Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 3.1e-107 391.7 188 100.0
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.8e-99 365.9 184 94.0
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 2.0e-98 362.5 182 91.2
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 1.7e-97 359.4 182 90.7
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 3.8e-97 358.2 182 90.1
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 1.1e-96 356.7 182 89.6
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 1.9e-96 355.9 182 89.6
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 1.9e-96 355.9 182 90.1
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 2.5e-96 355.5 182 90.1
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 3.2e-96 355.1 182 90.7
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 3.2e-96 355.1 182 88.5
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.2e-96 354.8 182 89.0
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 5.5e-96 354.4 188 86.7
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 5.5e-96 354.4 187 88.2
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 7.2e-96 354.0 182 89.6
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 7.2e-96 354.0 182 89.6
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 7.2e-96 354.0 182 87.9
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 7.2e-96 354.0 182 89.0
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 1.2e-95 353.2 182 89.6
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 1.2e-95 353.2 182 88.5
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.2e-95 353.2 183 90.2
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 1.2e-95 353.2 182 89.0
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.6e-95 352.8 182 87.9
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 2.1e-95 352.4 182 87.9
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 2.1e-95 352.4 182 87.9
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 2.1e-95 352.4 182 89.6
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 2.1e-95 352.4 183 89.1
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 2.7e-95 352.1 182 90.1
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 2.7e-95 352.1 182 87.9
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 2.7e-95 352.1 182 87.9
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 2.7e-95 352.1 182 90.1
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 2.7e-95 352.1 182 88.5
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 2.7e-95 352.1 182 87.9
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 3.6e-95 351.7 182 88.5
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 3.6e-95 351.7 182 88.5
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 3.6e-95 351.7 182 89.0
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 4.6e-95 351.3 182 89.6
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 4.6e-95 351.3 182 89.0
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 4.6e-95 351.3 182 89.0
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 4.6e-95 351.3 182 87.9
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 6.1e-95 350.9 182 87.4
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.1e-95 350.9 182 88.5
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 6.1e-95 350.9 183 89.6
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 6.1e-95 350.9 182 87.9
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.9e-95 350.5 182 89.0
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.9e-95 350.5 182 89.0
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.9e-95 350.5 182 89.0
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 7.9e-95 350.5 182 87.9
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 7.9e-95 350.5 182 88.5
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 7.9e-95 350.5 182 86.8
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 1.0e-94 350.1 182 86.8
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 1.0e-94 350.1 182 87.9
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.0e-94 350.1 182 86.3
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 1.0e-94 350.1 182 87.4
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 1.4e-94 349.7 182 88.5
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.4e-94 349.7 182 87.9
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.4e-94 349.7 182 87.9
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 1.4e-94 349.7 182 87.4
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 1.4e-94 349.7 182 87.4
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 1.4e-94 349.7 182 87.9
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 1.4e-94 349.7 182 87.9
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.8e-94 349.4 182 88.5
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.8e-94 349.4 182 87.9
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.8e-94 349.4 182 87.9
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.8e-94 349.4 182 87.4
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.8e-94 349.4 182 88.5
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 2.3e-94 349.0 187 86.1
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 2.3e-94 349.0 182 86.8
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 2.3e-94 349.0 182 86.8
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 2.3e-94 349.0 182 86.8
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 2.3e-94 349.0 182 87.4
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 2.3e-94 349.0 182 87.4
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 2.3e-94 349.0 182 87.4
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 2.3e-94 349.0 182 87.4
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 2.3e-94 349.0 182 87.4
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 2.3e-94 349.0 182 87.4
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 2.3e-94 349.0 182 86.8
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 2.3e-94 349.0 182 87.9
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 3.0e-94 348.6 182 87.4
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.0e-94 348.6 182 87.9
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.0e-94 348.6 182 87.9
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.0e-94 348.6 187 85.6
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.0e-94 348.6 187 85.6
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 3.0e-94 348.6 182 86.8
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 3.9e-94 348.2 182 87.4
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 3.9e-94 348.2 182 87.4
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 3.9e-94 348.2 182 87.4
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 5.1e-94 347.8 182 86.8
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 5.1e-94 347.8 182 86.8
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 6.7e-94 347.4 182 87.4
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 6.7e-94 347.4 182 87.4
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 6.7e-94 347.4 182 86.8
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 8.8e-94 347.1 187 83.4
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 8.8e-94 347.1 187 83.4
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 8.8e-94 347.1 182 87.9
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 8.8e-94 347.1 182 87.9
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 1.1e-93 346.7 182 89.0
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.1e-93 346.7 182 87.4
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.5e-93 346.3 182 86.8
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 1.5e-93 346.3 187 84.0
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 1.5e-93 346.3 182 86.3
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 2.0e-93 345.9 187 83.4
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 2.0e-93 345.9 182 86.8
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 2.6e-93 345.5 182 86.8
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 4.4e-93 344.7 187 84.0
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 5.7e-93 344.4 182 85.7
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 5.7e-93 344.4 182 85.7
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 5.7e-93 344.4 182 85.7
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 5.7e-93 344.4 182 85.7
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 5.7e-93 344.4 182 86.8
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 5.7e-93 344.4 182 86.3
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 7.4e-93 344.0 182 85.7
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 7.4e-93 344.0 187 82.9
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 9.7e-93 343.6 184 89.1
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 1.7e-92 342.8 182 84.6
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 1.7e-92 342.8 182 84.6
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.7e-92 342.8 194 83.5
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 2.2e-92 342.4 187 82.4
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 2.2e-92 342.4 190 83.7
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 3.7e-92 341.7 187 81.8
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 3.7e-92 341.7 182 85.7
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 4.8e-92 341.3 182 85.2
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 6.3e-92 340.9 182 84.6
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 6.3e-92 340.9 182 84.6
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 6.3e-92 340.9 182 84.6
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 6.3e-92 340.9 185 84.9
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 8.2e-92 340.5 182 84.6
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.1e-91 340.1 202 79.2
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 3.1e-91 338.6 187 81.3
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 3.1e-91 338.6 182 84.6
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 5.3e-91 337.8 187 82.4
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 6.9e-91 337.4 183 82.5
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 9.1e-91 337.0 182 85.2
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 9.1e-91 337.0 182 83.5
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 2.0e-90 335.9 182 83.0
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 3.4e-90 335.1 185 81.6
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 3.4e-90 335.1 182 84.1
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 8.8e-86 320.5 183 83.6
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 3.3e-85 318.5 248 63.7
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.1e-83 313.5 191 75.4
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 6.5e-81 304.3 157 87.3
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 3.0e-78 295.4 152 88.2
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.8e-76 288.1 182 76.4
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 2.9e-73 278.9 163 81.6
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 7.2e-72 274.2 136 93.4
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 2.1e-71 272.7 138 89.1
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 5.7e-69 264.6 138 86.2
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.9e-65 252.3 130 86.9
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.6e-63 246.5 136 80.9
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 2.1e-63 246.1 128 85.2
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.7e-63 245.0 160 73.8
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.0e-62 242.3 185 68.6
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 8.8e-62 240.7 182 68.7
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 4.4e-61 238.4 144 77.1
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 6.3e-60 234.6 188 56.9
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 1.6e-55 219.9 187 54.0
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 1.1e-51 207.2 166 65.1
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 4.7e-47 191.8 157 63.7
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.5e-40 169.5 90 81.1
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.7e-39 165.2 90 80.0
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.6e-37 159.5 90 78.9
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.6e-37 159.5 87 79.3
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.4e-37 159.1 103 69.9
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 9.9e-37 157.5 87 78.2
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 1.7e-36 156.8 87 78.2
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.9e-36 156.0 157 51.6
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.4e-36 154.8 87 78.2
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.1e-35 154.1 87 77.0
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.1e-35 154.1 87 77.0
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 7.8e-34 147.9 93 76.3
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 1.0e-33 147.5 92 77.2
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.0e-33 146.0 87 75.9
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 2.8e-31 139.4 70 92.9
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.4e-30 136.3 79 75.9
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 1.4e-27 127.1 69 72.5
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-22 110.5 62 74.2
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-22 110.5 62 74.2
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-22 110.5 62 74.2
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-22 110.5 62 74.2
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-22 110.5 62 74.2
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-22 110.5 62 74.2
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 3.1e-14 82.8 41 95.1
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 2.6e-13 79.7 44 81.8
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 1.0e-09 67.8 44 72.7


User provided reference genes

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