Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 7.6e-130 467.2 247 100.0
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 3.6e-95 352.1 249 75.5
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 4.4e-93 345.1 249 74.3
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.4e-91 340.1 249 72.3
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 2.2e-89 332.8 249 73.1
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 8.0e-87 324.3 246 70.7
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 2.2e-76 289.7 255 62.7
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 1.4e-75 287.0 187 75.9
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 1.2e-69 267.3 204 66.7
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 6.0e-66 255.0 233 58.4
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 7.8e-66 254.6 234 59.4
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 2.3e-65 253.1 194 66.5
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 1.1e-64 250.8 214 61.2
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 1.5e-64 250.4 232 58.2
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 1.9e-64 250.0 224 58.0
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.5e-64 249.6 236 58.9
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 2.5e-64 249.6 231 59.3
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 7.3e-64 248.1 224 59.8
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 1.6e-63 246.9 228 59.2
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 1.6e-63 246.9 222 58.6
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 2.1e-63 246.5 229 59.0
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 2.8e-63 246.1 235 58.3
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.8e-63 246.1 200 62.5
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 2.8e-63 246.1 222 59.9
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 3.6e-63 245.7 231 58.4
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 4.7e-63 245.4 196 64.3
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 6.2e-63 245.0 231 61.0
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 6.2e-63 245.0 218 60.6
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 8.1e-63 244.6 222 59.5
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 8.1e-63 244.6 200 62.0
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 8.1e-63 244.6 223 60.5
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 1.1e-62 244.2 231 58.4
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 1.4e-62 243.8 225 60.0
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 1.4e-62 243.8 223 60.1
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 1.4e-62 243.8 228 59.2
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 1.4e-62 243.8 230 60.9
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 1.8e-62 243.4 157 74.5
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 1.8e-62 243.4 157 74.5
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 1.8e-62 243.4 228 58.8
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 2.3e-62 243.0 223 59.6
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 2.3e-62 243.0 223 59.6
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 2.3e-62 243.0 173 70.5
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 2.3e-62 243.0 205 63.4
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 3.1e-62 242.7 237 56.1
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 4.0e-62 242.3 225 58.2
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 5.2e-62 241.9 222 56.3
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 5.2e-62 241.9 237 56.1
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 5.2e-62 241.9 225 58.7
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 6.8e-62 241.5 203 60.6
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 6.8e-62 241.5 235 56.2
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 6.8e-62 241.5 174 69.5
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 8.9e-62 241.1 234 55.6
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 8.9e-62 241.1 208 62.0
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 8.9e-62 241.1 214 60.7
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.2e-61 240.7 242 55.8
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 1.2e-61 240.7 195 63.6
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 1.2e-61 240.7 180 65.6
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 1.2e-61 240.7 180 65.6
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 1.5e-61 240.4 235 57.4
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 1.5e-61 240.4 203 60.6
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 1.5e-61 240.4 231 57.1
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 2.0e-61 240.0 225 57.3
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 2.0e-61 240.0 225 58.7
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 2.6e-61 239.6 234 56.8
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 3.4e-61 239.2 200 62.0
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 4.4e-61 238.8 152 76.3
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 4.4e-61 238.8 223 59.2
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 4.4e-61 238.8 223 59.2
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 4.4e-61 238.8 222 56.8
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 4.4e-61 238.8 199 60.3
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 4.4e-61 238.8 233 55.8
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 5.8e-61 238.4 239 53.1
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 7.5e-61 238.0 223 59.2
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 7.5e-61 238.0 200 61.5
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 7.5e-61 238.0 226 58.4
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 9.8e-61 237.7 231 57.6
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 9.8e-61 237.7 199 62.8
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 1.3e-60 237.3 225 58.2
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 1.3e-60 237.3 197 60.9
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 1.3e-60 237.3 193 62.7
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 1.7e-60 236.9 233 57.1
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 2.2e-60 236.5 156 70.5
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 2.9e-60 236.1 188 63.8
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 2.9e-60 236.1 204 60.8
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 2.9e-60 236.1 225 59.6
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 2.9e-60 236.1 197 64.0
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 2.9e-60 236.1 230 56.5
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 3.7e-60 235.7 173 66.5
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 4.9e-60 235.3 222 56.8
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 4.9e-60 235.3 225 58.7
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 4.9e-60 235.3 232 55.2
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 6.4e-60 235.0 197 61.4
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 8.3e-60 234.6 223 58.3
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 8.3e-60 234.6 232 55.2
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 8.3e-60 234.6 222 58.6
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 1.1e-59 234.2 233 57.5
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.4e-59 233.8 225 58.2
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 1.4e-59 233.8 235 54.9
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 1.9e-59 233.4 224 58.5
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.9e-59 233.4 224 58.5
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 1.9e-59 233.4 229 56.8
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 3.2e-59 232.6 173 69.4
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 3.2e-59 232.6 233 56.7
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 1.6e-58 230.3 230 55.7
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 1.6e-58 230.3 233 54.5
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 2.7e-58 229.6 232 54.7
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 3.5e-58 229.2 230 55.7
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 6.0e-58 228.4 230 55.7
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 1.0e-57 227.6 230 55.7
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 1.3e-57 227.3 230 55.2
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 1.3e-57 227.3 233 55.8
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 2.3e-57 226.5 195 59.5
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 3.9e-57 225.7 171 65.5
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 5.1e-57 225.3 218 56.4
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 5.1e-57 225.3 218 56.4
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 5.1e-57 225.3 230 55.7
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 6.6e-57 224.9 230 56.1
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 1.5e-56 223.8 219 57.5
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 2.5e-56 223.0 230 55.7
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 2.5e-56 223.0 195 60.0
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 2.5e-56 223.0 230 55.7
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 2.5e-56 223.0 230 55.7
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 2.5e-56 223.0 195 60.0
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 2.5e-56 223.0 230 55.7
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 3.3e-56 222.6 220 56.8
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 4.3e-56 222.2 230 54.8
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 5.6e-56 221.9 222 55.9
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 1.6e-55 220.3 223 56.1
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 3.6e-55 219.2 223 56.1
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 2.2e-52 209.9 246 51.6
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 1.3e-49 200.7 185 55.1
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 2.9e-44 183.0 236 44.9
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 2.5e-40 169.9 228 46.5
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 2.6e-37 159.8 224 45.1
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 4.6e-34 149.1 134 59.7
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.6e-26 124.0 126 56.3
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 1.3e-23 114.4 72 69.4
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 5.7e-16 89.0 60 68.3
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 2.8e-15 86.7 58 74.1
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 2.4e-14 83.6 117 42.7
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 4.2e-11 72.8 134 41.0
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 2.4e-06 57.0 44 68.2
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 6.9e-06 55.5 38 71.1


User provided reference genes

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