Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0078s0003 Marchantia polymorpha HOM05D006647 ORTHO05D008232 9.0e-173 610.1 306 100.0
Manes.07G004100 Manihot esculenta HOM05D006647 ORTHO05D008232 2.7e-68 263.1 233 57.1
ATR0605G070 Amborella trichopoda HOM05D006647 ORTHO05D008232 6.0e-68 261.9 198 60.6
MD07G1006600 Malus domestica HOM05D006647 ORTHO05D008232 6.0e-68 261.9 257 55.3
PSO339G5555 Papaver somniferum HOM05D006647 ORTHO05D008232 7.9e-68 261.5 200 63.0
TAR633G0758 Trochodendron aralioides HOM05D006647 ORTHO05D008232 7.9e-68 261.5 223 57.4
Dinv09377 Davidia involucrata HOM05D006647 ORTHO05D008232 1.0e-67 261.2 225 57.3
Ciclev10032303m.g Citrus clementina HOM05D006647 ORTHO05D008232 1.8e-67 260.4 243 54.3
HPP92_015763 Vanilla planifolia HOM05D006647 ORTHO05D008232 3.0e-67 259.6 201 63.7
DCAR_006301 Daucus carota HOM05D006647 ORTHO05D008232 5.1e-67 258.8 174 68.4
Hma1.2p1_0929F.1_g237940 Hydrangea macrophylla HOM05D006647 ORTHO05D008232 6.7e-67 258.5 211 58.3
TPR.G12287 Trifolium pratense HOM05D006647 ORTHO05D008232 6.7e-67 258.5 229 55.0
Prupe.2G009700 Prunus persica HOM05D006647 ORTHO05D008232 8.7e-67 258.1 249 53.4
THA.LOC104801981 Tarenaya hassleriana HOM05D006647 ORTHO05D008232 1.1e-66 257.7 231 55.4
Lj9A629T102 Lonicera japonica HOM05D006647 ORTHO05D008232 1.9e-66 256.9 213 56.8
CsaV3_7G031240 Cucumis sativus L. HOM05D006647 ORTHO05D008232 2.5e-66 256.5 271 49.1
Thhalv10006150m.g Eutrema salsugineum HOM05D006647 ORTHO05D008232 2.5e-66 256.5 208 56.7
CiPaw.13G002900 Carya illinoinensis HOM05D006647 ORTHO05D008232 3.3e-66 256.1 190 64.7
AUR62009372 Chenopodium quinoa HOM05D006647 ORTHO05D008232 3.3e-66 256.1 199 61.3
GSVIVG01032057001 Vitis vinifera HOM05D006647 ORTHO05D008232 4.3e-66 255.8 206 60.7
Eucgr.G03394 Eucalyptus grandis HOM05D006647 ORTHO05D008232 5.7e-66 255.4 185 64.3
Peaxi162Scf00428g00819 Petunia axillaris HOM05D006647 ORTHO05D008232 5.7e-66 255.4 240 55.0
FAN03G0714 Fragaria x ananassa HOM05D006647 ORTHO05D008232 9.6e-66 254.6 199 61.8
Lalb_Chr25g0283211 Lupinus albus HOM05D006647 ORTHO05D008232 1.3e-65 254.2 212 57.5
PSO384G2587 Papaver somniferum HOM05D006647 ORTHO05D008232 1.3e-65 254.2 185 64.3
AL5G46420 Arabidopsis lyrata HOM05D006647 ORTHO05D008232 1.6e-65 253.8 199 59.3
CARHR291410 Cardamine hirsuta HOM05D006647 ORTHO05D008232 1.6e-65 253.8 174 65.5
Sc11g0009300 Simmondsia chinensis HOM05D006647 ORTHO05D008232 1.6e-65 253.8 187 65.2
Psat5g204920 Pisum sativum HOM05D006647 ORTHO05D008232 2.1e-65 253.4 227 54.6
Atru.chr11.2639 Acer truncatum HOM05D006647 ORTHO05D008232 2.8e-65 253.1 207 58.0
CANSAT01G0516 Cannabis sativa HOM05D006647 ORTHO05D008232 2.8e-65 253.1 185 63.8
HanXRQChr01g0017301 Helianthus annuus HOM05D006647 ORTHO05D008232 2.8e-65 253.1 186 63.4
Nn2g15502 Nelumbo nucifera HOM05D006647 ORTHO05D008232 4.8e-65 252.3 211 58.3
TWI73G0313 Tripterygium wilfordii HOM05D006647 ORTHO05D008232 4.8e-65 252.3 200 61.5
A03p38460 Brassica napus HOM05D006647 ORTHO05D008232 6.2e-65 251.9 209 57.9
Carub.0005s3017 Capsella rubella HOM05D006647 ORTHO05D008232 6.2e-65 251.9 199 58.8
Cfa010738 Carpinus fangiana HOM05D006647 ORTHO05D008232 6.2e-65 251.9 232 56.0
Phvul.005G036700 Phaseolus vulgaris HOM05D006647 ORTHO05D008232 6.2e-65 251.9 204 58.8
Sp1g00030 Schrenkiella parvula HOM05D006647 ORTHO05D008232 6.2e-65 251.9 187 62.0
Sp5g00020 Schrenkiella parvula HOM05D006647 ORTHO05D008232 6.2e-65 251.9 187 62.0
VMungo1080G0119 Vigna mungo HOM05D006647 ORTHO05D008232 6.2e-65 251.9 204 57.4
MSTRG.5006 Avicennia marina HOM05D006647 ORTHO05D008232 8.2e-65 251.5 197 61.4
BraA03t12997Z Brassica rapa HOM05D006647 ORTHO05D008232 8.2e-65 251.5 174 64.9
Haze_03236 Corylus avellana HOM05D006647 ORTHO05D008232 8.2e-65 251.5 231 56.3
Glyma.08G152700 Glycine max HOM05D006647 ORTHO05D008232 8.2e-65 251.5 232 54.7
Pp3c8_11960 Physcomitrium patens HOM05D006647 ORTHO05D008232 8.2e-65 251.5 168 67.3
RcHm_v2.0_Chr1g0314911 Rosa chinensis HOM05D006647 ORTHO05D008232 8.2e-65 251.5 174 67.2
BcaC01g03971 Brassica carinata HOM05D006647 ORTHO05D008232 1.1e-64 251.1 209 57.9
C03p46630 Brassica napus HOM05D006647 ORTHO05D008232 1.1e-64 251.1 174 64.9
FvH4_7g00690 Fragaria vesca HOM05D006647 ORTHO05D008232 1.1e-64 251.1 199 61.3
FAN06G3601 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.1e-64 251.1 199 61.3
FAN10G4164 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.1e-64 251.1 199 61.3
BolC3t16926H Brassica oleracea HOM05D006647 ORTHO05D008232 1.4e-64 250.8 209 57.9
Hund20080 Selenicereus undatus HOM05D006647 ORTHO05D008232 1.4e-64 250.8 215 58.1
Potri.009G064500 Populus trichocarpa HOM05D006647 ORTHO05D008232 2.4e-64 250.0 215 58.1
Thecc.01G413900 Theobroma cacao HOM05D006647 ORTHO05D008232 2.4e-64 250.0 237 52.7
AT5G26880 Arabidopsis thaliana HOM05D006647 ORTHO05D008232 3.1e-64 249.6 199 58.8
arahy.Tifrunner.gnm1.ann1.BH4E67 Arachis hypogaea HOM05D006647 ORTHO05D008232 3.1e-64 249.6 212 56.6
arahy.Tifrunner.gnm1.ann1.K7GJAS Arachis hypogaea HOM05D006647 ORTHO05D008232 3.1e-64 249.6 212 56.6
Medtr3g027870 Medicago truncatula HOM05D006647 ORTHO05D008232 3.1e-64 249.6 202 58.4
Nitab4.5_0011905g0020 Nicotiana tabacum HOM05D006647 ORTHO05D008232 4.0e-64 249.2 174 67.2
Sabra09G0047700 Salix brachista HOM05D006647 ORTHO05D008232 4.0e-64 249.2 274 49.6
COL.COLO4_23898 Corchorus olitorius HOM05D006647 ORTHO05D008232 5.3e-64 248.8 205 57.6
EL10Ac2g04310 Beta vulgaris HOM05D006647 ORTHO05D008232 6.9e-64 248.4 208 58.2
CSS0029691 Camellia sinensis var. sinensis HOM05D006647 ORTHO05D008232 6.9e-64 248.4 245 53.9
Duzib138G0958 Durio zibethinus HOM05D006647 ORTHO05D008232 6.9e-64 248.4 234 54.7
QL04p005221 Quercus lobata HOM05D006647 ORTHO05D008232 1.2e-63 247.7 232 53.9
Nitab4.5_0001542g0050 Nicotiana tabacum HOM05D006647 ORTHO05D008232 2.0e-63 246.9 172 67.4
Solyc01g086900.4 Solanum lycopersicum HOM05D006647 ORTHO05D008232 4.5e-63 245.7 192 62.5
Actinidia20680 Actinidia chinensis HOM05D006647 ORTHO05D008232 5.8e-63 245.4 200 60.0
Sopen01g033910 Solanum pennellii HOM05D006647 ORTHO05D008232 7.6e-63 245.0 185 63.8
Gorai.004G174000 Gossypium raimondii HOM05D006647 ORTHO05D008232 1.7e-62 243.8 194 60.3
Lj5g0023478 Lotus japonicus HOM05D006647 ORTHO05D008232 1.7e-62 243.8 206 55.8
Gohir.A08G145600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 2.2e-62 243.4 194 59.8
AagrBONN_evm.TU.Sc2ySwM_362.154 Anthoceros agrestis HOM05D006647 ORTHO05D008232 2.9e-62 243.0 171 67.3
Gohir.D08G166600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 3.8e-62 242.7 194 59.8
Migut.O00562 Erythranthe guttata HOM05D006647 ORTHO05D008232 8.4e-62 241.5 177 63.8
Migut.N01481 Erythranthe guttata HOM05D006647 ORTHO05D008232 1.4e-61 240.7 197 59.9
Pp3c23_8130 Physcomitrium patens HOM05D006647 ORTHO05D008232 1.4e-61 240.7 167 64.1
Sed0007518 Sechium edule HOM05D006647 ORTHO05D008232 1.4e-61 240.7 177 62.1
CDE06G2349 Ceratophyllum demersum HOM05D006647 ORTHO05D008232 9.3e-61 238.0 176 62.5
Cc02_g28430 Coffea canephora HOM05D006647 ORTHO05D008232 1.8e-59 233.8 183 59.6
MBI01_g36432_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 7.4e-58 228.4 228 50.0
SalBow4G2297 Salvia bowleyana HOM05D006647 ORTHO05D008232 1.6e-57 227.3 151 65.6
unitig_0.g1579 Utricularia gibba HOM05D006647 ORTHO05D008232 2.2e-57 226.9 188 58.5
SMO351G0607 Selaginella moellendorffii HOM05D006647 ORTHO05D008232 3.7e-57 226.1 156 64.1
MSTRG.5008 Avicennia marina HOM05D006647 ORTHO05D008232 6.3e-57 225.3 197 55.3
CBR_g41537 Chara braunii HOM05D006647 ORTHO05D008232 1.4e-56 224.2 165 63.0
SGA_v2.0_scaffold4G02252 Striga asiatica HOM05D006647 ORTHO05D008232 2.6e-55 219.9 185 60.0
ClCG09G004320 Citrullus lanatus HOM05D006647 ORTHO05D008232 1.7e-54 217.2 211 51.2
Lsat_1_v5_gn_1_109441 Lactuca sativa HOM05D006647 ORTHO05D008232 3.2e-53 213.0 186 55.4
Rhsim01G0130800 Rhododendron simsii HOM05D006647 ORTHO05D008232 2.1e-52 210.3 309 40.5
ECA248G3327 Erigeron canadensis HOM05D006647 ORTHO05D008232 8.8e-51 204.9 175 58.9
AUR62023053 Chenopodium quinoa HOM05D006647 ORTHO05D008232 2.4e-48 196.8 188 54.3
MCO06G107 Micromonas commoda HOM05D006647 ORTHO05D008232 9.1e-48 194.9 189 55.6
A03p38500 Brassica napus HOM05D006647 ORTHO05D008232 1.2e-47 194.5 131 66.4
MBI04_g14259_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 4.5e-47 192.6 171 55.6
Cre10.g417650 Chlamydomonas reinhardtii HOM05D006647 ORTHO05D008232 2.0e-42 177.2 185 48.1
vmacro21178 Vaccinium macrocarpon HOM05D006647 ORTHO05D008232 2.6e-39 166.8 259 40.2
Os08g0506500 Oryza sativa ssp. japonica HOM05D006647 ORTHO05D008232 8.5e-38 161.8 208 45.2
MELO3C023534.2 Cucumis melo HOM05D006647 ORTHO05D008232 9.4e-37 158.3 136 51.5
FAN01G0876 Fragaria x ananassa HOM05D006647 ORTHO05D008232 9.4e-37 158.3 104 72.1
FAN01G1843 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.6e-36 157.5 104 71.2
Oeu010354.1 Olea europaea HOM05D006647 ORTHO05D008232 2.1e-36 157.1 89 78.7
PGR031G3323 Punica granatum HOM05D006647 ORTHO05D008232 2.1e-36 157.1 90 77.8
QL04p005246 Quercus lobata HOM05D000030 ORTHO05D008232 3.6e-36 156.4 161 50.9
Zm00001eb034920 Zea mays HOM05D006647 ORTHO05D008232 8.2e-33 145.2 112 59.8
Cc00_g30670 Coffea canephora HOM05D006647 ORTHO05D008232 4.5e-31 139.4 82 74.4
Ca_26823_v3 Cicer arietinum L. HOM05D006647 ORTHO05D008232 1.1e-29 134.8 81 71.6
PGSC0003DMG400006881 Solanum tuberosum HOM05D006647 ORTHO05D008232 2.7e-28 130.2 115 53.9
Cpa.g.sc234.12 Carica papaya HOM05D006647 ORTHO05D008232 5.7e-26 122.5 113 52.2
Aa31LG10G17440 Aethionema arabicum HOM05D006647 ORTHO05D008232 3.7e-25 119.8 108 51.9
BcaB01g01017 Brassica carinata HOM05D006647 ORTHO05D008232 2.7e-23 113.6 83 56.6
BcaB04g18808 Brassica carinata HOM05D006647 ORTHO05D008232 2.7e-23 113.6 83 56.6
Cpa.g.sc234.13 Carica papaya HOM05D006647 ORTHO05D008232 1.0e-22 111.7 105 57.1
Ah.10g029810 Amaranthus hybridus HOM05D006647 ORTHO05D008232 2.5e-21 107.1 95 51.6
MBI04_g09488_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 1.4e-19 101.3 58 77.6
FAN01G1906 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.3e-17 94.7 70 58.6
Aa31LG10G17450 Aethionema arabicum HOM05D006647 ORTHO05D008232 6.3e-17 92.4 130 43.1
PRCOL_00005260 Prasinoderma coloniale HOM05D006647 ORTHO05D008232 1.8e-16 90.9 161 34.8


User provided reference genes

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