2 195 67.7
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 7.6e-67 258.5 171 74.9
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.8e-60 237.3 135 85.9
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 1.7e-50 204.1 155 65.2
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 2.5e-49 200.3 142 69.7
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 3.7e-45 186.4 127 67.7
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 6.5e-42 175.6 148 64.2
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 2.2e-37 160.6 87 89.7
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 3.6e-32 143.3 85 83.5
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 6.7e-31 139.0 82 81.7
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 4.8e-29 132.9 87 72.4
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 4.8e-29 132.9 78 78.2
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 6.3e-29 132.5 113 61.1
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 8.2e-29 132.1 86 70.9
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 3.1e-28 130.2 74 81.1
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 1.4e-20 104.8 306 30.4
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 3.1e-20 103.6 127 50.4
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 4.5e-19 99.8 124 51.6
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 8.5e-18 95.5 281 31.0
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 9.4e-17 92.0 310 27.1
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 3.6e-16 90.1 75 57.3
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 6.1e-16 89.4 208 30.3
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 1.0e-15 88.6 73 60.3
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 2.2e-13 80.9 267 31.1
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 4.1e-12 76.6 91 46.2
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.0e-11 74.3 60 58.3
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 1.0e-10 72.0 249 27.7
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.2e-10 70.9 103 43.7
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 3.6e-08 63.5 52 67.3
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 1.5e-06 58.2 42 66.7


User provided reference genes

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