Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 1.8e-142 509.2 257 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 1.4e-94 350.1 256 70.3
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 2.7e-85 319.3 258 62.8
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 6.0e-85 318.2 259 65.6
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 2.3e-84 316.2 245 64.9
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 5.6e-83 311.6 229 68.6
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 5.6e-83 311.6 229 68.6
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 8.1e-82 307.8 252 62.7
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 1.4e-81 307.0 259 62.2
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 1.4e-81 307.0 221 69.2
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 4.0e-81 305.4 254 61.4
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 5.2e-81 305.1 250 63.6
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 5.2e-81 305.1 261 64.0
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 2.0e-80 303.1 254 63.0
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 4.4e-80 302.0 252 64.3
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 4.4e-80 302.0 255 62.0
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 1.7e-79 300.1 252 61.1
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 2.2e-79 299.7 252 63.5
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 2.9e-79 299.3 251 61.8
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 2.9e-79 299.3 252 61.1
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 3.7e-79 298.9 250 60.4
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 3.7e-79 298.9 251 62.5
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 4.9e-79 298.5 250 61.2
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 4.9e-79 298.5 252 62.3
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 6.4e-79 298.1 250 60.4
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 8.3e-79 297.7 251 61.8
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 8.3e-79 297.7 250 61.2
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 1.1e-78 297.4 257 60.7
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 1.1e-78 297.4 251 61.4
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 1.4e-78 297.0 224 66.1
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 1.4e-78 297.0 250 60.8
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 1.4e-78 297.0 260 60.8
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 1.4e-78 297.0 256 60.9
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 1.9e-78 296.6 256 61.3
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 1.9e-78 296.6 251 61.0
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 2.4e-78 296.2 249 62.2
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 2.4e-78 296.2 252 62.3
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 3.2e-78 295.8 252 60.3
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 4.1e-78 295.4 254 60.6
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 7.1e-78 294.7 248 61.7
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 7.1e-78 294.7 255 60.0
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 7.1e-78 294.7 250 61.6
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 9.2e-78 294.3 255 60.0
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 9.2e-78 294.3 226 64.6
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 1.2e-77 293.9 256 60.9
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 1.2e-77 293.9 250 61.2
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 1.2e-77 293.9 255 60.4
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 1.6e-77 293.5 255 59.2
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 1.6e-77 293.5 259 59.5
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 2.1e-77 293.1 254 61.0
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 2.1e-77 293.1 224 66.1
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 2.7e-77 292.7 255 61.6
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 2.7e-77 292.7 223 66.8
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 3.5e-77 292.4 255 59.2
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 3.5e-77 292.4 250 61.6
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 4.6e-77 292.0 255 60.4
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 4.6e-77 292.0 255 60.8
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 4.6e-77 292.0 249 61.4
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 6.0e-77 291.6 241 63.1
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 7.8e-77 291.2 252 60.7
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 7.8e-77 291.2 248 61.3
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 1.3e-76 290.4 253 58.9
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 1.3e-76 290.4 253 61.3
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 1.3e-76 290.4 252 59.9
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 1.7e-76 290.0 224 65.6
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 3.0e-76 289.3 255 60.8
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 3.0e-76 289.3 277 57.0
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 3.9e-76 288.9 263 59.7
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 5.1e-76 288.5 217 67.3
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 6.6e-76 288.1 254 61.4
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 6.6e-76 288.1 240 62.5
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 8.6e-76 287.7 250 60.4
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 1.1e-75 287.3 253 59.3
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 1.5e-75 287.0 248 60.9
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 2.5e-75 286.2 257 57.6
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 2.5e-75 286.2 257 57.6
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 4.3e-75 285.4 218 66.1
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 5.6e-75 285.0 252 57.9
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 5.6e-75 285.0 237 62.4
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 5.6e-75 285.0 254 60.2
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 7.3e-75 284.6 218 65.6
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 7.3e-75 284.6 253 56.9
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 9.5e-75 284.3 233 62.2
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.6e-74 283.5 267 57.7
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 2.1e-74 283.1 255 58.0
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 2.8e-74 282.7 218 65.1
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 2.8e-74 282.7 218 65.1
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 2.8e-74 282.7 253 60.1
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 2.8e-74 282.7 253 60.1
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 6.2e-74 281.6 251 58.2
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 5.8e-72 275.0 268 56.7
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 2.2e-71 273.1 218 62.4
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 2.9e-71 272.7 239 57.7
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 2.9e-71 272.7 237 59.9
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 8.4e-71 271.2 239 57.3
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 8.4e-71 271.2 242 59.9
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 9.2e-70 267.7 307 50.8
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 1.6e-69 266.9 311 48.6
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 2.7e-69 266.2 235 57.9
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 1.0e-68 264.2 237 57.0
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 6.6e-68 261.5 250 56.8
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 1.2e-66 257.3 249 55.8
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 3.6e-66 255.8 225 60.9
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 4.9e-63 245.4 192 63.5
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.4e-62 243.0 164 72.0
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.7e-60 236.9 179 64.8
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 1.1e-59 234.2 259 52.1
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 3.6e-58 229.2 161 68.9
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 9.0e-57 224.6 257 51.4
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 8.4e-55 218.0 210 55.7
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 1.4e-54 217.2 210 54.8
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 7.1e-54 214.9 196 59.2
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 2.1e-53 213.4 197 56.9
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 3.0e-52 209.5 184 59.2
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 5.8e-48 195.3 175 58.3
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 4.9e-47 192.2 219 51.1
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 2.7e-45 186.4 231 47.6
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 4.0e-41 172.6 115 70.4
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 2.9e-39 166.4 218 47.7
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 1.9e-38 163.7 116 65.5
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 2.3e-36 156.8 258 40.3
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.4e-33 147.5 101 69.3
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 3.8e-31 139.4 149 53.7
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 6.3e-26 122.1 144 50.7
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.2e-24 117.9 141 48.9
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 9.4e-22 108.2 64 71.9
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 8.8e-20 101.7 83 61.4
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 7.4e-19 98.6 117 47.0
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 3.1e-17 93.2 54 74.1
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 1.2e-16 91.3 55 74.5
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 1.8e-12 77.4 73 57.5
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 1.1e-11 74.7 74 54.1
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 2.0e-11 73.9 139 37.4
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 4.4e-11 72.8 68 52.9
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-09 67.8 87 44.8
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 1.8e-09 67.4 39 76.9
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 2.4e-09 67.0 78 48.7
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 7.0e-09 65.5 40 72.5
TAR005G0002 Trochodendron aralioides HOM05D005643 ORTHO05D006819 2.5e-06 57.0 67 46.3


User provided reference genes

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