Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 9.6e-81 303.5 163 100.0
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 9.8e-33 144.1 170 50.6
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 1.4e-31 140.2 163 47.9
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 7.7e-30 134.4 171 49.7
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 1.9e-28 129.8 167 48.5
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 2.5e-28 129.4 170 48.2
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 4.2e-28 128.6 170 49.4
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 1.2e-27 127.1 167 47.3
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 2.8e-27 125.9 172 44.2
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 2.8e-27 125.9 169 46.2
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 3.6e-27 125.6 167 46.7
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 1.0e-26 124.0 170 45.9
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 1.4e-26 123.6 170 43.5
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.3e-26 122.9 172 43.6
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.3e-26 122.9 170 45.9
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.0e-26 122.5 169 47.9
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 4.0e-26 122.1 173 48.0
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 4.0e-26 122.1 170 44.7
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 4.0e-26 122.1 170 46.5
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 4.0e-26 122.1 170 45.9
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 8.9e-26 120.9 170 45.3
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 8.9e-26 120.9 169 47.3
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 8.9e-26 120.9 170 44.7
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.2e-25 120.6 170 45.9
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 1.2e-25 120.6 170 44.7
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 1.2e-25 120.6 169 45.6
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 2.0e-25 119.8 169 46.2
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 2.0e-25 119.8 165 47.9
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 2.6e-25 119.4 138 47.1
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 2.6e-25 119.4 171 43.3
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 2.6e-25 119.4 172 41.3
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 3.4e-25 119.0 168 44.0
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 3.4e-25 119.0 170 46.5
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 4.4e-25 118.6 170 45.9
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 4.4e-25 118.6 170 44.1
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 5.7e-25 118.2 162 45.7
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 5.7e-25 118.2 136 50.7
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 5.7e-25 118.2 170 46.5
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 7.5e-25 117.9 167 44.9
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 7.5e-25 117.9 170 44.7
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 9.8e-25 117.5 170 45.9
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.3e-24 117.1 170 44.1
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.7e-24 116.7 171 44.4
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.7e-24 116.7 170 45.9
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 2.2e-24 116.3 165 44.8
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 2.2e-24 116.3 162 43.8
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 2.2e-24 116.3 171 44.4
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.8e-24 115.9 173 44.5
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 2.8e-24 115.9 168 43.5
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 2.8e-24 115.9 164 42.1
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 2.8e-24 115.9 170 44.7
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 2.8e-24 115.9 166 43.4
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.7e-24 115.5 171 45.6
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 3.7e-24 115.5 171 43.3
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 4.9e-24 115.2 169 44.4
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 4.9e-24 115.2 165 43.6
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 4.9e-24 115.2 168 42.9
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 4.9e-24 115.2 170 44.7
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 6.3e-24 114.8 169 44.4
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 6.3e-24 114.8 164 45.1
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 8.3e-24 114.4 165 44.2
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 8.3e-24 114.4 168 43.5
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 8.3e-24 114.4 169 46.7
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 8.3e-24 114.4 168 44.0
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 8.3e-24 114.4 167 43.1
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 8.3e-24 114.4 170 44.1
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 1.1e-23 114.0 170 43.5
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.1e-23 114.0 170 44.1
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.1e-23 114.0 170 43.5
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 1.1e-23 114.0 167 44.3
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 1.4e-23 113.6 173 45.1
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 1.4e-23 113.6 170 44.7
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 1.4e-23 113.6 170 44.7
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 1.4e-23 113.6 168 45.2
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 1.4e-23 113.6 171 45.6
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 1.8e-23 113.2 170 43.5
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 1.8e-23 113.2 170 43.5
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 1.8e-23 113.2 170 43.5
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.8e-23 113.2 169 43.2
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 1.8e-23 113.2 170 41.8
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 1.8e-23 113.2 168 43.5
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 1.8e-23 113.2 171 46.2
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 2.4e-23 112.8 171 46.2
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 2.4e-23 112.8 169 44.4
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 3.2e-23 112.5 163 43.6
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 3.2e-23 112.5 169 43.8
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 3.2e-23 112.5 169 43.8
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 3.2e-23 112.5 167 43.1
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 3.2e-23 112.5 169 43.8
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 3.2e-23 112.5 168 43.5
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 3.2e-23 112.5 169 43.8
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 3.2e-23 112.5 171 45.0
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 4.1e-23 112.1 170 44.7
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 4.1e-23 112.1 168 42.9
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 4.1e-23 112.1 169 42.0
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 4.1e-23 112.1 168 44.0
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 5.4e-23 111.7 169 42.6
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 7.0e-23 111.3 173 40.5
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 7.0e-23 111.3 168 39.9
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 9.2e-23 110.9 165 46.7
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.2e-22 110.5 164 42.1
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 1.6e-22 110.2 167 42.5
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 1.6e-22 110.2 170 44.1
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.6e-22 110.2 161 42.9
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.6e-22 110.2 171 45.6
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.6e-22 110.2 170 42.4
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 2.0e-22 109.8 167 42.5
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 2.0e-22 109.8 167 42.5
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 2.0e-22 109.8 168 42.3
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 3.5e-22 109.0 168 43.5
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 3.5e-22 109.0 168 43.5
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 4.5e-22 108.6 168 43.5
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 4.5e-22 108.6 168 42.9
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 5.9e-22 108.2 170 43.5
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 5.9e-22 108.2 164 42.1
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 5.9e-22 108.2 170 43.5
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 5.9e-22 108.2 168 43.5
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 5.9e-22 108.2 169 41.4
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 7.8e-22 107.8 171 42.1
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 7.8e-22 107.8 171 42.1
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 1.0e-21 107.5 164 40.2
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 1.3e-21 107.1 164 42.1
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.7e-21 106.7 160 43.8
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 2.9e-21 105.9 170 41.8
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 2.9e-21 105.9 170 41.2
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 2.9e-21 105.9 170 40.6
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 2.9e-21 105.9 171 42.1
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 3.9e-21 105.5 168 43.5
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 3.9e-21 105.5 169 40.8
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 3.9e-21 105.5 176 42.6
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 6.6e-21 104.8 171 42.7
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 8.6e-21 104.4 170 41.8
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 1.1e-20 104.0 172 43.6
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 1.1e-20 104.0 168 41.7
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.5e-20 103.6 172 43.0
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.9e-20 103.2 170 42.4
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.5e-20 102.8 164 42.7
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 2.5e-20 102.8 172 42.4
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 2.5e-20 102.8 172 42.4
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 2.5e-20 102.8 169 37.9
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 2.5e-20 102.8 147 48.3
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 3.3e-20 102.4 170 41.2
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 3.3e-20 102.4 172 43.0
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 4.3e-20 102.1 158 40.5
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 5.6e-20 101.7 103 48.5
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 5.6e-20 101.7 168 39.3
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 7.3e-20 101.3 156 44.2
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 2.1e-19 99.8 168 39.9
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 3.6e-19 99.0 169 43.2
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 4.7e-19 98.6 153 43.1
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 1.0e-18 97.4 98 51.0
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.4e-18 97.1 101 47.5
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 3.1e-18 95.9 101 47.5
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 4.0e-18 95.5 168 38.1
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 4.0e-18 95.5 168 38.1
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 5.2e-18 95.1 169 37.3
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 6.0e-14 81.6 141 42.6
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.7e-13 80.1 216 32.9
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.5e-12 77.0 71 53.5
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 9.5e-12 74.3 71 52.1
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.6e-09 66.2 76 50.0


User provided reference genes

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